BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27360.1
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900444 jgi|Araly1|900444|Al_scaffold_0004_1094 1770 0.0
Ahg912691 jgi|Araly1|912691|Al_scaffold_0001_2945 1042 0.0
Ahg336556 jgi|Araly1|336556|fgenesh1_pg.C_scaffold_1003121 857 0.0
Ahg912693 jgi|Araly1|912693|Al_scaffold_0001_2947 268 6e-71
> Ahg900444 jgi|Araly1|900444|Al_scaffold_0004_1094
Length=1179
Score = 1770 bits (958), Expect = 0.0
Identities = 1108/1181 (94%), Gaps = 8/1181 (1%)
Strand=Plus/Plus
Query 36 ATGGCGTCTCAAGATTGTCATATGTTATTGAGCTTCTTTATATCTACTTTTTTAATCACT 95
|||||||||||||||| |||||||||||||||||||||||||| |||| ||||| |||||
Sbjct 1 ATGGCGTCTCAAGATTCTCATATGTTATTGAGCTTCTTTATATATACTCTTTTAGTCACT 60
Query 96 GTCGTGACCTCGCAAACTCGATGCCGAAATTTCAAGTCGATCATCAGTTTCGGCGACTCG 155
| |||||||||||||| ||||||| || ||| |||||||||||||||| ||||| ||
Sbjct 61 ATAGTGACCTCGCAAACGGGATGCCGGAACTTCGAGTCGATCATCAGTTTTGGCGATTCA 120
Query 156 ATTACTGATACTGGAAACTTACTCGGCCTCTCTAGTCCTAACGATCTTCCTGAGTCAGCC 215
||||| || || |||||||| ||||| |||||||||||||| |||||||||||||| ||
Sbjct 121 ATTACGGACACCGGAAACTTGCTCGGTCTCTCTAGTCCTAAGGATCTTCCTGAGTCGGCG 180
Query 216 TTTCCGCCATACGGAGAAACCTTCTTCCACCATCCGTCTGGTCGTTTCTCCGATGGCCGC 275
||||| |||||||||||||||||||||||| |||| || || ||||||||||| ||||||
Sbjct 181 TTTCCACCATACGGAGAAACCTTCTTCCACTATCCCTCGGGCCGTTTCTCCGACGGCCGC 240
Query 276 CTCATCATCGACTTCATTGCTGAATTCTTAGGGATTCCACATGTGCCTCCGTTTTATGGA 335
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 CTCATCATCGATTTCATTGCTGAATTCTTAGGGATTCCACATGTGCCTCCATTTTATGGA 300
Query 336 TCTAAAAATGGAAACTTTGAGAAAGGAGTTAATTTTGCGGTGGGAGGAGCAACAGCACTA 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTAAAAATGGAAACTTTGAGAAAGGAGTTAATTTTGCGGTGGGAGGAGCAACAGCACTA 360
Query 396 GAATGTTCTGTTCTTGAGGAGAAAGGAACTCATTGTTCTCAAAGCAATATTAGTTTAGGA 455
|||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||
Sbjct 361 GAATGTTCTGTTCTTGAGGAGAGAGGAACTCATTGTTCTCAAAGCAACATCAGTTTAGGA 420
Query 456 AACCAGCTTAAGAGCTTCAAAGAGAGTTTACCATATCTTTGTGGCTCCTCATCACCAGAT 515
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 421 AACCAGCTTAAGAGCTTCAAAGAGAGTTTACCATATCTTTGTGGCTCCTCATCAGTAGAT 480
Query 516 TGTAGAGATATGATTGAAAATGCATTTATTCTCATTGGAGAAATTGGAGGGAATGATTAC 575
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 481 TGTAGAGATATGATTGGAAATGCTTTTATTCTCATTGGAGAAATTGGAGGGAATGATTAT 540
Query 576 AACTTCCCATTATTTGATCGCAAGAACATTGAGGAAGTCAAAGAGCTGGTTCCCCTTGTG 635
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 541 AACTTCCCATTATTCGATCGCAAAAACATTGAGGAAGTCAAAGAGCTGGTTCCACTTGTG 600
Query 636 ATCACTACTATTTCTTCGGCGATCTCGGAGTTGGTTGATATGGGAGCAAGAACATTCCTA 695
