BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27440.1
Length=1124
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344504 jgi|Araly1|344504|fgenesh1_pg.C_scaffold_4000846 815 0.0
Ahg470895 jgi|Araly1|470895|fgenesh2_kg.1__849__AT1G08340.1 451 4e-126
> Ahg344504 jgi|Araly1|344504|fgenesh1_pg.C_scaffold_4000846
Length=951
Score = 815 bits (441), Expect = 0.0
Identities = 479/498 (96%), Gaps = 0/498 (0%)
Strand=Plus/Plus
Query 232 ATGGCGGAGGAAAACGAACGGCATGCCATGGACATTAGTCGCCCAACCAATATCTCTCAT 291
|||||||||||||||||||| || |||||||||||| |||||||||||||||||| |||
Sbjct 1 ATGGCGGAGGAAAACGAACGACAAGCCATGGACATTGGTCGCCCAACCAATATCTGTCAC 60
Query 292 GTGGCTCATGTAACATACGATCGCTTCGATGGTTTTCTTGGTCTTCCTTCTGAATTCGAG 351
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GTGGCTCATGTAACATACGATCGCTTCGATGGTTTTCTTGGTCTTCCTTCTGAATTTGAG 120
Query 352 CCTGACGTACCCAAGAAGCCCCCTAGTGCAAGTGCAACAGTGTTTGGGGTTTCTACAGAG 411
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCGACGTACCCAAGAAGCCCCCTAGTGCAAGTGCAACAGTGTTTGGGGTTTCTACAGAG 180
Query 412 TCAATGCAGTTATCATACGACTCGAGAGGGAATTGTGTTCCTACCATACTCACGCTATTA 471
|| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 181 TCGATGCAGTTATCATACGACTCGAGAGGGAATTGTGTTCCGACGATACTCACGCTATTA 240
Query 472 CAAAGCCGGCTATACGATCAAGGAGGTTTGCAGGTAGAAGGAATTTTCAGAATCACAGGG 531
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAAAGCCGACTATACGATCAAGGAGGTTTGCAGGTAGAAGGAATTTTCAGAATCACAGGG 300
Query 532 GATAACAGTGAGGAGGAGTTTATTAGAGAAGAGTTAAACAAAGGAGTCCTACCAGAAGGC 591
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GATAACAGTGAGGAAGAGTTTATTAGAGAAGAGTTAAACAAAGGAGTCCTACCAGAAGGC 360
Query 592 ATCGATATCCACTGTCTCGCCGGACTTATAAAGGCATGGTTCAGAGAGTTACCGAAAGGG 651
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||
Sbjct 361 ATTGATATCCACTGTCTCGCCGGACTTATAAAGGCTTGGTTCAGAGAATTACCGAGAGGG 420
Query 652 GTACTCGATTCTCTACCATCTCAACAAGTGATGCAGTGTGAGTCAGGGGAGGATTTTGTG 711
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||
Sbjct 421 GTACTCGATTCTCTACCATCTCAACAAGTGATGCAGTGCGAGTCAGAGGAGGATTTCGTG 480
Query 712 AAGGTTGTGAGACTCTTG 729
||||||||||||||||||
Sbjct 481 AAGGTTGTGAGACTCTTG 498
Score = 472 bits (255), Expect = 3e-132
Identities = 359/407 (88%), Gaps = 15/407 (4%)
Strand=Plus/Plus
Query 727 TTGTAGAGTTTGAAGTTGTCAACAAGATGACCTCCCGTAATCTAGCTTTAGTCTTTGCAC 786
||||||||||||||| |||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 551 TTGTAGAGTTTGAAGATGTCAATAAGATGACCTCCCGTAATCTTGCTTTAGTCTTCGCAC 610
Query 787 CCAACATGTCCCAGATGGCAGATCCTTTAACAGCATTAATGTATGCAGTGCAAGTGATGA 846
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 611 CCAACATGTCTCAGATGGCAGATCCTTTAACAGCATTAATGTATGCGGTGCAAGTGATGA 670
Query 847 ACTTGCTGAGGAACCTCACAGACAAAACACTCAGAGAAAGGAAAATTGCGACTTCAAATG 906
|||||||||||||||||||||||||||| ||||| || |||||| ||||| | ||| |||
Sbjct 671 ACTTGCTGAGGAACCTCACAGACAAAACGCTCAGGGAGAGGAAAGTTGCGTCATCACATG 730
Query 907 T-AGATCCTTGTGATAACAGAAGTGAAGCTGAAGATGGTAATGTCgaagaatataatcaa 965
| | |||||| |||| ||||||||||||||||||||| | |||||| |||||||||||||
Sbjct 731 TCA-ATCCTTCTGATGACAGAAGTGAAGCTGAAGATGATGATGTCGGAGAATATAATCAA 789
