BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27470.1
Length=1079
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481647 jgi|Araly1|481647|fgenesh2_kg.4__707__AT2G27470.1 857 0.0
> Ahg481647 jgi|Araly1|481647|fgenesh2_kg.4__707__AT2G27470.1
Length=993
Score = 857 bits (464), Expect = 0.0
Identities = 636/715 (89%), Gaps = 27/715 (4%)
Strand=Plus/Plus
Query 19 gagagagaggagagaAGAATGGAGTCGGAGAAAGTGGTGGTGGACGAGCTGCCGCTAGCT 78
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 GAGAGAGAGAAGAGAAGAATGGAGTCGGAGAAAGTGGTGGTGGACGAGCTGCCGCTGGCT 60
Query 79 ATTGTGCGCCGGGTGGTGAAGAAGAAGCTGTCGGAGTGTTCGCCGGATTATGACGTCAGT 138
|| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCGTGCGCCGGGTGGTGAAGGATAAGCTGTCGGAGTGTTCGCCGGATTATGACGTCAGT 120
Query 139 ATTCACAAGGAAGCTTTGCTCGCATTCTCAGAGAGTGCGAGGATCTTCATCCACTACCTC 198
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTCACAAGGAAGCGTTGCTTGCATTCTCAGAGAGTGCGAGGATCTTCATCCACTACCTC 180
Query 199 TCCGCCACGGCAAATGATTTTTGTAAAGATGCAAGAAGACAAACTATGAAGGCTGATGAT 258
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCCTCCACGGCAAATGATTTTTGTAAAGATGCAAGAAGACAAACTATGAAGGCTGATGAT 240
Query 259 GTGTTTAAGGCATTAGAAGAAATGGATTTTTCAGAATTTTTGGAGCCGCTTAAATCTTCT 318
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 GTGTTTAAGGCATTAGAAGAAATGGATTTTTCAGAATTTTTGGAGCCGCTTAAAGCTTCT 300
Query 319 CTTGAAGATTTTAAGAAGAAGAAT-GCGGGGAAAAAGGCGGGTGCTGCAGCTGCTTCGTA 377
|||||||||||||||||||||| | ||||||||||| ||||||| || ||| ||||| |
Sbjct 301 CTTGAAGATTTTAAGAAGAAGA-TCGCGGGGAAAAAAGCGGGTGGTGGAGCAGCTTCAAA 359
Query 378 TCCTGCTGGTGGAGCTGCTTTGAAATCTTCAAGTGGAACTGCTTCGAAGCCCAAAGAGAC 437
||||||||||||||||||| |||||| | || ||| ||||||||||||||||||||
Sbjct 360 GCCTGCTGGTGGAGCTGCTTCAAAATCTGCTGGTTCAACAGCTTCGAAGCCCAAAGAGAC 419
Query 438 GAAGAAGAGGAAACAGGAAGAACCATCTACGCAAAAGGGTGCAAGGAAAAGCAAAATAGA 497
|||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct 420 GAAGAAGAGGAAACAGGAAGGGCCATCAACGCAAAAGGGTGCAAGGAAATGCAAAATAGA 479
Query 498 TGAGGAAACTAAGAGGAATGACGAGGAGACTGAGAATGACAACACggaagaagagaatgg 557
|||||||||||| | |||||| ||||||| ||||||||||||||| ||||||||||||||
Sbjct 480 TGAGGAAACTAACAAGAATGATGAGGAGAATGAGAATGACAACACAGAAGAAGAGAATGG 539
Query 558 aaacgatgaggaggatgagaatggaaacgatgaggaagatgagaatgacga-tgaaAATA 616
||||||||||||||||||||||| | |||||| || | | ||| || || || |||
Sbjct 540 AAACGATGAGGAGGATGAGAATG-A--CGATGAA-AATACG-GAA-GA-GAATGGGAAT- 591
