BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27430.1
Length=1445
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481642 jgi|Araly1|481642|fgenesh2_kg.4__702__AT2G27430.1 2111 0.0
> Ahg481642 jgi|Araly1|481642|fgenesh2_kg.4__702__AT2G27430.1
Length=1398
Score = 2111 bits (1143), Expect = 0.0
Identities = 1316/1400 (94%), Gaps = 10/1400 (1%)
Strand=Plus/Plus
Query 1 GTCCACTAAAAGAAACAGAACATCAAATCATCTATCCATTATGTCTTCCTCTCGAACACA 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 GTCCACTAAAAGAAACAGAACATCACATCATCTATCCATTATGTCTTCCTCTCGAACACA 60
Query 61 A---TC--C-TCTTCTTCTTCAGTTTGGCAACTTCAATACATGAAGCTCAACTTCTTCAC 114
| || | ||||||||||||||||||||||| ||||||||||||||| |||| |||||
Sbjct 61 ACCCTCTTCGTCTTCTTCTTCAGTTTGGCAACTCCAATACATGAAGCTCCACTTTTTCAC 120
Query 115 AAAGATTCGATGCCTTTTGAAATCCAAAGCATCCTT-CCGCAAAAGTAATCTTCAAGCGT 173
||||||||| |||||||||||||||||||||| ||| ||||||| | ||||||||||| |
Sbjct 121 AAAGATTCGTTGCCTTTTGAAATCCAAAGCAT-CTTCCCGCAAACGAAATCTTCAAGCCT 179
Query 174 TACCAGAGAAATCAAGAACCTATCAAGATTTCGAGAAGGTGGCGGCGCTTCCGGAAGAAA 233
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||
Sbjct 180 TACCAGAGAAATCAAGAACCTATCAAGATTCCGAGAAAGTGGCGGCGCTTCCGGAAGCAA 239
Query 234 TTGTATC-AAAGCCACCAGAAGATGAGAATGAGGAGGTTGTGTTACAAAAAACTGTAAAG 292
| ||| | ||||| ||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 240 TAGTA-CTAAAGCTACCAGAAGATGAGAATGAGGAGGTTGTGTTACAGAAAACTGTGAAG 298
Query 293 AAGATCCACTTCGGAAGCTGGGAAGAGAAGGAGAAAGCTGCCATAGAGATCGAGAAACTT 352
||| | ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 299 AAGCTTCACTTTGGAAGCTGGGAAGAGAAGGAAAAAGCTGCCATCGAGATCGAGAAACTT 358
Query 353 GCCCGAGAAGATAAGAAGACTCGGAAGCTCATGGCTGAGCTAGGTGTTATTCAAATTCTT 412
||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||
Sbjct 359 GCCCGAGAAGATAAGAAGACTCGGAAGCTCATGGCTGAGCTCGGTGTTCTTCAAGTTCTT 418
Query 413 GTTTCTATGGTCGCTTCCGATGTTTCCGGCCATCAGAAAGCTGCCGTCAATGCTCTTATT 472
|||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 419 GTTTATATGGTCGCTTCCGATGTTTCCGGCCATCAGAAAGCTGCTGTCAATGCGCTTATT 478
Query 473 CAGCTTTCTCATGGAACCTACACGAACAAGGCGCTGATGGTGAACGCCGATATATGCTCA 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CAGCTTTCTCATGGAACCTACACGAACAAGGCGCTGATGGTGAACGCCGATATATGCTCA 538
Query 533 AAGCTTCCCAAAAATGTTGAAGTTCTCGACCAATCAACAAGACATGCCTTTGCCGAGCTT 592
||||| ||||||||||| |||||||||||||||||||||||||||| |||||| ||||||
Sbjct 539 AAGCTACCCAAAAATGTCGAAGTTCTCGACCAATCAACAAGACATGGCTTTGCGGAGCTT 598
Query 593 CTGCTTTCATTGTCATCTCTAACCAACACACAATTACCAGTAGCTTCATCACAAATTCTA 652
||||||||| |||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 599 CTGCTTTCACTGTCTTCTCTAACAAACACACAATTACCAGTAGCTTCATCACAGATTCTA 658
