BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27370.1
Length=943
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933148 jgi|Araly1|933148|scaffold_401136.1 1090 0.0
> Ahg933148 jgi|Araly1|933148|scaffold_401136.1
Length=710
Score = 1090 bits (590), Expect = 0.0
Identities = 675/715 (94%), Gaps = 10/715 (1%)
Strand=Plus/Plus
Query 76 TCTTCTTCTTCTAAATTTTCTTCCATGGATATCGAAAAGGCAGGGAGCagaagagaagaa 135
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 TCTTCTTCTTCTAAATTTTCTTCCATGGATATCGAAAAGGCAGCGAGCAGAAGAGAAGAA 60
Query 136 gaagaaCCCATTGTTCAAAGGCCAAAGCTAGACAAAGGCAAAGG-AAAGGCTCATGTATT 194
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||| || ||
Sbjct 61 GAAGAACCCATTGTTCAAAGGCCAAAGCTAGACAAAGGCAAAGGCAAA-GCTCACGTCTT 119
Query 195 TGCTCCTCCTATGAACTACAACCGGATCATGGACAAACACAAGCAAGAAAAGATGAGC-C 253
||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||| |
Sbjct 120 TGCTCCTCCTATGAACTACAATCGGATCATGGACAAACACAAGCAAGAAAAGGTTAGCGC 179
Query 254 CTGCCGGGTGGAAAAGAGGTGTAGCAATCTTCGATTTTGTTCTTAGACTCATCGCAGCAA 313
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 180 C-GCCGGGTGGAAAAGAGGTGTAGCGATCTTCGATTTTGTTCTTAGACTCATCGCAGCCA 238
Query 314 TCACAGCTATGGCTGCTGCAGCAAAGATGGCGACAACGGAAGAGACTCTTCCTTTCTTCA 373
|||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 239 TCACGGCAATGGCTGCTGCAGCGAAGATGGCGACAACGGAAGAGACTCTTCCTTTCTTCA 298
Query 374 CTCAGTTCTTGCAGTTCCAAGCTGACTACACTGATCTACCAACTATGTCATCTTTTGTGA 433
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 299 CTCAGTTCTTGCAGTTCCAAGCTGAATACACTGATCTACCAACTATGTCATCTTTTGTGA 358
Query 434 TAGTAAACTCAATCGTGGGTGGCTACCTAACCCTCTCATTGCCTTTTTCTATAGTCTGTA 493
| || |||||||||||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 359 TCGTGAACTCAATCGTGGGCGGCTACCTAACCCTCTCATTGCCTTTTTCCATTGTCTGTA 418
Query 494 TCCTCCGCCCCCTCGCGGTGCCGCCTAGGCTATTCCTGATCTTATGTGATACGG-TGATG 552
|||||||||| ||||||||||| |||||||||||||||||| ||||||| |||| | |||
Sbjct 419 TCCTCCGCCCTCTCGCGGTGCCTCCTAGGCTATTCCTGATCATATGTGACACGGCT-ATG 477
Query 553 ATGGGCCTCACCCTGATGGCGGCATCCGCTTCCGCAGCCATAGTTTACTTGGCGCACAAC 612
|||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 478 ATGGGCCTCACCATGATGGCGGCATCCGCTTCTGCAGCCATAGTTTATTTGGCGCACAAC 537
Query 613 GGGAATTCAAGCTCGAACTGGCTTCCGGTTTGCCAGCAGTTTGGTGACTTTTGCCAAGGA 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGGAATTCAAGCTCGAACTGGCTTCCGGTTTGCCAGCAGTTTGGTGACTTTTGCCAAGGA 597
Query 673 ACGAGCGGTGCCGTGGTGGCATCCTTTATTGCTGCGACTCTTCTCATGTTCCTCGTCATC 732
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 598 ACGAGTGGCGCCGTGGTGGCATCCTTTATTGCTGCGACTCTTCTCATGTTCCTTGTCATC 657
Query 733 CTATCTGCATTTGCTCTCAAGAGAACAACCTGAAAACTT-GGAT-TGATCCTCTT 785
|||||||||||||| ||||||||| | ||||||||| || |||| | ||||||||
Sbjct 658 CTATCTGCATTTGCACTCAAGAGATCGACCTGAAAA-TTCGGATAT-ATCCTCTT 710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34996837806
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5