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 601 ATCACTACTATTTCTTCGGCGATTTCGGAGTTGGTTGATATGGGAGCAAGAACATTCCTA 660
Query 696 GTTCCTGGAAATTTTCCACTTGGATGCTCTGTAGCCTATTTGACGTTATACGAAACACCA 755
|||||||||||||| || || ||||||||||||||||||||||||||||| |||||| |
Sbjct 661 GTTCCTGGAAATTTCCCGCTCGGATGCTCTGTAGCCTATTTGACGTTATATGAAACATCG 720
Query 756 AACAAAGAAGAATACAATCCTCTAACAGGATGTTTGACATGGCTGAACGACTTTTCAGTA 815
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 721 AACAAGGAAGAATACAATCCTCTAACAGGATGTTTGACATGGTTGAACGACTTTTCAGTA 780
Query 816 TACCACAACGAGCAGCTTCAAGCAGAACTCAAAAGACTTAGGAATCTTTACCCTCATGTC 875
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 781 TACCACAACGAGCAGCTTCAAGCAGAACTCAACAGACTTAGGAAGCTTTACCCTCATGTC 840
Query 876 AACATCATATATGGTGACTACTACAATACTCTGTTGCGCCTTATGCAAGAACCATCCAAA 935
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 841 AACATCATATATGGTGACTACTACAACACTCTGTTGCGCCTTGTGCAAGAACCATCCAAA 900
Query 936 TTCGGGCTCATGGACAGACCTTTGCCCGCTTGTTGCGGGTTAGGAGGACCATACAACTTC 995
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 901 TTCGGGCTTATGGACAGACCTTTGCCCGCTTGTTGCGGGGTAGGAGGACCATACAACTTC 960
Query 996 ACCTTTAGTATAAAATGTGGGAGTAAAGGAGTTGAATATTGTAGTGATCCTTCGAAGTAT 1055
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 961 ACCTTTAGTATAAAATGTGGGAGTAAAGGAGTTGAATATTGTAGTGACCCTTCGAAGTAT 1020
Query 1056 GTGAATTGGGACGGCATTCATATGACTGAGGCTGCATACAAATGGATATCCGAGGGCGTA 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1021 GTGAATTGGGACGGCATTCATATGACTGAGGCTGCATACAAATGGATATCCGAGGGCATA 1080
Query 1116 CT-AACAGGGCCATATGCGATTCCTCCTTTCAATTGGTCATGCCTC-GACTCTAAGATTA 1173
|| || ||| ||||||||||||||||||||| ||||||| |||||| | |||| ||||||
Sbjct 1081 CTCAA-AGGACCATATGCGATTCCTCCTTTCGATTGGTCCTGCCTCAG-CTCTGAGATTA 1138
Query 1174 AGAACAATGA-GTCATTACACACACAATATTCTTTGATGAA 1213
|| |||| || ||||||| ||||| | |||||||||||||
Sbjct 1139 AGGACAA-GAAGTCATTAGACACA-AC-ATTCTTTGATGAA 1176
> Ahg912691 jgi|Araly1|912691|Al_scaffold_0001_2945
Length=2427
Score = 1042 bits (564), Expect = 0.0
Identities = 957/1144 (84%), Gaps = 37/1144 (3%)
Strand=Plus/Plus
Query 64 TGAGCTTCTTTA-TATCTACTTTTTTAATCACTGTC-GTGACCTCGCAAACTCGATGCCG 121
|||||||| ||| |||||||| |||| ||||| || | || ||||||||| | ||||||
Sbjct 1295 TGAGCTTC-TTATTATCTACTCTTTTGGTCACT-TCTGCGAACTCGCAAACGCAATGCCG 1352
Query 122 AAATTTCAAGTCGATCATCAGTTTCGGCGACTCGATTACTGATACTGGAAACTTACTCGG 181
|||||||| || ||||| |||||||| || || ||| | || || |||||||| |||||
Sbjct 1353 GAATTTCAAATCAATCATTAGTTTCGGGGATTCAATTGCCGACACCGGAAACTTGCTCGG 1412
Query 182 CCTCTCTAG-TCCTAACGATCTTCCTGAGTCAGCCTTTCCGCCATACGGAGAAACCTTCT 240
