BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27490.1
Length=1061
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481650 jgi|Araly1|481650|fgenesh2_kg.4__710__AT2G27490.2 1227 0.0
Ahg331076 jgi|Araly1|331076|fgenesh1_pm.C_scaffold_8000419 446 2e-124
> Ahg481650 jgi|Araly1|481650|fgenesh2_kg.4__710__AT2G27490.2
Length=769
Score = 1227 bits (664), Expect = 0.0
Identities = 738/773 (95%), Gaps = 8/773 (1%)
Strand=Plus/Plus
Query 248 AAAA-TATAAGTGTTCCTGAGGAGTAAAAGAGGGGAAAAA-GAGAATGAGAATAGTCGGG 305
|||| | |||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1 AAAATTTTAAGTGTTCCTGAGGAGTAAAAGA--GGAAAAAGGAGAATGAGAATAGTCGGG 58
Query 306 TTAACGGGAGGCATAGCGTCTGGGAAGAGTACAGTGTCTAACCTCTTCAAGGCTAGTGGC 365
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 59 TTAACGGGAGGCATAGCGTCTGGGAAGAGTACTGTCTCCAACCTCTTCAAGGCTAGTGGC 118
Query 366 ATTCCCGTTGTTGACGCTGATGTTGTTGCTCGAGATGTATTGAAGAAAGGAAGCGGTGGA 425
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 ATTCCCGTTGTTGACGCTGATGTTGTTGCTCGAGATGTATTGAAGAAAGGAAGCGGTGGT 178
Query 426 TGGAAAAGAGTCGTTGCAGCTTTTGGTGAGGAGATTCTGCTTCCTAGTGGAGAAGTGGAT 485
||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 179 TGGAAAAGAGTAGTTGCAGCTTTTGGGGAGGAGATTCTGCTTCCTAGTAGAGAAGTGGAT 238
Query 486 CGGCCAAAACTCGGTCAGATTGTGTTCTCGTCTGATTCCAAGCGTCAACTTCTAAACAAG 545
||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 239 CGGCCGAAACTCGGTCAGATTGTGTTTTCGTCTGATTCTAAGCGCCAACTTCTAAACAAA 298
Query 546 CTGATGGCTCCATACATATCAAGTGGTATCTTCTGGGAAATTCTGAAACAATGGGCGAGT 605
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 299 CTGATGGCTCCATACATATCAAGTGGTATCTTTTGGGAAATTCTGAAACAATGGGCGAGT 358
Query 606 GGAGCTAAAGTGATAGTTGTCGATATCCCTTTGTTGTTCGAAGTGAAGATGGATAAATGG 665
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GGAGCTAAAGTGATCGTTGTCGATATCCCTTTGTTGTTCGAAGTGAAGATGGATAAATGG 418
Query 666 ACTAAACCTATTGTGGTTGTGTGGGTTAGTCAAGAGACACAACTTAAGAGACT-GATGGA 724
||||||||||||||||||||||||||||||||||| ||||| ||||||||||| | ||||
Sbjct 419 ACTAAACCTATTGTGGTTGTGTGGGTTAGTCAAGAAACACAGCTTAAGAGACTAG-TGGA 477
Query 725 GAGAGATGGATTGAGTGAGGAAGATGCAAGAAACAGAGTGATGGCTCAGATGCCGTTGGA 784
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 478 GAGAGATGGACTGAGTGAGGAAGATGCAAGAAATAGAGTGATGGCTCAGATGCCGTTGGA 537
Query 785 TTCGAAAAGAAGCAAAGCTGATGTTGTGATCGATAATAATGGCTCTCTTGACGACCTTCA 844
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 538 TTCGAAAAGAAGCAAAGCTGATGTTGTGATCGATAATAATGGCTCTCTCGACGACCTTCA 597
Query 845 CCAACAGTTCGAGAAGGTTTTGAT-TGAAATTAGAAGACCATTGACGTGGATCGAGTTTT 903
|||||||||||| ||||||||| | ||||||||||| ||| |||||||||||||||||||
Sbjct 598 CCAACAGTTCGACAAGGTTTTG-TCTGAAATTAGAAAACCCTTGACGTGGATCGAGTTTT 656
