BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27420.1
Length=1309
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481640 jgi|Araly1|481640|fgenesh2_kg.4__700__AT2G27420.1 1901 0.0
Ahg348033 jgi|Araly1|348033|fgenesh1_pg.C_scaffold_5001425 761 0.0
Ahg473117 jgi|Araly1|473117|fgenesh2_kg.1__3071__AT1G29110.1 75.0 1e-12
> Ahg481640 jgi|Araly1|481640|fgenesh2_kg.4__700__AT2G27420.1
Length=1259
Score = 1901 bits (1029), Expect = 0.0
Identities = 1176/1245 (94%), Gaps = 17/1245 (1%)
Strand=Plus/Plus
Query 18 AACCAAAACATTTGTATTATAAGAGTATTTTTATTGATACTATTTTTAAATTGTGCCCA- 76
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1 AACCAAAACATTTGTATTAAAAGAGTATTTTTATTGATACTATATTTAAATTGTGCCCAT 60
Query 77 T-A----C--A-TATTACCTATAGGGAATGGCGTCAACTATCATCTTCATTCTAACTAtt 128
| | | | |||||||| || |||||| |||||||||||||||||||||||||||||
Sbjct 61 TCATTTCCATACTATTACCTCTA-GGAATGTCGTCAACTATCATCTTCATTCTAACTATT 119
Query 129 tttttAAGTTACAGAACTTCGCTAGCTACATCTCGTGGTAGCCTTTTTGAAGCTTCTGCC 188
||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 120 TTTTTGAGTTACAGAACTTCGCTAGTTACATCTCGTGGTGGCCTTTTTGAAGCTTCTGCC 179
Query 189 ATTGAGAAACATGAGCAATGGATGGCTCGATTCAATCGCGTTTACTCTGACGAAACCGAG 248
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 180 ATTGAGAAACATGAGCAATGGATGGCTCGATTCAATCGCGTTTACTCTGACGAATCCGAG 239
Query 249 AAAAGAAATCGGTTTAATATCTTCAAGAAGAATTTGGAGTTCGTCCAGAACTTCAACATG 308
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 240 AAAAGAAATCGGTTCGATATCTTCAAGAAGAATTTGGAGTTCGTCCAGAGCTTCAACATG 299
Query 309 AATAATAAAATCACGTACAAGGTT-GATATCAACGAGTTCTCTGATCTTACGGACGAAGA 367
||||| || ||||||||||| ||| ||| ||||||||||||||||||| || ||||||||
Sbjct 300 AATAAGAACATCACGTACAA-GTTGGATGTCAACGAGTTCTCTGATCTCACTGACGAAGA 358
Query 368 ATTTCGGGCGACACACACTGGACTAGTTGTGCCCGAGGCTATAACCA-GAATTTCAACTC 426
|||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct 359 ATTTCGGGCGACACACACTGGACTAGTTGTGCCCGAGGAAATAA-CAGGAATTTCAACTC 417
Query 427 TGTCTTCGGGCAAAAACACGGTGCCGTTTAGATATGGTAATGTTAGTGATAATGGCGAGA 486
||||||| || | ||| |||||||||||||||||| ||||||||||||||| |||||| |
Sbjct 418 TGTCTTC-GG-ATAAA-ACGGTGCCGTTTAGATATCGTAATGTTAGTGATACTGGCGAAA 474
Query 487 GCATGGATTGGAGACAAGAGGGGGCTGTTACACCCGTTAAGTATCAAGGCCGATGTGGAG 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GCATGGATTGGAGACAAGAGGGGGCTGTTACACCCGTTAAGTATCAAGGCCGATGTGGAG 534
Query 547 GATGCTGGGCGTTTTCCGCGGTGGCGGCAGTGGAAGGCATTACAAAGATTACTAAAGGCG 606
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 535 GATGCTGGGCGTTTTCTGCGGTGGCGGCGGTGGAAGGCATTACAAAGATTACTAAAGGCG 594
Query 607 AGCTTGTATCGCTATCGGAGCAACAACTCTTAGACTGCGACAGAGACTACAATCAAGGAT 666
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 595 AGCTTGTATCGCTATCGGAGCAACAACTCTTAGACTGTGACAGAGACTACAATCAAGGAT 654
Query 667 GTCGTGGAGGGATAATGTCGAAAGCTTTCGAGTACATAATCAAAAACCAAGGCATCACTA 726
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GTCATGGAGGGATAATGTCTAAAGCTTTCGAGTACATAATCAAAAACCAAGGCATCACTA 714
Query 727 CTGAGGATAACTATCCATACCAAGAATCACAACAAACTTGTAGTTCATCAACTACCCTAT 786