||||| | ||||||| ||||||||| ||||| |||| || ||||||||||||||||
Sbjct 1413 TCTCTC-GGATCCTAACAATCTTCCTGCTTCAGCATTTCTACCGTACGGAGAAACCTTCT 1471
Query 241 TCCACCATCCGTCTGGTCGTTTCTCCGATGGCCGCCTCATCATCGACTTCATTGCTGAAT 300
||||||| || | ||||||| |||||| ||||||||||||||||| |||||||||||||
Sbjct 1472 TCCACCACCCAACCGGTCGTTACTCCGACGGCCGCCTCATCATCGATTTCATTGCTGAAT 1531
Query 301 TCTTAGGG-ATTCCACATGTGCCTCCGTTTTATGGATCTAAAAATGGAAACTTTGAGAAA 359
|||| ||| |||| | ||||||||| ||||| |||| | ||||| ||||||||||||
Sbjct 1532 TCTT-GGGTTTTCCGCTTGTGCCTCCTTTTTACGGATGTCGAAATGCAAACTTTGAGAAG 1590
Query 360 GGAGTTAATTTTGCGGTGGGAGGAGCAACAGCACTAGAAT-GTT-CTGTTCTTGAGGAGA 417
||||||||||| |||||||| |||||||||||| ||| || || || |||||||||||
Sbjct 1591 GGAGTTAATTTCGCGGTGGGGGGAGCAACAGCATTAG-ATACTTCCT-TTCTTGAGGAGG 1648
Query 418 AAGGAACTCATTGTTCTCA-AAGCAATATTAGTTTAGGAAACCAGCTTAAGAGCTTCAAA 476
||||| ||||| | | | | ||| | ||| || | ||||||| |||||||||
Sbjct 1649 GAGGAATTCATTCTGAT-ATTACCAACGTCAGTCTAAGCGTTCAGCTTAGGAGCTTCAAG 1707
Query 477 GAGAGTTTACCATATCTT-TGTGGCTCCTCATCACCAGATTGTAGAGATATGATTGAAAA 535
|| ||||| || || ||| ||||||| ||| || ||||||||||||||||||||| |||
Sbjct 1708 GAAAGTTTGCC-TAACTTATGTGGCT-CTC--CATCAGATTGTAGAGATATGATTGGAAA 1763
Query 536 TGCATTT-ATTCTCATTGGAGAAATTGGAGGGAATGATTACAACTTCCCATTATTTGATC 594
||| ||| |||||||| ||||| || ||||| |||||||| || ||| || | || | |
Sbjct 1764 TGC-TTTGATTCTCATGGGAGAGATCGGAGGAAATGATTATAATTTCGCACTCTTCCAGC 1822
Query 595 GC-AAGAACATTGAGGAAGTCAAAGAGCTGGTTCCCCTTGTGATCACTACTATTTCTTCG 653
|| ||| |||||||||||| ||||||||||||| ||||| ||| | | ||||||| |
Sbjct 1823 GCAAAG-CCATTGAGGAAGTTGAAGAGCTGGTTCCGTTTGTGGTCAGTGCCATTTCTTTG 1881
Query 654 GCGATCT-CGGAGTTGGT-TGATATGGGAGCAAGAACATTCCTAGTTCCTGGAAATTTTC 711
|| || | ||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1882 GCAAT-TAAGGAATTGGTCTG-TATGGGAGCAAGAACATTCCTAGTTCCTGGAAATTTTC 1939
Query 712 CACTTGGATGCTCTGTAGCCTATTTGACGTTATACGAAACACCAAACAAAGAAGAATACA 771
| || |||||||||||||| |||||||| |||||| ||||| |||||| ||||||||
Sbjct 1940 CGCTCGGATGCTCTGTAGCTTATTTGACATTATACCAAACATCAAACATGGAAGAATATG 1999
Query 772 ATCCTCTAACAGGATGTTTGACATGGCTGAACGACTTTTCAGTATACCACAACGAGCAGC 831
||||||||||||||||||||| ||||||||||| ||||||| ||| ||||||||||||
Sbjct 2000 ATCCTCTAACAGGATGTTTGAAATGGCTGAACGTTTTTTCAGAATATTACAACGAGCAGC 2059
Query 832 TTCAAGCA-GAACTCAAAAGACTTA-GGAATCTTTACCCTCATGTCAACATCATATATGG 889
|||| | | |||||||| ||||| | ||| | | |||||||||||||||||||||||||
Sbjct 2060 TTCA-GAAAGAACTCAACAGACTCAAGGAGT-TGTACCCTCATGTCAACATCATATATGC 2117
Query 890 TGACTACTACAATACTCTGTTGCGCCTTATGCAAGAACCATCCAAATTCGGGCTCATGGA 949
|||||||||||| |||||||||||||| | | ||||||| ||||||||||| |||||||
