BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27350.5
Length=2287
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481634 jgi|Araly1|481634|fgenesh2_kg.4__694__AT2G27350.2 2806 0.0
Ahg359343 jgi|Araly1|359343|fgenesh1_pg.C_scaffold_128000002 597 1e-169
> Ahg481634 jgi|Araly1|481634|fgenesh2_kg.4__694__AT2G27350.2
Length=1883
Score = 2806 bits (1519), Expect = 0.0
Identities = 1723/1816 (95%), Gaps = 36/1816 (2%)
Strand=Plus/Plus
Query 372 GGGGAATGCAGAGAACGTTTTGCTGCGAGGTGGAGAACGGTTGGAAGGAATCCCTCTCTC 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 GGGGAATGCAGAGAACGTTTTGCTGCGAGGTGGAGAACGGTTGGAAGGAATCCCTCTCTC 130
Query 432 AAGGGATTGTTATCGTAGGTCCTAAAGCAAGAACTAGGGACAAACCTTGGGATATTCTCT 491
||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||
Sbjct 131 AAGGGATTGTTATCGTA-GTCCTAAAGCAAGAACCAGGGACAAACCTTGGGATAATCTCT 189
Query 492 AATCTTTCATC-TTTGATTAGGACAGCAAAGACTTAAGAAGCAGCATGACTCGGATTTTG 550
||||||||| | ||||||||||| | ||| |||||||||||||||||||||||||||||
Sbjct 190 AATCTTTCA-CATTTGATTAGGA-A--AAATACTTAAGAAGCAGCATGACTCGGATTTTG 245
Query 551 GTTCAAAGAGGTTCATCAGGCAGTTCTTCCAACTCTAGCCGTCCTTCTTCCTCATCTAGT 610
|||||| ||||||||||||| |||||||||||||| ||||| | | | |
Sbjct 246 GTTCAACGAGGTTCATCAGGAAGTTCTTCCAACTCGAGCCG---------C-C--C---T 290
Query 611 TCTTCCTCGGGATCAGAAACACAGATAAACAATAATATTCCGGTTCCTCCTGTTACTATA 670
|||||||||||| ||||| ||||||||||||||| ||||| |||||||||||||||||||
Sbjct 291 TCTTCCTCGGGAACAGAACCACAGATAAACAATACTATTCAGGTTCCTCCTGTTACTATA 350
Query 671 GATGAAGAAATTACGGATGAGAAACAAGAAGAGGTTACTGTAGTTGAAAAAGCAGAGTGT 730
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 351 GATGAAGAAATTACGGATGAGAAACAAGACGAGGTTACTGTAGTTGAAAAAGTAGAGTGT 410
Query 731 TCTGATGCTAAAG-ATGTAGCTGTGGACAGTGA-TGAACCTGCGGATAGAGAAGATGATG 788
||||||||| ||| ||||||||||||||| | | |||||||| |||||||||||||||||
Sbjct 411 TCTGATGCT-AAGAATGTAGCTGTGGACA-TTAGTGAACCTGTGGATAGAGAAGATGATG 468
Query 789 AAGGGTTGGTAGTTGCAGAAAATGTTCATGTTCAAAGTGAAGGTATAGATTGTGATTCTC 848
|||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 469 AAGGATTGGTAGTTTCAGAAAATGTTCATGTTGAAAGTGAAGGTATAGATTGTGATTCTC 528
Query 849 CAGTTAGCGGTGGCAGTAACTCTGATTCACCACCCGTACCAGCTCCACCACCAAAACCTT 908
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 529 CAGTTAGTGGTGGCAGTAACCCTGATTCACCACCCGTACCAGCTCCACCACCAAAACCTT 588
Query 909 CTTCCACTGTCAATCCTGGTAGTAACAGATCGGTTTTGGGAAGTTTTGGCGCTTTACGAA 968
|||| |||||||||||||| | |||||||||||| |||||||||||||||||||||||||
Sbjct 589 CTTCGACTGTCAATCCTGGGAATAACAGATCGGTCTTGGGAAGTTTTGGCGCTTTACGAA 648
Query 969 TTGGACCAACACGAAGAGCTGCTGGGCCTCGCTCTCTTGTTTCCAGTAGGAGTTCGCCAA 1028
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 649 TTGGACCAACACGAAGAGGTTCTGGGCCTCGCTCTCTTGTTTCCAGTAGGAGTTCGCCAA 708
Query 1029 CTGGATCACATCCTTCTTCTCCAAGATCACACAGTGAGAACGAGGGCTATAATAGTTCTG 1088