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 715 CTGAGGATAACTATCCATATCAAGAATCACAACAAACTTGTAGTTCTTCAACTACCCTAT 774
Query 787 CATCGTCTTTTCGTGCAGCCACAATCAGCGGATATGAGACCGTTCCAATGAATAATGAGG 846
|||||||||| ||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 775 CATCGTCTTTCCGTGCTGCTACAATCAGCGGATATGAGACAGTTCCAATGAATAATGAGG 834
Query 847 AAGCGTTGCTACAAGCAGTGTCTCAACAGCCTGTTTCTGTGGGGATAGAAGGGACAGGGG 906
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 835 AAGCGTTGCTACAAGCGGTGTCTCAACAGCCTGTTTCCGTGGGGATAGAAGGGACAGGAG 894
Query 907 CCGCGTTTAGGCACTACTCGGGAGGGGTATTCAACGGAGAATGTGGGACGGATTTGCATC 966
|||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||
Sbjct 895 CCGCGTTTAGGCACTACTCGGGCGGGATATTCAATGGAGAATGTGGGACGGATTTGCATC 954
Query 967 ATGCGGTTACAATTGTTGGTTATGGAATGAGTGAAGAAGGGACTAAGTATTGGGTGGTGA 1026
||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 955 ATGCGGTCACGATTGTTGGTTATGGTATGAGTGAAGAAGGGACTAAGTATTGGGTGGTGA 1014
Query 1027 AGAATTCTTGGGGGGAAACTTGGGGAGAAAATGGTTACATGAGGATCAAGAGAGACGTGG 1086
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 1015 AGAATTCTTGGGGGGAAACTTGGGGAGAGGATGGTTTCATGAGGATCAAGAGAGACGTGG 1074
Query 1087 ATGCACCCCAAGGAATGTGTGGTTTGGCCATTCTTGCTTTCTATCCACTTGCTTGAATAC 1146
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1075 ATGCACCCCAAGGAATGTGTGGTTTGGCCATGCTTGCTTTCTATCCACTTGCTTGAATAC 1134
Query 1147 ATGAAGATTGATTGGGTGGGCTTGAAGTAGTTGAAAGTATTCTGATCAAAATGTTATTTT 1206
||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||
Sbjct 1135 ATGAAGATTGATTGGGTGGGCTTGAAGTAATTGAAAATACGCTGATCAAAATGTTATTTT 1194
Query 1207 GAGAAACATTATGGTCCCCATGTTTTCGTGCAAATGGATTGATAT 1251
||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1195 AAGAAACATTATGGTCCCCATGTTTTTGTGCAAATGGATTGATAT 1239
> Ahg348033 jgi|Araly1|348033|fgenesh1_pg.C_scaffold_5001425
Length=1026
Score = 761 bits (412), Expect = 0.0
Identities = 842/1044 (81%), Gaps = 52/1044 (5%)
Strand=Plus/Plus
Query 114 TTCATTCTAACTAtttttttAAGTTACAGAACTTC-GCTAGCTACATCTCGTGGTAGCCT 172
||| ||||| | ||| |||| |||| ||||||||| | ||| ||||||||||| | ||
Sbjct 20 TTC-TTCTAGCCATTATTTTGAGTTCCAGAACTTCAG-GAGCCACATCTCGTGGGGGGCT 77
Query 173 TTTTGAAGCTTCTGCCATTGAGAAACATGAGCAATGGATGGCTCGATTCAATCGCGTTTA 232
|||||||||||||| ||||| |||||||||||||||||| |||||||| ||||||||||
Sbjct 78 CTTTGAAGCTTCTGCTATTGAAAAACATGAGCAATGGATGTCTCGATTCCATCGCGTTTA 137
Query 233 CTCTGACGAAACCGAGAAAA-GAAATCGGTTTAATATCTTCAAGAAGAATTTGGAGTTCG 291
||| ||||| | ||||||| | | | ||||| | ||||| |||||||| || ||||||
Sbjct 138 CTCAGACGATTCTGAGAAAACG-AGTAGGTTTGAGATCTTTAAGAAGAACTTAAAGTTCG 196
Query 292 TCCAGAACTTCAACATGAATAATAA-AATCACGTACAAGGTT-GATATCAACGAGTTCTC 349
|| ||| |||||||||||||| || || |||||| | ||| ||| | |||||||||||
Sbjct 197 TCGAGAGCTTCAACATGAATACGAACAA-AACGTAC-ACGTTGGATGTTAACGAGTTCTC 254
Query 350 TGATCTTACGGACGAAGAATTTCGGGCGACACACACTGGACTAGTTGTGCCCG-AGGCTA 408
|||||| || ||||| |||||| ||||| |||| || || || ||||||| ||| ||
Sbjct 255 TGATCTAACCGACGAGGAATTTAAGGCGAGGTACACGGGGCTGGTGGTGCCCGAAGG-TA 313
Query 409 TAACCAGAATTTCAAC-TCTGTCTTCGGGCAAAAACACGGTGCCGTTTAGATATGGTAAT 467
| |||||||| ||||| | | ||| || || ||||| |||||||||||| |||
