BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G27330.1

Length=736
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933142 jgi|Araly1|933142|scaffold_401130.1                        575    2e-163


> Ahg933142 jgi|Araly1|933142|scaffold_401130.1
Length=393

 Score =  575 bits (311),  Expect = 2e-163
 Identities = 366/393 (93%), Gaps = 1/393 (0%)
 Strand=Plus/Plus

Query  49   AGCCACGGCTT-CAAAAGAAATGCTCACCCAGTTCCTTTATCGCTCCTTCACTCCTCTCC  107
            |||||| |||| ||| ||||||||||| ||| ||||| |||||||||| || |||| |||
Sbjct  1    AGCCACAGCTTCCAAGAGAAATGCTCAACCATTTCCTCTATCGCTCCTACATTCCTTTCC  60

Query  108  TCTTCTCCAGATCTTTCTCCTCTACGCTTTTCGTTAAAGGCATATCTTTCTCAAGCACTG  167
            ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct  61   TCTTCTCCAGATCCTTCTCATCTACGCTTTTCGTTAAAGGCATATCTTTCTCAAGCACAG  120

Query  168  AAGAAACATTAACCCAAGCATTTTCTCAATATGGTCAAGTTCTCAAAGTGGATGTTATAA  227
            ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct  121  AAGAAACATTAACCCAAGCCTTTTCTCAATATGGTCAAGTTCTCAGAGTGGATGTTATAA  180

Query  228  TGGACAAAATCAGATGCAGACCAAAAGGGTTTGCTTATGTCACATTCTCATCTAAAGAAG  287
            |||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct  181  TGGATAAAATCAGATGCAGACCAAAAGGGATTGCTTATGTCACATTCTCTTCTAAAGAAG  240

Query  288  AAGCCGAGAAAGCTTTATTAGAACTCAACGCCCAGTTGGTTGACGGGCGGGTCGTGATCC  347
            |||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct  241  AAGCCGGGAAAGCTTTATTAGAACTCAACGGCCAGTTGGTAGACGGGCGGGTCGTGATCC  300

Query  348  TTGACACAACAAAAGCTGCAAAACACAATCCACCAGACACCAAGCCAAATCATGCAGGTG  407
            |||| | ||||||||||| |||||||||| |||||| ||||||||| || ||||||||||
Sbjct  301  TTGATATAACAAAAGCTGGAAAACACAATACACCAGGCACCAAGCCGAAGCATGCAGGTG  360

Query  408  GTGATAGCTGATACTTCTCTTTTGTCAACTTGT  440
            |||||||||||||||||||||||||||||||||
Sbjct  361  GTGATAGCTGATACTTCTCTTTTGTCAACTTGT  393



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27105393987


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5