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 709 CTGGATCGCATCCTTCTTCTCCAAGATCACACAGTGAGAACGAGGGCTATAACAGTTCTG 768
Query 1089 ATGAGCATATGCCATGCTATGTGCCCTCTCATCCTGGCTCTGGCTTGGAAAGAGAACACC 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 ATGAGCATATGCCATGCTATGTGCCCTCTCATCCTGGCTCTGGCTTGGAAAGAGAACACC 828
Query 1149 AGTTTGAAGCAGAGATTAGATATTCAAAAGGATTTGAAATTAGGCGGATGTTGGAAGATG 1208
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 829 AGTTTGAAGCAGAGATTAGAGATTCAAAAGGCTTTGAAATTAGGCGGATGTTGGAAGATG 888
Query 1209 GAAATTGTCTTTTTCGAGCTGTTGCAGATCAAGTATATGGGGACTCAGAGGCATATGACT 1268
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GAAATTGTCTTTTTCGGGCCGTTGCAGATCAAGTATATGGGGACTCAGAGGCATATGACT 948
Query 1269 TGGCTAGACAAATGTGCATGGATTACATGGAACAAGAGAGGGATCACTTTTCTCAGTTCA 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 TGGCTAGACAAATGTGCATGGATTACATGGAACAAGAGAGGGATCACTTTTCTCAGTTCA 1008
Query 1329 TAACCGAAGGTTTTACCTCTTACTTGAAGAGGAAAAGAAGAGATAAGGTCTATGGAAACA 1388
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 TAACCGAAGGTTTTACTTCTTACTTGAAGAGGAAAAGAAGAGATAAGGTCTATGGAAACA 1068
Query 1389 ACGTAGAGATCCAAGCTTTAGCAGAAATGTACAATAGGCCAATCCACATTTACTCATATA 1448
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1069 ACGTAGAGATCCAAGCTTTAGCAGAAATGTATAATAGGCCAATCCACATTTACTCATATA 1128
Query 1449 GCACAGAGCCTATCAACATATTTCAAGGAAACTACAGCACGGATACACCTCCCATAAGGC 1508
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1129 GCACAGAGCCTATCAACATATTTCAAGGAAACTACAGCACGGATACACCTCCCATAAGAC 1188
Query 1509 TGAGTTACCACCACGGGAATCATTATAATTCTTTGGTGGATCCACATCGGTTGACAGTTG 1568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 TGAGTTACCACCACGGGAATCATTATAATTCTTTGGTGGATCCACATCGGTTGACAGTTG 1248
Query 1569 GTGCAGGACTTGGATTTAGTAGCCTTAGTGGGAGACACGTGGACAAGGAACAGGTGAAAG 1628
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 GTGCCGGACTTGGATTTAGTAGCCTTAGTGGGAGACACGTGGACAAGGAACAGGTGAAAG 1308
Query 1629 CTGCTATAAAGGCTCAGCAAGAACATCAAATTGATAATGCGCTGTTAGCAGAAGGGAGAT 1688
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1309 CTGCTATAAAGGCTCAGCAAGAACATCAGATTGATAATGCGCTCTTAGCAGAAGGGAGAT 1368
Query 1689 TTTACTCTGACCTTGAGCTTACGGAAAAGGAAATAGAGCGGTCGGTAATGGAAGCTTCTC 1748
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
Sbjct 1369 TTTACTCTGACCTTGAGCTTACGGAAAAGGAAATAGAGCGGGCGGTAATGGATGCTTCCC 1428
Query 1749 GTGCTGAGTATCTTATGGAATGGTCTAAGCCACGAATTGGTCCAAAGGAATCATCCACCT 1808
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1429 GTGCTGAATATCTTATGGAATGGTCTAAGCCACGAATTGGTCCAAAGGAATCATCCACCT 1488
Query 1809 CGAATGCTGAGACATCATCTTCTGGAGCTACAGGACCTTCAGGCAGCGATTCGAAACCAG 1868
|||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||
Sbjct 1489 CGAATGCTGAGACATCATCTTCTGGAGCTA--G-ACCTTCAGGCAGTGATTCGAAACCAG 1545
Query 1869 CAG-AGGCAGTAAAA---GAAAAGACGGTGCTGAGCAGCAGTATCGAGATGGTATTGTCG 1924
|| ||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 1546 -AGGAGGCAGTAAAAAAAGAAAAGACTGTGCTGAGTAGCAGCATCGAGATGGTATTGTCG 1604
