BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27385.1
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481639 jgi|Araly1|481639|fgenesh2_kg.4__699__AT2G27385.1 1003 0.0
> Ahg481639 jgi|Araly1|481639|fgenesh2_kg.4__699__AT2G27385.1
Length=718
Score = 1003 bits (543), Expect = 0.0
Identities = 645/693 (93%), Gaps = 11/693 (2%)
Strand=Plus/Plus
Query 44 CAATGGCTTTGAGGTCACATTTTC-TAGCTGTGTTCCTTTTCTCAGCAACTCTCTCATCT 102
||||||||||| ||||||| |||| ||||| ||||||||||||| |||||||||||||||
Sbjct 31 CAATGGCTTTGCGGTCACA-TTTCTTAGCTTTGTTCCTTTTCTCGGCAACTCTCTCATCT 89
Query 103 TGCCTCGTAGTCTCGGCTTCGCTCGTGGAAGGGAAAGTCTCTTGTTTCGACTGTCCCAAT 162
|||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 90 TGCCTCGTGGTCTCGGCTTCCCTCGTCGAAGGAAAAGTCTCTTGTTTCGACTGTCCCAAT 149
Query 163 GATTATGATTATTCAGGAATCACGGTCGGAGTTAGCTGTAGCCACA-CAAACACGCGGTT 221
|||||||||||||||||||||| |||||| |||||||||||||||| |||| |||| ||
Sbjct 150 GATTATGATTATTCAGGAATCATGGTCGGTGTTAGCTGTAGCCACACCAAA-ACGCATTT 208
Query 222 CACTGTAACAACTGACAAGAAGGGTGACTTCATATCGGAACTTCCCTCAAAGATCGAATC 281
||| |||||||| |||||||||||||| ||||| ||| |||||||||||| |||||||||
Sbjct 209 CACCGTAACAACCGACAAGAAGGGTGAGTTCATGTCGAAACTTCCCTCAAGGATCGAATC 268
Query 282 AAACTGTGAAGCAGAACTCCAAGGCAGCGTCAAGCAACTTTATGCTTCCAAGAATAACGT 341
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 269 AAACTGTGAAGCAGAACTCCAAGGCAGCTTCAAGCAACTTTATGCTTCCAAGAATAACAT 328
Query 342 TAAGTCGAAGATTGTTAAGCTTGGCGGTGACAAATATGGTCTCTCTTCCAAGTTGTTCTT 401
||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||| ||||
Sbjct 329 TAAGTCGAAGATTGTTAAGCTTGATGGTGATAAATACGGTCTCTCTTCAAAGTTGATCTT 388
Query 402 CTTGAAATCATGTCCAAGAAGCTTCGGATCTTTTAGTTCGTCCAAGACCGTTGATTTACC 461
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 389 CTTGAAATCATGTCCAAGAAGCCTCGGATCTTTTGGTTCGTCCAAGACCGTTGATTTACC 448
Query 462 AGTTCCTCCCGAGTGGGGGCTGGCTCCGACCAGTTATTACGTTCCTTTCTTGCCCATCAT 521
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 449 TGTTCCTCCCGAGTGGGGGCTGGCTCCGACCAGTTATTACGTTCCTTTCTTTCCCATCAT 508
Query 522 CGGTATCCCAT--GATAC-GCACCGTTTTAATCCTTGTTTTGTGTGTTTTATGTAATATA 578
||||||||||| || || | || ||||||||||||||||||||||||| ||||||||||
Sbjct 509 CGGTATCCCATAAGACACAGTACTGTTTTAATCCTTGTTTTGTGTGTTTCATGTAATATA 568
Query 579 TTCAA-ATTATATATGTGTAGAGGACATGTAACTATCTTAGCTGTTCTTTTCAAGTTCAT 637
|| || ||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 569 TT-AATATTATGTAAGTGTAGAGGACATGTAACTATCTTAGCTGTTCTTTTCAAGTCCAT 627
Query 638 GCTTGAACTGAAGTTTGTGTGTGAACTTAGTGTCTGAAGATGGTTTATGTTGTGACCCAT 697
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 628 GCTTGAACTGAAGTTTGTGTGTGATCTTAGTGTCTGAAGATGGTTTATGTTGTGACCC-T 686
Query 698 TTATGAAGCATAATTTTAATATGAAATCTGTTA 730
|||||||||||||||| ||||||||||||||||
Sbjct 687 TTATGAAGCATAATTT-AATATGAAATCTGTTA 718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27067271070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5