Query 966 gaagtagaaatatatgttcttgaagaagtagaggaagaagaaggagaagaTGTTGAT--G 1023
|||| |||||| |||||||||||||||| | |||| ||||| | || ||| | || |
Sbjct 790 GAAGAAGAAATGTATGTTCTTGAAGAAG-A-AGGA-GAAGATGTTGATGATCTGGACAAG 846
Query 1024 -AT--CTG-GACAA-CGAAGAATCCGAGAGAATAACACTGCTTGCTGATGAACACAAACC 1078
| | | || || ||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 847 GAAGAC-GAGATAATCGAAGAATCCGGGAGAATAACACTGCTTGCTGACGAACACAAACC 905
Query 1079 ATCAAGCGCAGTGAATGCTAATGATCGAAAGAAACAAG-AAACATGA 1124
||||||| |||||||||||||||||| ||||||| ||| ||||||||
Sbjct 906 ATCAAGCACAGTGAATGCTAATGATCAAAAGAAA-AAGGAAACATGA 951
> Ahg470895 jgi|Araly1|470895|fgenesh2_kg.1__849__AT1G08340.1
Length=1351
Score = 451 bits (244), Expect = 4e-126
Identities = 498/619 (80%), Gaps = 24/619 (4%)
Strand=Plus/Plus
Query 122 AGATAGCGCGAGTGAG-AAGACGCGGAAAGCCCGAACTCTCGCGGTTCGGCAGCTC--CG 178
|||||| | || | || ||| ||||| ||| ||||||| | |||||||||| |||| ||
Sbjct 52 AGATAGAGAGACTTAGAAAG-CGCGGTAAGACCGAACTTTGGCGGTTCGGCGGCTCTACG 110
Query 179 -CGTCAGTTGGTCGAATCGTCTTCGAGCTATCTCGTTGCTTT-TCGAGAGATATAATGGC 236
|||| |||| |||| ||||| | ||||| | ||||| ||| |||| | | ||
Sbjct 111 TCGTCTGTTGCTCGAGTCGTCCTGGAGCTCGCCCGTTG-TTTCTCGA-CG-GCGGA-GGT 166
Query 237 GGAGGAAAACGAACG-GCATGCCATGGACATTAGTCGCCCAACCAATAT-CTCTCATGTG 294
||| |||||||| || || |||||||| ||| | | || |||||||| | | || |||
Sbjct 167 GGAAGAAAACGACCGTCCA-GCCATGGATATTGGAGGTCCTACCAATATCCGC-CACGTG 224
Query 295 GCTCATGTAACATACGATCGCTTCGATGGTTTTCTTGGTCTTCCTTCTGAATTCGAGCCT 354
||||| || || | |||||| ||| |||| || || |||||||| ||||| |||||||||
Sbjct 225 GCTCACGTTACCTTCGATCGTTTCAATGGCTTCCTCGGTCTTCCCTCTGAGTTCGAGCCT 284
Query 355 GACGTACCC-A-AGAAGCCCCCTAGTGCAAGTGCAACAGTGTTTGGGGTTTCTACAGAGT 412
|| || ||| | | |||| ||| |||||||||||||| ||||||||||| || |||||||
Sbjct 285 GATGT-CCCTACAAAAGCTCCC-AGTGCAAGTGCAACGGTGTTTGGGGTATCGACAGAGT 342
Query 413 CAATGCAGTTATCATACGACTCGAGAGGGAATTGTGTTCCTACCATACTCACGCTATTAC 472
||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
Sbjct 343 CAATGCAGTTATCATACGACTCGAGAGGGAATTGTGTTCCTGTGATACTGTTGCTATTGC 402
Query 473 AAAGCCGGCTATACGATCAAGGAGGTTTGCAGGTAGAAGGAATTTTCAGAATCACAGGGG 532
| |||||||| || ||||||||||| ||||||| ||||||| | ||||||||||| || |
Sbjct 403 AGAGCCGGCTTTATGATCAAGGAGGCTTGCAGGCAGAAGGAGTATTCAGAATCACTGGAG 462
Query 533 ATAACAGTGAGGAGGAGTTTATTAGAGAAG-AG-TTAAACAAAGG-AGTCCTACCAGAAG 589
| ||||| ||||| |||||| |||| || | || |||| ||||| | || ||||||| |
Sbjct 463 AGAACAGCGAGGAAGAGTTTGTTAGGGA-GCAGCTTAAT-AAAGGGA-TCATACCAGATG 519
Query 590 GCATCGATATCCACTGTCTCGCCGGACTTATAAAGGCATGGTTCAGAGAGTTACCGAAAG 649
| || ||| |||| ||| | ||||||||||| ||||| |||||||||||| | |||| ||
Sbjct 520 GAATTGATGTCCATTGTTTAGCCGGACTTATTAAGGCTTGGTTCAGAGAGCTGCCGAGAG 579
Query 650 GGGTACTCGATTCTCTACCATCTCAACAAGTGATGCAGTGTGAGTCAGGGGAGGATTTTG 709
| || || ||| |||| ||||| | |||||||||||||||||||||| ||||||||||
Sbjct 580 GTGTTCTTGATCCTCTGCCATCGGAGCAAGTGATGCAGTGTGAGTCAGATGAGGATTTTG 639
Query 710 TGAAGGTTGTGAGACTCTT 728
| |||||||||||||||||
Sbjct 640 TTAAGGTTGTGAGACTCTT 658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41897085783
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5