Sbjct 314 TGACCAGAATGTCAACAAC-GGATTC--TCATGAA-ACGGTATCGTTTAGATATGAAAAT 369
Query 468 GTTAGTGATAA-TGGCGAGAGCATGGATTGGAGACAAGAGGGGGCTGTTACACCCGTTAA 526
||| |||| || || |||||||||||||||||| | || |||||||||||| |||||||
Sbjct 370 GTTGGTGA-AACCGGTGAGAGCATGGATTGGAGAGAGGAAGGGGCTGTTACATCCGTTAA 428
Query 527 GTATCAAGGCCGATGTGGAGGATGCTGGGCGTTTTCCGCGGTGGCGGCAGTGGAAGGCAT 586
| | ||| | |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 429 GCACCAACAACAATGTGGAGGATGTTGGGCGTTTTCCGCGGTGGCGGCAGTGGAAGGCAT 488
Query 587 TACAAAGATTACTAAAGGCGAGCTTGTATCGCTATCGGAGCAACAACTCTTAGACTGC-G 645
|||||||||| ||||||||||||| || ||||| || ||||| ||||| || || || |
Sbjct 489 TACAAAGATTGCTAAAGGCGAGCTCGTGTCGCTGTCTGAGCAGCAACTGTTGGATTGTAG 548
Query 646 -ACAGAGACTACAATCAAGGATGTCGT-GGAGGGATAATGTCGAAAGCTTTCGAGTACAT 703
|| || | || || |||||| | ||||||||||||| |||||||||||| |||||
Sbjct 549 TACGGAAA--ACGAT---GGATGT-GACGGAGGGATAATGTGGAAAGCTTTCGACTACAT 602
Query 704 AATCA-AAAACCAAGGCATCACTACTGAGGATAACTATCCATACCAAGAATCACAACAAA 762
| | |||||||||| ||||| | |||||||| ||||| ||||||| | |||||||||
Sbjct 603 TGT-AGAAAACCAAGGAATCACCGCAGAGGATAATTATCCCTACCAAGGAGCACAACAAA 661
Query 763 CTTGT-AGTTCATCAACTACCCTATCATCGTCTTTTCGTGC-AGCCACAATCAGCGGATA 820
| ||| ||| || || | | | | | | || | ||| | ||| ||||||||||
Sbjct 662 CCTGTGAGT-CA--AA-T-CA-TGT-A--G-CTG--C-TGCTA-CCA---TCAGCGGATA 704
Query 821 TGAGACCGTTCC--AATGAATAATGAGGAAGCGTTGCTACAAGCAGTGTCTCAACAGCCT 878
|| || ||||| || ||| | |||||||| |||||| |||| |||||||||||||||
Sbjct 705 CGAAACGGTTCCCCAA--AATGACGAGGAAGCATTGCTAAAAGCGGTGTCTCAACAGCCT 762
Query 879 GTTTCTGTGGGGATAGAAGGGACAGGGGCCGCGTTTAGGCACTACTCGGGAGGGGTATTC 938
||||| |||| |||||||||| |||| | ||||| |||||||| || ||| ||||
Sbjct 763 GTTTCCGTGGCGATAGAAGGGTCAGGATATGAGTTTATACACTACTCAGGCGGGATATTT 822
Query 939 AACGGAGAATGTGGGACGGATTTGCATCATGCGGTTACAATTGTTGGTTATGGAATGAGT 998
|||||||| ||||||||| ||||| ||||||||||||| |||||||||||||| ||||
Sbjct 823 AACGGAGAGTGTGGGACGCATTTGAATCATGCGGTTACGATTGTTGGTTATGGGGTGAGC 882
Query 999 GAAGAAGGGACTAAGTATTGGGTGGTGAAGAATTCTTGGGGGGAAACTTGGGGAGAAAAT 1058
|||||||||| |||||||||| || ||||||| || ||||| ||| ||||||||||| ||
Sbjct 883 GAAGAAGGGATTAAGTATTGGTTGTTGAAGAACTCGTGGGGAGAATCTTGGGGAGAAGAT 942
Query 1059 GGTTACATGAGGATCAAGAGAGACGTGGATGCACCCCAAGGAATGTGTGGTTTGGCCATT 1118
||||| ||||| |||| ||||||||| |||||||| ||||||||||||||||||||||
Sbjct 943 GGTTATATGAGAATCATGAGAGACGTAGATGCACCTCAAGGAATGTGTGGTTTGGCCAGC 1002
Query 1119 CTTGCTTTCTATCCACTTGCTTGA 1142
||||||| ||||||| | ||||||
Sbjct 1003 CTTGCTTACTATCCAGTAGCTTGA 1026
> Ahg473117 jgi|Araly1|473117|fgenesh2_kg.1__3071__AT1G29110.1
Length=969
Score = 75.0 bits (40), Expect = 1e-12
Identities = 58/66 (88%), Gaps = 4/66 (6%)
Strand=Plus/Plus
Query 1046 TTGGGGAGAAAATGGTTACATGAGGATCAAG-AGAGACGTGGA-TGCACCCCAAGGAATG 1103
|||||||||||||||||||||||||||| | ||||| ||||| || || |||||||||
Sbjct 873 TTGGGGAGAAAATGGTTACATGAGGATCC-GTAGAGATGTGGAGTGG-CCTCAAGGAATG 930
Query 1104 TGTGGT 1109
||||||
Sbjct 931 TGTGGT 936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48949825428
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5