Query 617 CAGAAGAGAATGGGAATGATGA-GGAGAACGACGATGAAA-AT-ACGGAAGAGAATGGGA 673
|| ||| | | || || || |||||| || | |||| | | ||||||||||||||
Sbjct 592 --GATGAGGA-G--AACGA-GAAGGAGAATGAGG--GAAACAGCATGGAAGAGAATGGGA 643
Query 674 ATGATGAG-GAGAACGAGAAGGAGGATGAGGAAAACAGCATGGAAGAGAATGGGA 727
|||| ||| ||| | ||| ||| ||||||| | ||||||||||| |||||||
Sbjct 644 ATGA-GAGCGAGGA-GAGTGGGA--ATGAGGACCATAGCATGGAAGAAAATGGGA 694
Score = 640 bits (346), Expect = 0.0
Identities = 456/505 (90%), Gaps = 23/505 (5%)
Strand=Plus/Plus
Query 586 gatgaggaag-atgagaatgacgatga-aAATACAGAAGAGAATGG-GA--ATGATGA-G 639
||||||| || ||||||||||| | | | | | |||||||||||| | |||| || |
Sbjct 499 GATGAGG-AGAATGAGAATGAC-A--ACACAGA-AGAAGAGAATGGAAACGATGAGGAGG 553
Query 640 --GAGAACGACGATGAAAATACGGAAGAGAATGGGAATGATGAGGAGAACGAGAAGGAGG 697
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 ATGAGAATGACGATGAAAATACGGAAGAGAATGGGAATGATGAGGAGAACGAGAAGGAGA 613
Query 698 ATGAGGAAAACAGCATGGAAGAGAATGGGAATGAGAGCGAAGAGAGCGGGAATGAGGACC 757
|||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 614 ATGAGGGAAACAGCATGGAAGAGAATGGGAATGAGAGCGAGGAGAGTGGGAATGAGGACC 673
Query 758 ATAGCATGGAAGAAAATGGGAGCGGGGTTGGTGAAGATAATGAGAACGAGGACGGGAGCG 817
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
Sbjct 674 ATAGCATGGAAGAAAATGGGAGTGGGGATGGTGAAGATAATGAGAACGAGGACGGGAGTG 733
Query 818 TAAGTGGAAGTGGTGAAGAGGTAGAGAGTGATGAAGAAGATGAATGAACTCAAGGTTATA 877
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 734 GAAGCGGAAGTGGTGAAGAGGTAGAGGGTGATGAAGAAGATGAATGAACTCAAGGTTATA 793
Query 878 TTTTT-GCTAAGAACATGTTTTCAGGTTTATGTTGGAGATTAGCTTGTAAGCTTGAAGCA 936
||||| |||||||||||||||||||||| | |||||| |||||||||||||||||||||
Sbjct 794 TTTTTTGCTAAGAACATGTTTTCAGGTTAACGTTGGA--TTAGCTTGTAAGCTTGAAGCA 851
Query 937 GTGGTTGTGGCCATGAGCATGTAATAGACT-A-A-CATATCT-TTTTGCTCTTTGGCTCT 992
||||||||||||| |||||||| ||||||| | | || || | |||||||||||||||||
Sbjct 852 GTGGTTGTGGCCACGAGCATGTCATAGACTCATATCAAAT-TGTTTTGCTCTTTGGCTCT 910
Query 993 AGTGTTACCAAATATGTAAGTCAAAGTTTAGAAAATGAAGTTTTGCAACAAAATTTTAGC 1052
||||||| || ||||||||||||||||||||||| |||| ||||||||||||||||| ||
Sbjct 911 AGTGTTAACAGATATGTAAGTCAAAGTTTAGAAA-TGAAATTTTGCAACAAAATTTTGGC 969
Query 1053 TTAATTATTCATTTTGATTAAGAGA 1077
||| ||||||||| ||||| |||||
Sbjct 970 TTA-TTATTCATTCTGATTTAGAGA 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40181554518
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5