BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G27370.1 Length=943 Score E Sequences producing significant alignments: (Bits) Value Ahg933148 jgi|Araly1|933148|scaffold_401136.1 1090 0.0 > Ahg933148 jgi|Araly1|933148|scaffold_401136.1 Length=710 Score = 1090 bits (590), Expect = 0.0 Identities = 675/715 (94%), Gaps = 10/715 (1%) Strand=Plus/Plus Query 76 TCTTCTTCTTCTAAATTTTCTTCCATGGATATCGAAAAGGCAGGGAGCagaagagaagaa 135 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1 TCTTCTTCTTCTAAATTTTCTTCCATGGATATCGAAAAGGCAGCGAGCAGAAGAGAAGAA 60 Query 136 gaagaaCCCATTGTTCAAAGGCCAAAGCTAGACAAAGGCAAAGG-AAAGGCTCATGTATT 194 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||| || || Sbjct 61 GAAGAACCCATTGTTCAAAGGCCAAAGCTAGACAAAGGCAAAGGCAAA-GCTCACGTCTT 119 Query 195 TGCTCCTCCTATGAACTACAACCGGATCATGGACAAACACAAGCAAGAAAAGATGAGC-C 253 ||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||| | Sbjct 120 TGCTCCTCCTATGAACTACAATCGGATCATGGACAAACACAAGCAAGAAAAGGTTAGCGC 179 Query 254 CTGCCGGGTGGAAAAGAGGTGTAGCAATCTTCGATTTTGTTCTTAGACTCATCGCAGCAA 313 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 180 C-GCCGGGTGGAAAAGAGGTGTAGCGATCTTCGATTTTGTTCTTAGACTCATCGCAGCCA 238 Query 314 TCACAGCTATGGCTGCTGCAGCAAAGATGGCGACAACGGAAGAGACTCTTCCTTTCTTCA 373 |||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 239 TCACGGCAATGGCTGCTGCAGCGAAGATGGCGACAACGGAAGAGACTCTTCCTTTCTTCA 298 Query 374 CTCAGTTCTTGCAGTTCCAAGCTGACTACACTGATCTACCAACTATGTCATCTTTTGTGA 433 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 299 CTCAGTTCTTGCAGTTCCAAGCTGAATACACTGATCTACCAACTATGTCATCTTTTGTGA 358 Query 434 TAGTAAACTCAATCGTGGGTGGCTACCTAACCCTCTCATTGCCTTTTTCTATAGTCTGTA 493 | || |||||||||||||| ||||||||||||||||||||||||||||| || ||||||| Sbjct 359 TCGTGAACTCAATCGTGGGCGGCTACCTAACCCTCTCATTGCCTTTTTCCATTGTCTGTA 418 Query 494 TCCTCCGCCCCCTCGCGGTGCCGCCTAGGCTATTCCTGATCTTATGTGATACGG-TGATG 552 |||||||||| ||||||||||| |||||||||||||||||| ||||||| |||| | ||| Sbjct 419 TCCTCCGCCCTCTCGCGGTGCCTCCTAGGCTATTCCTGATCATATGTGACACGGCT-ATG 477 Query 553 ATGGGCCTCACCCTGATGGCGGCATCCGCTTCCGCAGCCATAGTTTACTTGGCGCACAAC 612 |||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 478 ATGGGCCTCACCATGATGGCGGCATCCGCTTCTGCAGCCATAGTTTATTTGGCGCACAAC 537 Query 613 GGGAATTCAAGCTCGAACTGGCTTCCGGTTTGCCAGCAGTTTGGTGACTTTTGCCAAGGA 672 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 GGGAATTCAAGCTCGAACTGGCTTCCGGTTTGCCAGCAGTTTGGTGACTTTTGCCAAGGA 597 Query 673 ACGAGCGGTGCCGTGGTGGCATCCTTTATTGCTGCGACTCTTCTCATGTTCCTCGTCATC 732 ||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 598 ACGAGTGGCGCCGTGGTGGCATCCTTTATTGCTGCGACTCTTCTCATGTTCCTTGTCATC 657 Query 733 CTATCTGCATTTGCTCTCAAGAGAACAACCTGAAAACTT-GGAT-TGATCCTCTT 785 |||||||||||||| ||||||||| | ||||||||| || |||| | |||||||| Sbjct 658 CTATCTGCATTTGCACTCAAGAGATCGACCTGAAAA-TTCGGATAT-ATCCTCTT 710 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34996837806 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5