Sbjct 2118 TGACTACTACAACGCTCTGTTGCGCCTTTTCCCAGAACCAGCCAAATTCGGGTTCATGGA 2177
Query 950 CAGACCTTTGCCCGCTTGTTGCGGGTTAGGAGGACCATACAACTTCACCTTTAGTATAAA 1009
|||||| ||||||||||||||||||||||| |||||||||||||||| |||||||| ||
Sbjct 2178 CAGACCCTTGCCCGCTTGTTGCGGGTTAGGTGGACCATACAACTTCAACTTTAGTAGAAG 2237
Query 1010 ATGTGGGAGTAAAGGAGTTGAATATTGTAGTGATCCTTCGAAGTATGTGAATTGGGACGG 1069
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2238 ATGTGGGAGTGTAGGAGTTGAATATTGTAGTGATCCTTCCAAGTATGTGAATTGGGATGG 2297
Query 1070 CATTCATATGACTGAGGCTGCATACAAATGGATATCCGAGGGCGTACTAACAGGG-CCAT 1128
||||||||||||||| || ||||||| ||||||||| |||||| |||| | |||| || |
Sbjct 2298 CATTCATATGACTGAAGCCGCATACAGATGGATATCTGAGGGCTTACTCA-AGGGACCGT 2356
Query 1129 ATGCGATTCCTCCTTTCAATTGGTCATGCCTC-GACTCTAAGATTAAGAACAATGA-GTC 1186
|||| |||||| ||||||||||||||||||| | ||| |||||| ||| || || |||
Sbjct 2357 ATGCTATTCCTACTTTCAATTGGTCATGCCTAAG-CTCCGAGATTATGAATAA-GAAGTC 2414
Query 1187 ATTA 1190
||||
Sbjct 2415 ATTA 2418
Score = 931 bits (504), Expect = 0.0
Identities = 944/1152 (82%), Gaps = 47/1152 (4%)
Strand=Plus/Plus
Query 69 TTCTTTATATCTACT-TTTTTAATCACTGTCGTGACCTCGCAAAC-TCGATGCCGAAATT 126
|||||| | |||||| | || ||||| |||||| |||| |||| || ||||| ||||
Sbjct 29 TTCTTT-TTTCTACTCTACTT-GTCACTATCGTGAGCTCGGAAACGCCG-TGCCGGAATT 85
Query 127 TCAAGTCGATCATCAGTTTCGGCGACTCGATTACTGATACTGGAAACTTACTCGGCCTCT 186
|||||||||||||||||||||| || |||||| | || || || ||||| |||| ||||
Sbjct 86 TCAAGTCGATCATCAGTTTCGGTGATTCGATTGCCGACACCGGGAACTTGGTCGGTCTCT 145
Query 187 CTAGTCCTAACGATCTTCCTGAGTCAGCCTTTCCGCCATACGGAGAAACCTTCTTCCACC 246
||| || |||| ||||||||| | | || ||||| |||||||||||||| ||||||||||
Sbjct 146 CTAATCGTAACAATCTTCCTGTGACTGCGTTTCCACCATACGGAGAAACTTTCTTCCACC 205
Query 247 ATCCGTCTGGTCGTTTCTCCGATGGCCGCCTCATCATCGACTTCATTGCTGAATTCT-TA 305
| || | || |||| || ||| |||||| ||||||| ||||| || |||||||| | |
Sbjct 206 AACCAACCGGCCGTTCCTGCGACGGCCGCATCATCATGGACTTTATCGCTGAATT-TGT- 263
Query 306 GGG-ATTCCACATGTGCCTCCGTT--TTATGGATCTAAAAATGGAAACTTTGAGAAAGGA 362
||| |||| |||||||||| || || |||||||||||||||||||||||| || ||
Sbjct 264 GGGCCTTCCTTATGTGCCTCC-TTACTT-TGGATCTAAAAATGGAAACTTTGATAAGGGC 321
Query 363 GTTAATTTTGCGGTGGGAGGAGCAACAGCACTAGAATGTT-CTGTTCTTGA-GGAGAAAG 420
|||||||| ||||| | |||||||| ||||| ||| ||| || ||| | | | ||| ||
Sbjct 322 GTTAATTTCGCGGTAGCTGGAGCAACGGCACTGGAAAGTTCCT-TTC-TCATGAAGAGAG 379
Query 421 GAACTCATTGTTCTCAAAGCAATATTAGTTTAGGAAACCAGCTTAAGAGCTTCAAAG-AG 479
||| ||| | | || | ||| ||||||||||| ||||||||||||||| ||| |
Sbjct 380 GAATTCA---TCCACACACCAACGTTAGTTTAGGAGTTCAGCTTAAGAGCTTC-AAGAAA 435
Query 480 AGTTTACCATATCTTTGTGGCTCCTCATCACCAGATTGTAGAGATATGATTGAAAATGCA 539
