BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G27470.1 Length=1079 Score E Sequences producing significant alignments: (Bits) Value Ahg481647 jgi|Araly1|481647|fgenesh2_kg.4__707__AT2G27470.1 857 0.0 > Ahg481647 jgi|Araly1|481647|fgenesh2_kg.4__707__AT2G27470.1 Length=993 Score = 857 bits (464), Expect = 0.0 Identities = 636/715 (89%), Gaps = 27/715 (4%) Strand=Plus/Plus Query 19 gagagagaggagagaAGAATGGAGTCGGAGAAAGTGGTGGTGGACGAGCTGCCGCTAGCT 78 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 GAGAGAGAGAAGAGAAGAATGGAGTCGGAGAAAGTGGTGGTGGACGAGCTGCCGCTGGCT 60 Query 79 ATTGTGCGCCGGGTGGTGAAGAAGAAGCTGTCGGAGTGTTCGCCGGATTATGACGTCAGT 138 || |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 61 ATCGTGCGCCGGGTGGTGAAGGATAAGCTGTCGGAGTGTTCGCCGGATTATGACGTCAGT 120 Query 139 ATTCACAAGGAAGCTTTGCTCGCATTCTCAGAGAGTGCGAGGATCTTCATCCACTACCTC 198 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 121 ATTCACAAGGAAGCGTTGCTTGCATTCTCAGAGAGTGCGAGGATCTTCATCCACTACCTC 180 Query 199 TCCGCCACGGCAAATGATTTTTGTAAAGATGCAAGAAGACAAACTATGAAGGCTGATGAT 258 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TCCTCCACGGCAAATGATTTTTGTAAAGATGCAAGAAGACAAACTATGAAGGCTGATGAT 240 Query 259 GTGTTTAAGGCATTAGAAGAAATGGATTTTTCAGAATTTTTGGAGCCGCTTAAATCTTCT 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 241 GTGTTTAAGGCATTAGAAGAAATGGATTTTTCAGAATTTTTGGAGCCGCTTAAAGCTTCT 300 Query 319 CTTGAAGATTTTAAGAAGAAGAAT-GCGGGGAAAAAGGCGGGTGCTGCAGCTGCTTCGTA 377 |||||||||||||||||||||| | ||||||||||| ||||||| || ||| ||||| | Sbjct 301 CTTGAAGATTTTAAGAAGAAGA-TCGCGGGGAAAAAAGCGGGTGGTGGAGCAGCTTCAAA 359 Query 378 TCCTGCTGGTGGAGCTGCTTTGAAATCTTCAAGTGGAACTGCTTCGAAGCCCAAAGAGAC 437 ||||||||||||||||||| |||||| | || ||| |||||||||||||||||||| Sbjct 360 GCCTGCTGGTGGAGCTGCTTCAAAATCTGCTGGTTCAACAGCTTCGAAGCCCAAAGAGAC 419 Query 438 GAAGAAGAGGAAACAGGAAGAACCATCTACGCAAAAGGGTGCAAGGAAAAGCAAAATAGA 497 |||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||| Sbjct 420 GAAGAAGAGGAAACAGGAAGGGCCATCAACGCAAAAGGGTGCAAGGAAATGCAAAATAGA 479 Query 498 TGAGGAAACTAAGAGGAATGACGAGGAGACTGAGAATGACAACACggaagaagagaatgg 557 |||||||||||| | |||||| ||||||| ||||||||||||||| |||||||||||||| Sbjct 480 TGAGGAAACTAACAAGAATGATGAGGAGAATGAGAATGACAACACAGAAGAAGAGAATGG 539 Query 558 aaacgatgaggaggatgagaatggaaacgatgaggaagatgagaatgacga-tgaaAATA 616 ||||||||||||||||||||||| | |||||| || | | ||| || || || ||| Sbjct 540 AAACGATGAGGAGGATGAGAATG-A--CGATGAA-AATACG-GAA-GA-GAATGGGAAT- 