BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27480.1
Length=944
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320539 jgi|Araly1|320539|fgenesh1_pm.C_scaffold_4000596 881 0.0
> Ahg320539 jgi|Araly1|320539|fgenesh1_pm.C_scaffold_4000596
Length=687
Score = 881 bits (477), Expect = 0.0
Identities = 618/688 (90%), Gaps = 2/688 (0%)
Strand=Plus/Plus
Query 92 ATGTCTTACTCAAACGCCTACGCACCGTCGGCACCGGAGCTACCAGAATCGTTCGTTCAG 151
||| ||| ||||||||||||||| ||||| ||||||||| | ||||||||||||| ||||
Sbjct 1 ATGGCTTCCTCAAACGCCTACGCGCCGTCAGCACCGGAGTTGCCAGAATCGTTCGGTCAG 60
Query 152 CAGCAGCACGATGGTGAAAGTAGATACACTTACGCGTATCCATCATATCAACCAACTCAG 211
|||||| |||| || |||| ||||||| ||||||||||||||||||||||| ||||||
Sbjct 61 CAGCAGTACGACGGCGAAAACAGATACAGTTACGCGTATCCATCATATCAACAAACTCAA 120
Query 212 CAATTCAGCTCTTACTCCGGGATGTTTTCCCCGGAAACGCATCCGGAGATTGTGAGGAGC 271
||||| | ||| | ||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 121 CAATTAACCTCCTCCTCCGGGATGTTTTCACCGGAAACGCATCCGCAGATTGTGAGGAGC 180
Query 272 TTTGAGTCGGCGGATAGAAACCGGAGCGGATTTCTCGAAGAATCGGAGCTCCGGCAAGCG 331
||||| |||||||||||| | |||||||||||||||||||| |||||||||| |||||||
Sbjct 181 TTTGACTCGGCGGATAGAGATCGGAGCGGATTTCTCGAAGAGTCGGAGCTCCAGCAAGCG 240
Query 332 TTGTCGTTATCTGGGTACGATGGAATTAGTAACAGAACGATTAGGTTGCTGTTGTTTATT 391
|||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 241 TTGTCGTTATCTGGTTACGAAGGAATTAGTAACAGAACGATTAGGTTTTTGTTGTTTATT 300
Query 392 TACAAGATTCCTGTAGATTCTCTGCTTCGGCTTGGTCCTAAGGAGTATGTTGAGTTATGG 451
||||||| ||||| |||||||||||| || |||||||| ||||||||||||||||| |||
Sbjct 301 TACAAGAGTCCTGGAGATTCTCTGCTACGTCTTGGTCCCAAGGAGTATGTTGAGTTGTGG 360
Query 452 AACTGCCTTGCGCAATGGCGTGCAATATTTAACAGGTACGATAGAGATAGGAGTGGAAAG 511
|| || |||||||||||||||||||||||| | ||||| |||||||||||||| ||||||
Sbjct 361 AATTGTCTTGCGCAATGGCGTGCAATATTTGATAGGTATGATAGAGATAGGAGCGGAAAG 420
Query 512 ATGAATTCTACCCAGCTCAGAGACGCTTTCTATAATCTCGGG-TGCGTGCTTCCAACCTC 570
|| ||| ||||| |||||||||||||||||| | |||| ||| | | |||||||||||||
Sbjct 421 ATCAATGCTACCGAGCTCAGAGACGCTTTCTTTCATCT-GGGATACATGCTTCCAACCTC 479
Query 571 GGTTCACCAGCTTATCGTATCTCAGTTTGATGATGGGACTGGCAAAACTGTTGACCTATG 630
||||| || |||||||||||||||||||||||||||||||| ||| |||||||||| ||
Sbjct 480 GGTTCTTCAACTTATCGTATCTCAGTTTGATGATGGGACTGGTAAAGCTGTTGACCTCTG 539
Query 631 TTTCGACAGCTTCCTCGAGTGTGGGATGATTGTGAAGGGATTGACAGAGAAGTTCAGGGA 690
|||||| || ||||| || |||||||||||||||||||||||||| |||||||||| ||
Sbjct 540 TTTCGATAGTTTCCTTGAATGTGGGATGATTGTGAAGGGATTGACTGAGAAGTTCAAAGA 599
Query 691 GAACGACCCTGGTTACACAGGCTACGCAACGCTCTCTTACGATGTCTTCATGTTGATGGT 750
||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 600 GAATGACCCTGGTTACACAGGCTACGCAACGCTCCCTTACGATGTTTTCATGTTGATGGT 659
Query 751 CATTCCGTTCATCGCCACCTATGATTAA 778
|||||||||| ||| | |||||||||||
Sbjct 660 CATTCCGTTCGTCGTCTCCTATGATTAA 687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35034960723
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5