||||||||| || | ||||||| ||| || ||||||||||||||||||||| ||||||
Sbjct 436 AGTTTACCAAATATATGTGGCT-CTC--CATCAGATTGTAGAGATATGATTGGAAATGC- 491
Query 540 TTT-ATTCTCATTGGAGAAATTGGAGGGAATGATTACAACTTCCCATTATTTGATCGCAA 598
||| |||||||| ||||| ||||||||||||||||| || |||||||| || || |||||
Sbjct 492 TTTGATTCTCATGGGAGAGATTGGAGGGAATGATTATAATTTCCCATTCTTCGAACGCAA 551
Query 599 GA-ACATTGAGGAAGTCAAAGAGCTGGTTCCCCTTGTGATCACTACTATTTCTTCGGCGA 657
| ||| ||||||| |||||||||||||| |||||||| ||||||||||||| || |
Sbjct 552 -ACCCATCAAGGAAGTTAAAGAGCTGGTTCCGTTTGTGATCGCTACTATTTCTTCTGCAA 610
Query 658 TCTCGGAGTTGGTTGATATGGGAGCAAGAACATTCCTAGTTCCTGGAAATTTTCCACT-T 716
|| |||||||| ||| |||||| | || ||| || ||||| || ||| | |||| || |
Sbjct 611 TCACGGAGTTGATTGGTATGGGGGGAAAAACCTTTCTAGTGCCCGGAGA-GTTCC-CTAT 668
Query 717 -GGATGCTCTGTAGCCTATTTGACGTTATA-CGAAACACCAAACAAAGAAGAATACAATC 774
|||||||| |||| ||||||||| ||||| | ||||| ||||||| ||||||||| |||
Sbjct 669 CGGATGCTCAGTAGTCTATTTGACATTATATC-AAACATCAAACAAGGAAGAATACGATC 727
Query 775 CTCTAACAGGATGTTTGACATGGCTGAACGACTTT-TCAGTATACCACAACGAGCAGCTT 833
|| ||||||||||||||| |||||||||| | ||| | | |||||||| | |||| |||
Sbjct 728 CTTTAACAGGATGTTTGAAATGGCTGAACAAGTTTGGC-GAATACCACAGCCAGCAACTT 786
Query 834 CAAG-CAGAACTCAAAAGACTTAGGAATCTTTACCCTCATGTCAACATCATATATGGTGA 892
||| | |||||||| ||||||||||| || |||||||||||||||||||||| | |||
Sbjct 787 -AAGACGGAACTCAACAGACTTAGGAAGCTCAACCCTCATGTCAACATCATATACGCTGA 845
Query 893 CTACTACAATACTCTGTTGCGCCTTATGCAAGAACCATCCAAATTCGGGCTCATGGACAG 952
||||||||| |||| ||||||||| | |||||||| ||||||||||| ||||||||||
Sbjct 846 CTACTACAACGCTCTCTTGCGCCTTTTTAAAGAACCAGCCAAATTCGGGTTCATGGACAG 905
Query 953 ACCTTTGCCCGCTTGTTGCGGGT-TAGGAGGACCATACAACTTCACCTTTAGTATAAAAT 1011
||| |||| ||||||||| ||| |||||||||| |||||||||| ||| | || |||||
Sbjct 906 ACCCTTGCATGCTTGTTGC-GGTATAGGAGGACCGTACAACTTCAACTTCACTAGAAAAT 964
Query 1012 GTGGGAGTAAAGGAGTTGAATATTGT-AGTGATCCTTCGAAGTATGTGAATTGGGACGGC 1070
|||||||| ||||||||||| |||| || |||||||| ||||||||| |||||||||
Sbjct 965 GTGGGAGTGTAGGAGTTGAATCTTGTAAG-GATCCTTCAAAGTATGTGGGCTGGGACGGC 1023
Query 1071 ATTCATATGACTGAGGCTGCATACAAATGGATATCCGAGGGCGTACT-AACAGGGCCATA 1129
|||||||||||||||||||||||||||||||| | || || |||| || ||| || ||
Sbjct 1024 GTTCATATGACTGAGGCTGCATACAAATGGATAGCTGATGGAATACTCAA-AGGACCGTA 1082
Query 1130 TGCGATTCCTCCTTTCAATTGGTCATGCCTC-GACTCTAAGATTAAGAACAATGAGTCAT 1188
||||||||||||||| || |||| |||||| || ||| ||||||||||||| |||||||
Sbjct 1083 TGCGATTCCTCCTTTTGATCGGTCCTGCCTCAGA-TCTGAGATTAAGAACAAGGAGTCAT 1141
Query 1189 TACACACACAAT 1200
|| ||| |||||
Sbjct 1142 TAGACAAACAAT 1153
> Ahg336556 jgi|Araly1|336556|fgenesh1_pg.C_scaffold_1003121
