BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27450.2
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481644 jgi|Araly1|481644|fgenesh2_kg.4__704__AT2G27450.2 1744 0.0
> Ahg481644 jgi|Araly1|481644|fgenesh2_kg.4__704__AT2G27450.2
Length=1190
Score = 1744 bits (944), Expect = 0.0
Identities = 1102/1176 (94%), Gaps = 20/1176 (2%)
Strand=Plus/Plus
Query 1 ACAGAGAAAGAGAGAGAAACAATGGAAACGGAAGGAAGAAGACGAGAAGTGGTTGTTTCA 60
|||||||||||||| ||||| ||||||| | ||||||||||||||||||| ||||| |||
Sbjct 1 ACAGAGAAAGAGAGGGAAACCATGGAAATGCAAGGAAGAAGACGAGAAGTAGTTGTGTCA 60
Query 61 TCTCTCCAATTCGCTTGCTCCGACGATATCTCCACCAATGTCGCCGCCGCTGAGCGGTTC 120
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TCTCTTCAATTCGCTTGCTCCGACGATATCTCCACCAATGTCGCCGCCGCTGAGCGATTA 120
Query 121 Gtctctctctcttcctccctccctctctctaattatcaatctctcccatcttcctcctcc 180
| |||| | || |||||||||||| | |||||||||||| ||||||||||||||
Sbjct 121 G------TCTC-T-CT--CTCCCTCTCTCTGACTATCAATCTCTCTCATCTTCCTCCTCC 170
Query 181 tTCAAATTTCCATATGCATTAGTCAGAGAAGCTCACGCTAAAGGAGCTAATATCATTCTT 240
|| ||||| | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 TTGTAATTTTC--ATGTATTAGTCAGAGAAGCTCACGCTAAAGGAGCTAATATCATTCTC 228
Query 241 ATTCAGGAACTTTTTGAAGGATATTACTTCTGTCAAGCACAAAGAGAAGACTTCTTTAAG 300
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 229 ATTCAGGAACTTTTTGAAGGATATTACTTCTGTCAAGCGCAAAGAGAGGATTTCTTTAAG 288
Query 301 CGAGCCAAGCCTTACAAGAACCATCCTACCATTGCAAGGATGCAGAAGCTGGCAAAGGAA 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 289 CGAGCCAAGCCTTACAAGAACCATCCTACAATTGCAAGGATGCAGAAGCTGGCAAAGGAA 348
Query 361 TTGGGTGTAGTGATACCTGTTAGTTTCTTTGAGGAGGCAAATACTGCACATTACAATTCG 420
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 349 TTGGGTGTAGTGATACCTGTTAGCTTCTTTGAGGAGGCAAATGCTGCACATTACAATTCG 408
Query 421 ATTGCTATAATTGATGCTGATGGAACTGA-CTTGGGAATTTATAGGAAGTCTCATATTCC 479
|| || ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 409 ATAGCCATAATTGATGCTGATGGAACTGACCTT-GGAATTTATAGGAAGTCTCATATTCC 467
Query 480 TGATGGACCTGGTTATCAAGAGAAGTTTTATTTCAATCCTGGAGATACTGGCTTTAAGGT 539
||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 468 TGATGGACCAGGGTATCAAGAGAAGTTTTATTTCAATCCTGGAGACACTGGCTTTAAGGT 527
Query 540 TTTCCAGACGAAGTTTGCTAAAATTGGAGTGGCTATATGTTGGGATCAGTGGTTTCCTGA 599
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 528 TTTCCAGACAAAGTTTGCAAAAATTGGAGTGGCTATATGTTGGGATCAGTGGTTTCCTGA 587
Query 600 GGCAGCTCGAGCTATGGTTCTACAGGGTGCTGAAATACTGTTTTATCCCACTGCTATTGG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 GGCAGCTCGAGCTATGGTTCTACAGGGTGCTGAAATACTGTTTTATCCCACTGCTATTGG 647
Query 660 TTCTGAACCTCAAGACCAGGGATTGGATTCGCGTGATCATTGGAGGAGAGTTATGCAAGG 719
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 648 TTCTGAACCTCAAGACCAGGGATTGGATTCACGTGATCATTGGAGGAGAGTTATGCAAGG 707
Query 720 GCATGCTGGAGCTAACGTGGTACCTCTAGTAGCCTCAAATCGCATAGGGAAGGAAATAAT 779
||||||||| ||||||||||| |||||||| || ||||||||||||||||||||| ||||
Sbjct 708 GCATGCTGGGGCTAACGTGGTGCCTCTAGTCGCTTCAAATCGCATAGGGAAGGAAGTAAT 767
Query 780 TGAAACTGAGCATGGACCTAGTCAGATCACTTTCTACGGAACTTCCTTCATTGCCGGACC 839
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 768 TGAAACTGAGCATGGACCAAGTCAAATCACTTTCTACGGAACTTCCTTCATTGCCGGGCC 827
Query 840 AACAGGTGAAATTGTGGCCGAGGCAGATGATAAATCGGAAGCTGTTCTTGTAGCACAGTT 899
|||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||
Sbjct 828 AACAGGTGAAATTGTGGCTGAGGCAGATGATAAATCGGAAGCCGTTCTCGTGGCACAGTT 887
Query 900 TGATCTTGATATGATCAAGTCGAAAAGGCAAAGCTGGGGAGTGTTCCGTGACCGTCGTCC 959
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 888 TGATCTTGAGATGATCAAGTCGAAAAGGCAAAGCTGGGGTGTGTTCCGTGACCGTCGTCC 947
Query 960 AGATTTGTACAAGGTGCTTCTTACTATGGATGGTAATCTCTAAATCTTTTGCTGTTGGAA 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 948 AGATTTGTACAAGGTGCTTCTTACTATGGATGGTAATCTCTAAATCTTTTGCTGTTTGAA 1007
Query 1020 GCTTTGATCTTTTGTTTAAGATCACACTGGGGAAATCCATT-AACAACAATTATTACTGG 1078
|||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 1008 GCTTTGATCTTTTGGTTAAGATCACACTGAGGAAATCCATTTAACAACAACTATTACTGG 1067
Query 1079 CTTAACCTTAAAGGGTAAGTAAGCCCAAAAATAAAAGACCAGAAAAAG-TTTAATACATC 1137
||||| ||||||||||||| ||||||||||||||||||||||| | |||||||||||
Sbjct 1068 CTTAATCTTAAAGGGTAAG----CCCAAAAATAAAAGACCAGAAAATGGTTTAATACATC 1123
Query 1138 TCAAAATTTGTTCTGGCACTTTCATCTTTCTAGGTT 1173
|||||||||| | |||| ||||||||||||||||||
Sbjct 1124 TCAAAATTTGCTGTGGCTCTTTCATCTTTCTAGGTT 1159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46166852487
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5