Query 653 CCGTTCTTAATGGACACGATGAATTCAGATTCAACAGATATGAAGACCAAAGAGATATGT 712
||||||||||||||||| ||||| |||||||||||||| ||||| | |||||||| |||
Sbjct 659 CCGTTCTTAATGGACACAATGAACTCAGATTCAACAGACATGAAAATAAAAGAGATTTGT 718
Query 713 CTAGCCACCATAAGCAATCTCTGCCTTGTGTTGGAAAACGCAGGACCTTTGGTCTTGAAC 772
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 719 CTAGCCACCATAAGCAATCTCTGCCTCGTGTTGGAAAACGCAGGACCATTGGTCTTGAAC 778
Query 773 GGGGCAGTGGAGACACTCCTAAGCCTAATGTCAACTAAAGACTTGTCTGAGAAGGCACTA 832
||||||||| | ||||||||||| ||||||||| ||||||||||||| ||||||||||||
Sbjct 779 GGGGCAGTGCAAACACTCCTAAGGCTAATGTCAGCTAAAGACTTGTCCGAGAAGGCACTA 838
Query 833 GCGAGTCTAGGGAAATTGGTGGTGACTCAAATGGGTAAAAAAGCAATGGAGGATTGTTTG 892
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 839 GCGAGTCTAGGGCAATTGGTGGTAACTCAAATGGGTAAAAAAGCAATGGAGGATTGTTTG 898
Query 893 CTTGTGTCTAAAGGTTTAATAGAGATTCTAACATGGGAAGATATACCGAAATGCCAAGAA 952
||||| | |||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 899 ATTGTGCCCAAAGGTTTGATAGAGATTCTAACATGGGAAGATAAACCGAAATGCCAAGAA 958
Query 953 TACGCGGCGTATATCTTGATGGTATTAGCTCATCAGAGTTGGAGCCAGCGTGAGAAAATG 1012
||| | | |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 959 TACTCAGTGTATATCTTGATGGTATTAGCTCATCAGAGTTGGAGCCAGCGCGAGAAAATG 1018
Query 1013 GCCAAGGCAGGGATTGTGCCGGTTCTTCTTGAAGTGAGCTTACTTGGGAGTCCTCTGGTT 1072
|| |||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1019 GCTAAGGTAGGGATTGTGCCGGTCCTTCTTGAAGTGAGCTTACTTGGGAGCCCTCTGGTT 1078
Query 1073 CAAAAGAGGGCAGTGAAACTTTTGCAATGGTTCAAGGATGAGAGAAATGTACGGATGGGT 1132
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1079 CAAAAGAGGGCAGTGAAACTATTGCAGTGGTTCAAGGATGAGAGAAATGTACGGATGGGT 1138
Query 1133 CCTCATTCGGGTCCACAAACGGGTTGGGTGAGTCCTGGGATGGGATCTCCAATGAGCCCG 1192
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1139 CCTCATTCGGGTCCACAAACGGGTTGGATGAGTCCTGGGATGGGATCTCCAATGAGCCCG 1198
Query 1193 AGGTCAGGGGAAGAAGGTAGGAAGATGATGAAGAATCTGGTGAAACAGAGTTTATACAAG 1252
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1199 AGGTCAGGGGAAGAAGGTAGGAAGATGATGAAGAATCTAGTGAAACAGAGTTTGTACAAG 1258
Query 1253 AACATGGAGATGATAACTCGACGAGGGAATTTGGATATGGAGAGTGAAAGTTGTAGGCTT 1312
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1259 AACATGGAGATGATAACTCGACGAGGGAATGTGGATATGGAGAGTGAAAGTTGTAGGCTT 1318
Query 1313 AAGTCTTTGATCATCAGCACAAGCTCTAAAAGTTTGACTTATTGATCTTTGTTTTGTGTT 1372
|||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||
Sbjct 1319 AAGTCTTTGATCATCAGCACTAGCTCCAAAAGCTTGACTTATTGATCTTTATTTTGTGTT 1378
Query 1373 ATGACATTGCCATATAAAGT 1392
|||||||||||||||||||
Sbjct 1379 CTGACATTGCCATATAAAGT 1398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54050057655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5