Length=1185
Score = 857 bits (464), Expect = 0.0
Identities = 944/1171 (81%), Gaps = 51/1171 (4%)
Strand=Plus/Plus
Query 66 AGCTTCTTTATATCTACT-TTTTTAATCACTGTC-GTGACCTCGCAAACTCGA-TG-CCG 121
||| ||||| ||||| || ||||| ||||| || || | |||| || | | | || | |
Sbjct 40 AGCCTCTTTTTATCTTCTCTTTTT-GTCACTATCGGT-AGCTCGGAATCAC-AGTGTCAG 96
Query 122 AAATTTCAAGTCGATCATCAGTTTCGGCGACTCGATTACTGATACTGGAAACTTACTCGG 181
|| ||| |||||||||||||||| ||||| || ||| | || || |||||||| ||| |
Sbjct 97 -AACTTCGAGTCGATCATCAGTTTTGGCGATTCAATTGCCGACACCGGAAACTTGCTCCG 155
Query 182 CCTCTCTAG-TCCTAACGATCTTCC--TGAGTCAGCCTTTCCGCCATACGGAGAAACCTT 238
||||| | || | || ||||||| |||| | || ||||| || |||||||| || ||
Sbjct 156 TCTCTC-GGATCGTTACAATCTTCCTATGAG-C-GCATTTCCACCGTACGGAGAGACTTT 212
Query 239 CTTCCACCATCCGTCTGGTCGTTTCTCCGATGGCCGCCTCATCATCGACTTCATTGCTGA 298
|||||||||||| | |||||||||||||| ||||||||||| || |||||||| |||||
Sbjct 213 CTTCCACCATCCAACCGGTCGTTTCTCCGACGGCCGCCTCATTATTGACTTCATCGCTGA 272
Query 299 ATTCTTAGGGATTCCACATGTGCCTCCGTT--TTATGGATCTAAAAATGGAAACTTTGAG 356
||| || ||| |||| |||| ||||| || || ||||||| ||||||||||||||||
Sbjct 273 ATTTTTGGGGCTTCCTTATGTTCCTCC-TTACTT-CGGATCTATAAATGGAAACTTTGAG 330
Query 357 AAAGGAGTTAATTTTGCGGTGGGAGGAGCAACAGCACTAGAATGTTC-TGTTCTTGAGGA 415
||||||||||||||||| || | |||||| ||| | ||| | || | |||| || ||
Sbjct 331 AAAGGAGTTAATTTTGCCGTAGCCTCAGCAACGGCATTGGAAAGCTCAT-TTCTAGAAGA 389
Query 416 GAAAGGA-ACTCATTGTTCTCAAAGCAATATTAGTTTAGGAAACCAGCTTAAGAGCTTCA 474
|| |||| || |||||| |||| ||||||||||||||||| ||||||||||||||||
Sbjct 390 GAGAGGATAC-CATTGTCCTCA---CAATATTAGTTTAGGAATTCAGCTTAAGAGCTTCA 445
Query 475 AAGAGAGTTTACCATATCTTTGTGGCTCCTCATCACCAGATTGTAGAGATATGATTGAAA 534
| |||||||||||| |||| ||||||| | | || ||||||||||||| ||||||| ||
Sbjct 446 AGGAGAGTTTACCAAATCTATGTGGCT--T-ACCATCAGATTGTAGAGAAATGATTGGAA 502
Query 535 ATGCATTT-ATTCTCATTGGAGAAATTGGAGGGAATGATTACAACTTCCCATTATTTGAT 593
|||| ||| |||||||| ||||| ||||||| ||| ||||| || |||||||| || ||
Sbjct 503 ATGC-TTTGATTCTCATGGGAGAGATTGGAGCGAACGATTATAATTTCCCATTGTTCGAA 561
Query 594 CGCAAGAACATT-GAGGAAG-TCAAAGAGCTGGTTCCCCTTG-TGATCACTACTATTTCT 650
| || || | || || ||| |||||||||| ||||| ||| |||| | ||||||||||
Sbjct 562 CTCA-GACCCTTAGAC-AAGGTCAAAGAGCTCGTTCCG-TTGGTGATTAGTACTATTTCT 618
Query 651 TCGGCGATCT-CGGAGTTGGTTGATATGGGAGCAAGAACATTCCTAGTTCCTGGAAATTT 709
|| ||||| | |||| ||| ||| |||||| | ||||||||| | || || || ||
Sbjct 619 TCAGCGAT-TACGGATTTGATTGGTATGGGGGGAAGAACATTTATGGTGCCCGGCGGGTT 677
Query 710 TCCACTTGGATGCTCTGTAGCCTATTTGACGTTATACGAAACACCAAACAAAGAAGAATA 769
|| || |||||||| ||||| | |||||| |||||| ||||| |||||| ||||||||
