BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27410.1
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933779 jgi|Araly1|933779|scaffold_401767.1 664 0.0
Ahg933836 jgi|Araly1|933836|scaffold_401824.1 586 1e-166
> Ahg933779 jgi|Araly1|933779|scaffold_401767.1
Length=1048
Score = 664 bits (359), Expect = 0.0
Identities = 521/597 (87%), Gaps = 20/597 (3%)
Strand=Plus/Plus
Query 5 ACGCGTGCGC-TCGAACAACAAAGATCAATCACTTCCGTGGAACCAGTACTACACAAAAC 63
|||||||| | ||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 297 ACGCGTGC-CATCGAACAACAAAGATCAGTCACTTCCGTGGAACCAGTACT--ACAAAAC 353
Query 64 CCTAATC-GAGGTTTAGAACCGTCTCCTTCTTCTTATGTTACTCGTCGGTCCAAAGAAAA 122
||||||| | |||||||| | |||||||||||||| |||| |||||| ||||| |||||
Sbjct 354 CCTAATCTG-GGTTTAGAGTCTTCTCCTTCTTCTTACGTTAGTCGTCGTTCCAAGGAAAA 412
Query 123 ACGTCCCATTAATGTGGAAAAGAGAAGTC-ACAAGAAACGCAAAATCATTTGTCCTTTAG 181
|||||||||||| |||||||||||||||| | |||||||||||| || || |||||||||
Sbjct 413 ACGTCCCATTAACGTGGAAAAGAGAAGTCGA-AAGAAACGCAAAGTCGTTAGTCCTTTAG 471
Query 182 AGGAGGAACCCATTCAAACAACTCCACCGGAGTGGCTCTTGAACGTCATGAGGAGAGAAG 241
||| |||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||
Sbjct 472 AGGTGGAACCAATTCAAACAACTCCATCGGAGTGGCTTTTGAACGTGATGAGGAGAGAAG 531
Query 242 AGAACGGTTACAATCCGAAGTTGATCTCAACGAGGCAACTGTATAAGACCGATCTCa-aa 300
||||||| |||||||||||| ||||||||||||||||||| | | |||| ||||||| ||
Sbjct 532 AGAACGGCTACAATCCGAAGCTGATCTCAACGAGGCAACTCTTTCAGACTGATCTCAGAA 591
Query 301 aaaaCTGAAGCACGTCTCTCAGTTCCTTTTAAGCAGGTGA-AAACTCCGGACTTTTTGAC 359
| || |||||||||||||||| || ||||||||||| | || |||||||||||||||
Sbjct 592 CACAC-CAAGCACGTCTCTCAGTACCCTTTAAGCAGGTTATCAA-TCCGGACTTTTTGAC 649
Query 360 AGAGGACGAGACAAGAATCATACATGAGAATGCCATGAAGATTCGTGACAATGGTGTGCC 419
|||| | ||||||||||||||| |||| ||||||||||||||||||||| ||||||||
Sbjct 650 AGAGAATGAGACAAGAATCATAAATGAAAATGCCATGAAGATTCGTGACGATGGTGTGAG 709
Query 420 TGTGAATTTCGTGGATCCTGAGCTGAATAAGCATGTGCTTGAATTGAGGAAGTGGAAAAT 479
|||| |||| ||||||||| | | ||| ||||||| |||||| |||||||||||||| ||
Sbjct 710 TGTGGATTTGGTGGATCCTAATCGGAAGAAGCATGAGCTTGAGTTGAGGAAGTGGAAGAT 769
Query 480 GAAAGGAAACTGGAT-TTATGTCTTTGTTAAAGGTTGGAAAAACGTGCTTGATGCTTGTA 538
|| ||||||||| | |||| ||||||||||||||||||||| ||||||||||| ||
Sbjct 770 GAGTGGAAACTGG-TATTATAACTTTGTTAAAGGTTGGAAAAATGTGCTTGATGC---TA 825
Query 539 AGACGTTGTTTAAGGAAGACGACGTCTATCCTCTCTGGTCTTTCCGATCTGGAACAG 595
| | | |||||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct 826 ATA-G--CTTTAAGAAAGAAGACGTCTACCCTCTCTGGTCTTTCCGATCTGGAACAG 879
Score = 209 bits (113), Expect = 3e-53
Identities = 149/166 (90%), Gaps = 4/166 (2%)
Strand=Plus/Plus
Query 628 TCTGGCCGTGGAAACTCTCTTCCTGGCGGTGATGGCGCTTCTACTTCCGGTGAATCTGGT 687
|||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 882 TCTGGCCGTGGAAACTCTCTTCCTGGGGGCGATGGCGCTTCGACTTCCGGTGAATCTGGC 941
Query 688 CAGGTACCAT-TACC-CATTCCTCCGGCAAGATATTCTAGCAACTCCGGCCAAGGCTGTT 745
|||||||| | | || | ||||||||||||| | ||||| ||||||| ||||| ||||
Sbjct 942 CAGGTACC-TGTTCCTC-CTCCTCCGGCAAGAGAGTCTAGTTACTCCGGGCAAGGTTGTT 999
Query 746 CAGGAGAGAGCAGCTCTAGTTCTTCCTAATCATAACTCTGCTTATT 791
|||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1000 CAGGAGCGAGCAGCTCTAGTTCTTCCTAATCATAACTCTGCTTATT 1045