Query 1925 ATGGGATTTAGCTACGCACAGGCCATGGAAGCTTATAGCATTTTTGGGGATGACGTTGAC 1984
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1605 ATGGGATTTAGCTACACACAGGCCATGGAAGCTTATAGCATTTTTGGGGATGACGTTGAC 1664
Query 1985 TCTATGGTCTGTTATGTACTGGAGACGAGCTGTGGCGGCAACAACCGACGCAAAGGCAAA 2044
||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1665 TCTATGGTCTGCTATGTACTTGAGACAAGCTGTGGCGGCAACAACCGACGCAAAGGCAAA 1724
Query 2045 GCCACGGAATAGAGAATGTAACATGAATTGCTCTGTATTAATAGTATATGATATACCAAT 2104
|||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||
Sbjct 1725 GCCACGGAATAGAGAATGTAACATGAGTTGCTCTGTATTAGTAGTATATGAAATACCAAT 1784
Query 2105 TCGTATTCCT---ATCAATGGTGGGCGATTACCCTTATCAGAATAATGAAAAATAAACTT 2161
|||||||||| | ||| |||||||||||||||||| |||||||||||| |||||||||
Sbjct 1785 TCGTATTCCTCCGACCAACGGTGGGCGATTACCCTTACCAGAATAATGAAGAATAAACTT 1844
Query 2162 GTGCATCCATGACATG 2177
|||||| |||||||||
Sbjct 1845 GTGCATTCATGACATG 1860
> Ahg359343 jgi|Araly1|359343|fgenesh1_pg.C_scaffold_128000002
Length=436
Score = 597 bits (323), Expect = 1e-169
Identities = 412/452 (91%), Gaps = 17/452 (4%)
Strand=Plus/Plus
Query 536 ATGACTCGGATTTTGGTTCAAAGAGGTTCATCAGGCAGTTCTTCCAACTCTAGCCGTCCT 595
||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||
Sbjct 1 ATGACTCGGATTTTGGTTCAACGAGGTTCATCAGGAAGTTCTTCCAACTCGAGCCG---- 56
Query 596 TCTTCCTCATCTAGTTCTTCCTCGGGATCAGAAACACAGATAAACAATAATATTCCGGTT 655
| | | ||||||||| ||| ||||| ||||||||||||||| ||||| ||||
Sbjct 57 -----C-C--C---TTCTTCCTCAGGAACAGAACCACAGATAAACAATACTATTCAGGTT 105
Query 656 CCTCCTGTTACTATAGATGAAGAAATTACGGATGAGAAACAAGAAGAGGTTACTGTAGTT 715
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 106 CCTCCTGTTACTATAGATGAAGAAATTACGGATGAGAAACAAGACGAGGTTACTGTAGTT 165
Query 716 GAAAAAGCAGAGTGTTCTGATGCTAAAGA-TGTAGCTGTGGACAGTGATGAACCTGCGGA 774
||||||| |||||||||||||||||| || |||||||||||||||| ||||||||| |||
Sbjct 166 GAAAAAGTAGAGTGTTCTGATGCTAA-GAATGTAGCTGTGGACAGTAATGAACCTGTGGA 224
Query 775 TAGAGAAGATGATGAAGGGTTGGTAGTTGCAGAAAATGTTCATGTTCAAAGTGAAGGTAT 834
|||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||
Sbjct 225 TAGAGAAGATGATGAAGGATTGGTAGTTTCAGAAAATGTTCATGTTGAAAGTGAAGGTAT 284
Query 835 AGATTGTGATTCTCCAGTTAGCGGTGGCAGTAACTCTGATTCACCACCCGTACCAGCTCC 894
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 285 AGATTGTGATTCTCCAGTTAGTGGTGGCAGTAACCCTGATTCACCACCCGTACCAGCTCC 344
Query 895 ACCACCAAAACCTTCTTCCACTGTCAATCCTGGTAGTAACAGATCGGTTTTGGGAAGTTT 954
|||||||||||||||||| |||||||||||||| | |||||||||||| |||||||||||
Sbjct 345 ACCACCAAAACCTTCTTCGACTGTCAATCCTGGGAATAACAGATCGGTCTTGGGAAGTTT 404
Query 955 TGGCGCTTTACGAATTGGACCAACACGAAGAG 986
|| ||||||||||| |||||||||||||||||
Sbjct 405 TGACGCTTTACGAACTGGACCAACACGAAGAG 436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86122043945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5