Sbjct 678 CCCTCTCGGATGCTCAGTAGCATTTTTGACATTATACCAAACATCAAACATGGAAGAATA 737
Query 770 CAATCCTCTAACAGGATGTTTGACATGGCTGAACGACTTTTCAGTATACCACAACGAGCA 829
||||| ||||||||||||||| |||||| ||| | ||| || |||||||| ||||||
Sbjct 738 TGATCCTTTAACAGGATGTTTGAAATGGCTAAACAAGTTTGGAGAATACCACAGCGAGCA 797
Query 830 GCTTCAAGCAGAACTCAAAAGACTTAGGAATCTTTACCCTCATGTCAACATCATATATGG 889
|||||| ||||||||||| ||||| ||||| || ||||||||||||||||||||||||
Sbjct 798 GCTTCAGGCAGAACTCAAGAGACTCAGGAAACTCAACCCTCATGTCAACATCATATATGC 857
Query 890 TGACTACTACAATACT-CTGTTGCGCCTTATGC-AAGAACCATCCAAATTCGGGCTCATG 947
||||||||||||| || | |||||||||| || |||||||| |||||| ||| ||||
Sbjct 858 TGACTACTACAATGCTTC-GTTGCGCCTTG-GCCAAGAACCAACCAAATACGGATTCATA 915
Query 948 GACAGAC-CTTTGCCCGCTTGTTGCGG-GTTAGGAGGACCATACAACTTCACCTTTAGTA 1005
|||||| ||| | | ||||||||||| || ||||||||| |||||||||| ||| ||||
Sbjct 916 AACAGACACTT-GTCAGCTTGTTGCGGTGT-AGGAGGACCGTACAACTTCAACTTCAGTA 973
Query 1006 TAAAATGTGGGAGTAAAGGAGTTGAATATTGTAGTGATCCTTCGAAGTATGTGAATTGGG 1065
|| ||||||||| |||||| |||| ||||| ||||||||| ||||||||| ||||
Sbjct 974 GAAGTTGTGGGAGTGTAGGAGTGGAATCTTGTAATGATCCTTCAAAGTATGTGGCCTGGG 1033
Query 1066 ACGGCATTCATATGACTGAGGCTGCATACAAATGGATATCCGAGGGCGTACT-AACAGGG 1124
| ||| |||||||||||||||||||||| |||| ||| | || || |||| ||| ||
Sbjct 1034 ATGGCCTTCATATGACTGAGGCTGCATATAAATCGATGGCTGATGGATTACTCAAC-GGA 1092
Query 1125 CCATATGCGATTCCTCCTTTCAATTGGTCATGCCTC-GACTCTAAGATTAAGAACAATGA 1183
||||||||||||||||||||||||||||||| || | ||| ||||||||||| || ||
Sbjct 1093 ACATATGCGATTCCTCCTTTCAATTGGTCATGTCTTAG-CTCCAAGATTAAGAAGAAGGA 1151
Query 1184 -GTCATTACACACACAATATTCTTTGATGAA 1213
||||||| | | ||||||||||||||||||
Sbjct 1152 AGTCATTAGAAATACAATATTCTTTGATGAA 1182
> Ahg912693 jgi|Araly1|912693|Al_scaffold_0001_2947
Length=4179
Score = 268 bits (145), Expect = 6e-71
Identities = 674/916 (74%), Gaps = 90/916 (10%)
Strand=Plus/Plus
Query 199 ATCTTCCTGAGTCAGCCTTTCCGCCATACGGAGAAACCTTCTTCCA-CCATCCGTCTGGT 257
|||||||| | || || |||| || ||||| |||||||||||||| || ||| || ||
Sbjct 3176 ATCTTCCTCAATCCGCATTTCTTCCTTACGGCGAAACCTTCTTCCATCC-TCCCTCCGGC 3234
Query 258 CGTTTCTCCGATGGCCGCCTCATCATCGACTTCATTGCTGAATTCTTAGGGATTCCACAT 317
|||| ||| |||||||| ||||||||||||||||||||||||||||| |||| | | |
Sbjct 3235 CGTTACTCGGATGGCCGTCTCATCATCGACTTCATTGCTGAATTCTT-GGGACTAC-C-- 3290
Query 318 GTGCCT-CCGTTTTA-T--GGATCTAAAAATG-GAAACTTTGAGAAAGGAGTT-AATTTT 371
|| | | || | ||| | ||||| |||| | || |||||| |||| | | |||||
Sbjct 3291 GTACGTACCATATTACTTCGGATCCCAAAACGTGAG-CTTTGATCAAGG-GATCAATTTC 3348
Query 372 GCGGTGGGA-GGAGCAACAGCACTAGAATGTTCTGTT-CTTGAGGAGAAAGGAACTCA-T 428
|||||| | || ||||| ||| | || | | ||| |||| ||| ||||||| | | |