> Ahg933836 jgi|Araly1|933836|scaffold_401824.1
Length=1102
Score = 586 bits (317), Expect = 1e-166
Identities = 520/615 (85%), Gaps = 26/615 (4%)
Strand=Plus/Plus
Query 21 AACAAAGATCAATCACTTCCGTGGAACCAGTACTACACAAAACCCTAAT-CGAGGTTTAG 79
|||| |||||||| ||||||||| |||||||||| ||||||||||||| || | || ||
Sbjct 301 AACATAGATCAATTACTTCCGTGAAACCAGTACT--ACAAAACCCTAATCCG-GATTCAG 357
Query 80 AACCGTCTCCT-TCTTCTTATGTTACTCGTCGGTCCAAAG-AAAAAC---GTCCCATTAA 134
|| | ||| | || |||| || | | |||| |||| ||| |||||| || |||||||
Sbjct 358 AATCTTCT-ATGTCATCTTGTG-T-C-CGTCAGTCC-AAGAAAAAACGTTGTTCCATTAA 412
Query 135 TGTGGAAAAGAGAAGTCACAAGAAACGCAAAATCATTTGTCCTTTAGAGGAGGAACCCAT 194
|||||| ||||||||| ||||||| |||||| | || |||||||||||| |||||| ||
Sbjct 413 CGTGGAAGAGAGAAGTCGCAAGAAAAGCAAAACCGTTAGTCCTTTAGAGGTGGAACCTAT 472
Query 195 TCAAACAACTCCACCGGAGTGGCTCTTGAACGTCATGAGGAGAGAAGAGAACGGTTACAA 254
|||||| ||||| ||||| ||||| |||||||| |||||||||||||||||||| |||||
Sbjct 473 TCAAACGACTCCCCCGGATTGGCTTTTGAACGTGATGAGGAGAGAAGAGAACGGCTACAA 532
Query 255 TCCGAAGTTGATCTCAACGAGGCAACTGTATAAGACCGATCTCaaaaaaaC-TGAAGCAC 313
||| ||| ||||||||||||||||||||||||| || |||||| ||| | ||||||
Sbjct 533 TCCAAAGCTGATCTCAACGAGGCAACTGTATAACACTGATCTC-GCCGAACTTCAAGCAC 591
Query 314 GTCTCTCAGTTCCTTTTAAGCAGGTGAAAACTCCGGACTTTTTGACAGAGGACGAGACAA 373
| |||||||| ||||||| ||| ||||||||||||||||||||||||||||| |||||||
Sbjct 592 GCCTCTCAGTCCCTTTTAGGCAAGTGAAAACTCCGGACTTTTTGACAGAGGATGAGACAA 651
Query 374 GAATCA-TACATGAG-AATGCCATGAAGATTCGTGACAATGGTGTGCCTGTGAATTTCGT 431
||| | ||||| || ||||| |||||| || || | | |||||| |||| |||| ||
Sbjct 652 GAA-AATTACAT-AGAAATGCGATGAAGCTTTGTCCCCACGGTGTGAGTGTGGATTTGGT 709
Query 432 GGATCCTGAGCTGAATAAGCATGTGCTTGAATTGAGGAAGTGGAAAATGAAAGGAAACTG 491
||||||| | | ||| ||||||| ||||||||||||||||||||| |||| ||||||||
Sbjct 710 GGATCCTAATCGGAAGAAGCATGAGCTTGAATTGAGGAAGTGGAAGATGAGTGGAAACTG 769
Query 492 GATTTATGTCTTTGTTAAAGGTTGGAAAAACGTGCTTGATGCTTGTAAGACGTTGTTTAA 551
|| ||||||||||||||||||||||||||| ||||||||||| ||| | | |||||
Sbjct 770 GAATTATGTCTTTGTTAAAGGTTGGAAAAATGTGCTTGATGC---TAATA-G--CTTTAA 823
Query 552 GGAAGACGACGTCTATCCTCTCTGGTCTTTCCGATCTGGAACAGGCAAACTCTGTTTTGC 611
|||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 824 GGAAAAAGACGTCTATCCTCTCTGGTCTTTCCGATCTGGAACAGGAAAACTCTGTTTTGC 883
Query 612 TCTCACCCCTAAAAA 626
||||| |||||||||
Sbjct 884 TCTCATCCCTAAAAA 898
Score = 211 bits (114), Expect = 7e-54
Identities = 155/173 (90%), Gaps = 9/173 (5%)
Strand=Plus/Plus
Query 628 TCTGGCCGTGGAAACTCTCTTCCTGGCGGTGATGGCGCTTCTACTTCCGGTGAATCTGGT 687
|||||||||||||||||||||||| | || |||||||||||||||||| || ||||||||
Sbjct 927 TCTGGCCGTGGAAACTCTCTTCCTCGAGGCGATGGCGCTTCTACTTCCAGTAAATCTGGT 986
Query 688 CAGGTACCATT----A--CC-CATTC-C-TCCGGCAAGATATTCTAGCAACTCCGGCCAA 738
||||||||||| | || | ||| | ||||| |||| |||||||| |||||||||||
Sbjct 987 CAGGTACCATTAACCATTCCTCCTTCGCATCCGGAAAGAGATTCTAGCCACTCCGGCCAA 1046
Query 739 GGCTGTTCAGGAGAGAGCAGCTCTAGTTCTTCCTAATCATAACTCTGCTTATT 791
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 GGCTGTTCAGGAGAGAGCAGCTCTAGTTCTTCCTAATCATAACTCTGCTTATT 1099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36902983656
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5