Query 904 GGCGTTCAAGGCAAGGAGCCTTCTCGGTCCTTGGTTCAGTGATTTTAGGATTATCTGTTT 963
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 657 GGCGTTCAAGGCAAGGAGCCTTCTCGGTCATTGGTTCGGTGATTTTAGGATTATCTGTTT 716
Query 964 GCAAACAGCTCAAAATTGGCTCTTAACATTTCACTTCTGTTACTGCTAAAAAA 1016
||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 717 GCAAACAGCTCAAAATTGGCTCTTAACATTTCACTTCTGTTACTGTTAATAAA 769
> Ahg331076 jgi|Araly1|331076|fgenesh1_pm.C_scaffold_8000419
Length=696
Score = 446 bits (241), Expect = 2e-124
Identities = 263/274 (96%), Gaps = 0/274 (0%)
Strand=Plus/Plus
Query 716 ACTGATGGAGAGAGATGGATTGAGTGAGGAAGATGCAAGAAACAGAGTGATGGCTCAGAT 775
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 423 ACTGATGGAGAGAGATGGATTGAGTGAGGAAGATGCAAGAAATAGAGTGATGGCTCAGAT 482
Query 776 GCCGTTGGATTCGAAAAGAAGCAAAGCTGATGTTGTGATCGATAATAATGGCTCTCTTGA 835
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 483 GCTTTTGGATTCGAAAAGAAGCAAAGCTGATGTTGTGATCGATAATAATGGCTCTCTCGA 542
Query 836 CGACCTTCACCAACAGTTCGAGAAGGTTTTGATTGAAATTAGAAGACCATTGACGTGGAT 895
|||||| |||||||||||||| || |||||| |||||||||||| ||| |||||||||||
Sbjct 543 CGACCTCCACCAACAGTTCGACAATGTTTTGTTTGAAATTAGAAAACCCTTGACGTGGAT 602
Query 896 CGAGTTTTGGCGTTCAAGGCAAGGAGCCTTCTCGGTCCTTGGTTCAGTGATTTTAGGATT 955
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 603 CGAGTTTTGGCGTTCAAGGCAAGGAGCCTTCTCGGTCCTTGGTTCGGTGATTTTAGGATT 662
Query 956 ATCTGTTTGCAAACAGCTCAAAATTGGCTCTTAA 989
||||||||||||||||||||||||||||||||||
Sbjct 663 ATCTGTTTGCAAACAGCTCAAAATTGGCTCTTAA 696
Score = 390 bits (211), Expect = 9e-108
Identities = 237/250 (95%), Gaps = 0/250 (0%)
Strand=Plus/Plus
Query 291 ATGAGAATAGTCGGGTTAACGGGAGGCATAGCGTCTGGGAAGAGTACAGTGTCTAACCTC 350
||||||||||||||| |||||||||||||| ||||||||||||||||||| || ||||||
Sbjct 1 ATGAGAATAGTCGGGCTAACGGGAGGCATATCGTCTGGGAAGAGTACAGTCTCCAACCTC 60
Query 351 TTCAAGGCTAGTGGCATTCCCGTTGTTGACGCTGATGTTGTTGCTCGAGATGTATTGAAG 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCAAGGCTAGTGGCATTCCCGTTGTTGACGCTGATGTTGTTGCTCGAGATGTATTGAAG 120
Query 411 AAAGGAAGCGGTGGATGGAAAAGAGTCGTTGCAGCTTTTGGTGAGGAGATTCTGCTTCCT 470
||||||||| |||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 121 AAAGGAAGCAGTGGATGGAAAAGAGTAGTTGCAGCTTTCGGGGAGGAGATTCTGCTTCCT 180
Query 471 AGTGGAGAAGTGGATCGGCCAAAACTCGGTCAGATTGTGTTCTCGTCTGATTCCAAGCGT 530
||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 181 AGTAGAGAAGTGGATCGGCCGAAACTCGGTCAGATTGTGTTCTCATCTGATTCCAAACGC 240
Query 531 CAACTTCTAA 540
||||||||||
Sbjct 241 CAACTTCTAA 250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39495342012
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5