Sbjct 3349 GCGGTGT-ATGGTGCAACTGCATTGGACCGAGC-GTTTCTTGTGGAAAAAGGAATTGAAT 3406
Query 429 T-G-TTCTCAAAGCAATATTAGTTTAGGAAACCAGCTTAAGAGCTTCAAAGAGAGTTTAC 486
| | || ||| |||| |||||||| | ||| |||| | ||||||| ||| |||||
Sbjct 3407 TTGATT-TCAC--CAATGTTAGTTTAAGTGTTCAGATTAACAACTTCAAACAGATTTTAC 3463
Query 487 CATATC-TTTGTGGCTCCTCATCACCAGATTGTAGAGATATGATTGAAAA-T-GCATTTA 543
| || | |||| ||| || || | ||||||||||| ||| ||| | | | || | |
Sbjct 3464 C-TAACCTTTGCACCTCGTCTTCTCGTGATTGTAGAGAGATGCTTGGAGACTCGC-TG-A 3520
Query 544 TTCTCATTGGAGAAATTGGAGGGAATGATTACAACTT-CCCATTATTTGATCGCAAGAAC 602
| || || ||||| ||||||| |||||| || || || ||| || ||||| |||| ||
Sbjct 3521 TACTTATGGGAGAGATTGGAGTGAATGACTATAA-TTACCCGTTCTTTGAAGGCAA-AAG 3578
Query 603 -ATTGAGGAAGTCAAAGAGCTGGTTCCCCTTGTGATCACTA-CTATTTCTTCGGCGATC- 659
|| | ||| |||||||||| ||||| || || |||| | |||||||||| |||||
Sbjct 3579 TATCAATGAAATCAAAGAGCTTGTTCCTCTAGTCATCAA-AGCTATTTCTTCTGCGATTG 3637
Query 660 TCGGAGTTGGTTGATAT-GGGAGCAAGAACATTCCTAGTTCCTGGAAATTTTCCACTT-G 717
| ||| ||| ||||| | ||| |||| |||||| || || || ||||| || ||| || |
Sbjct 3638 T-GGATTTGATTGATTTAGGGGGCAA-AACATTTCTGGTCCCCGGAAACTTCCCA-TTAG 3694
Query 718 GATGCTCTGTAGCCTAT-TTGACGT-TATA-CGAAACAC-CAAACA-AAGAAGAATACAA 772
|||| | | || ||| || || | ||| | | || | | || ||||||| ||| |
Sbjct 3695 GATGTTATCCCGCGTATCTT-AC-TCTATTTC-AGAC-CGCGG-CAGAAGAAGACTACGA 3749
Query 773 TCCT-CTAACAGGATGTTTGAC-ATGGCTGAACGACTTT-TC-AGTATACCACAACGAGC 828
||| | | |||| ||| | || |||||| ||||| ||| | || || | ||||||| |
Sbjct 3750 CCCTTCCA-CAGGTTGTCT-ACGATGGCTCAACGAATTTGTAGAGCAT-C-ACAACGACC 3805
Query 829 AGCTTCAAG-CAGAACTCAAAAGACTT-AGGAATCTTTACCCTCATGTCAACATCATATA 886
|||| |||| |||||||||||||||| | ||| || ||| ||||||||||||||| ||
Sbjct 3806 AGCT-CAAGACAGAACTCAAAAGACTCCAAGAA-CTATACGATCATGTCAACATCATTTA 3863
Query 887 TGGTGACTACTACAATACTCTGTTGCGCCT-T-ATGC-AAGAACCA-TCCAAAT-TCGGG 941
| ||||||||||| |||| || ||| | || | |||||||| || |||| | |||
Sbjct 3864 CGCCGACTACTACAA--CTCT-TTATTCCTGTTATACCAAGAACCAGTC-AAATAT-GGG 3918
Query 942 CTCATGGA-CAGACCTTTGCCCGCTTGTTGCGGGTTAGGAGGACCATACAACTTCACCT- 999
| | ||| | |||||||| | |||||||| ||| | ||||| | |||||||||||| |
Sbjct 3919 TTTA-GGAACCGACCTTTGGCTGCTTGTTGTGGGATCGGAGGTCAATACAACTTCAC-TA 3976
Query 1000 TTAGTATAAAA-TGTGGGAGTAAAG-GA-GTT-GAATATTGT-AGTGATCCTTC-GAAGT 1053
||||| || | ||||| | | || || ||| | |||||| | ||||||| ||| |
Sbjct 3977 TTAGTG-AAGAGTGTGG-AC-ACAGAGAAGTTAGC-TATTGTCAAA-ATCCTTCTGAA-T 4030
Query 1054 ATGTGAATTGGGACGG 1069
||||||| ||||||||
Sbjct 4031 ATGTGAACTGGGACGG 4046
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51656552535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5