591 Query 617 CAGAAGAGAATGGGAATGATGA-GGAGAACGACGATGAAA-AT-ACGGAAGAGAATGGGA 673 || ||| | | || || || |||||| || | |||| | | |||||||||||||| Sbjct 592 --GATGAGGA-G--AACGA-GAAGGAGAATGAGG--GAAACAGCATGGAAGAGAATGGGA 643 Query 674 ATGATGAG-GAGAACGAGAAGGAGGATGAGGAAAACAGCATGGAAGAGAATGGGA 727 |||| ||| ||| | ||| ||| ||||||| | ||||||||||| ||||||| Sbjct 644 ATGA-GAGCGAGGA-GAGTGGGA--ATGAGGACCATAGCATGGAAGAAAATGGGA 694 Score = 640 bits (346), Expect = 0.0 Identities = 456/505 (90%), Gaps = 23/505 (5%) Strand=Plus/Plus Query 586 gatgaggaag-atgagaatgacgatga-aAATACAGAAGAGAATGG-GA--ATGATGA-G 639 ||||||| || ||||||||||| | | | | | |||||||||||| | |||| || | Sbjct 499 GATGAGG-AGAATGAGAATGAC-A--ACACAGA-AGAAGAGAATGGAAACGATGAGGAGG 553 Query 640 --GAGAACGACGATGAAAATACGGAAGAGAATGGGAATGATGAGGAGAACGAGAAGGAGG 697 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 554 ATGAGAATGACGATGAAAATACGGAAGAGAATGGGAATGATGAGGAGAACGAGAAGGAGA 613 Query 698 ATGAGGAAAACAGCATGGAAGAGAATGGGAATGAGAGCGAAGAGAGCGGGAATGAGGACC 757 |||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 614 ATGAGGGAAACAGCATGGAAGAGAATGGGAATGAGAGCGAGGAGAGTGGGAATGAGGACC 673 Query 758 ATAGCATGGAAGAAAATGGGAGCGGGGTTGGTGAAGATAATGAGAACGAGGACGGGAGCG 817 |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| | Sbjct 674 ATAGCATGGAAGAAAATGGGAGTGGGGATGGTGAAGATAATGAGAACGAGGACGGGAGTG 733 Query 818 TAAGTGGAAGTGGTGAAGAGGTAGAGAGTGATGAAGAAGATGAATGAACTCAAGGTTATA 877 ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 734 GAAGCGGAAGTGGTGAAGAGGTAGAGGGTGATGAAGAAGATGAATGAACTCAAGGTTATA 793 Query 878 TTTTT-GCTAAGAACATGTTTTCAGGTTTATGTTGGAGATTAGCTTGTAAGCTTGAAGCA 936 ||||| |||||||||||||||||||||| | |||||| ||||||||||||||||||||| Sbjct 794 TTTTTTGCTAAGAACATGTTTTCAGGTTAACGTTGGA--TTAGCTTGTAAGCTTGAAGCA 851 Query 937 GTGGTTGTGGCCATGAGCATGTAATAGACT-A-A-CATATCT-TTTTGCTCTTTGGCTCT 992 ||||||||||||| |||||||| ||||||| | | || || | ||||||||||||||||| Sbjct 852 GTGGTTGTGGCCACGAGCATGTCATAGACTCATATCAAAT-TGTTTTGCTCTTTGGCTCT 910 Query 993 AGTGTTACCAAATATGTAAGTCAAAGTTTAGAAAATGAAGTTTTGCAACAAAATTTTAGC 1052 ||||||| || ||||||||||||||||||||||| |||| ||||||||||||||||| || Sbjct 911 AGTGTTAACAGATATGTAAGTCAAAGTTTAGAAA-TGAAATTTTGCAACAAAATTTTGGC 969 Query 1053 TTAATTATTCATTTTGATTAAGAGA 1077 ||| ||||||||| ||||| ||||| Sbjct 970 TTA-TTATTCATTCTGATTTAGAGA 993 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40181554518 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5