BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27500.1
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900464 jgi|Araly1|900464|Al_scaffold_0004_1114 1975 0.0
> Ahg900464 jgi|Araly1|900464|Al_scaffold_0004_1114
Length=1182
Score = 1975 bits (1069), Expect = 0.0
Identities = 1146/1183 (97%), Gaps = 5/1183 (0%)
Strand=Plus/Plus
Query 185 ATGGCCACACATAGtctctccttcttcttcagagttcttctcctcctctttcttactctc 244
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCCACACATAGTCTCTCCTTCTTCTTCAGAGTTCTTCTCCTCCTCTTCCTTACTCTC 60
Query 245 tcAGAGAGAATTAAAGGGCAAGGTGTGGGAATCAACTACGGCCAAATAGCAAACAACCTC 304
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 61 TCAGAGAGAATTAAAGGGCAAGGTGTGGGAATCAACTACGGCCAAATTGCTAACAACCTC 120
Query 305 CCATCTCCGGCAAGAGTCGCCGTGCTCCTTCGATCACTAAACATCACAAGAGTAAAACTC 364
||||||||||| ||||| ||||| || || ||||||||||||||||||||||||||||||
Sbjct 121 CCATCTCCGGCGAGAGTTGCCGTACTTCTCCGATCACTAAACATCACAAGAGTAAAACTC 180
Query 365 TACGACGCAGATCCAAACGTCCTCTTCTCCTTCTCAAACTCACAAGTAGATTTCATGATC 424
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 181 TACGACGCAGATCCAAACGTTCTCTTCTCCTTCTCAAACTCACAAGTCGATTTCATGATC 240
Query 425 GGTTTAGGCAACGAGTATCTTCAAAACATGTCAACAGATCCAACCAAAGCTCAAGATTGG 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGTTTAGGCAACGAGTATCTTCAAAACATGTCAACAGATCCAACCAAAGCTCAAGATTGG 300
Query 485 TTACAACAAAGACTTGAACCACATATCTCAAAAACACGAATAACCTCAATAGTTGTCGGC 544
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 301 TTACAACAAAGACTTGAACCACATATCTCAAAAACTCGAATAACCTCAATCGTTGTCGGT 360
Query 545 AACGAAATCTTCAAAACCAATGATCATGTCCTCATCCAAAGCCTATTACCGGCTATGAAA 604
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 361 AACGAAATCTTCAAAACCAATGATCATGTCCTCATCGAAAACCTATTACCGGCTATGAAA 420
Query 605 TCGGTTTACGCTGCTTTAACCAATCTTGGTTTAGAGAAACAAGTAACCGTAACTTCAGCT 664
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 421 TCGGTTTACGCTGCTTTAACCAATCTTGGTTTAGAGAAACAAGTAACGGTTACTTCAGCT 480
Query 665 CATTCTTTAGACATTCTTTCAACATCTTATCCTCCTTCTTCAGGATCATTCAAAGAAGAG 724
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 CATTCTTTAGACATTCTTTCAACTTCTTATCCTCCTTCTTCAGGATCATTCAAAGAAGAG 540
Query 725 TTTATTCAATATCTTCAACCACTTCTTGATTTTCATTCTCAAATCGAATCACCTTTCTTG 784
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 541 TTTATTCAATATCTTCAACCACTTCTTGATTTTCATTCTCAAATCAAATCACCTTTCTTG 600
Query 785 ATAAATGCTTATCCCTTT-TTTGCTTATAAAGATAGTCCTAAAGAAGTTCCATTAGAGTA 843
|| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATTAATGCTTAT-CCTTTCTTTGCTTATAAAGATAGTCCTAAAGAAGTTCCATTAGAGTA 659
Query 844 TGTTTTGTTTCAACCTAATCAAGGTATGGTTGATCCAAACACTAATCTTCATTATGACAA 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 660 TGTTTTGTTTCAACCTAATCAAGGTATGGTTGATCCAAACACTAATCTTCATTATGATAA 719
Query 904 CATGTTGTTTGCTCAAGTTGATGCGCTTTACTCTGCCATTAAGACTTTGGGACATACCGA 963
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 720 CATGTTGTTTGCTCAAGTTGATGCACTTTACTCTGCCATTAAAACTTTGGGACATACCGA 779
Query 964 TATCGAGGTTCGGATATCGGAAACCGGTTGGCCTTCTAAAGGAGATGAGAATGAGATTGG 1023
||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 780 TATCGAGGTTCGGATATCGGAAACCGGTTGGCCGTCGAAAGGAGATGAGAATGAGATCGG 839
Query 1024 AGCTTCGCCGGAGAACGCGGCTTTGTATAATGGGAATTTGTTGAAGTTGATTCAGCAGAG 1083
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 840 AGCTTCGCCGGAGAACGCGGCTTTGTATAATGGGAACTTGTTGAAGTTGATTCAGCAGAG 899
Query 1084 GAAAGGAACTCCGGCGAAGCAATCTGTTCCTATTGATGTTTATGTGTTTGCTCTGTTTAA 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GAAAGGAACTCCGGCGAAGCAATCTGTTCCTATTGATGTTTATGTGTTTGCTCTGTTTAA 959
Query 1144 TGAGAATCTTAAACCGGGTCCGGTTTCTGAGAGGAATTATGGACTTTTTTATCCGGATGG 1203
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 960 TGAGAATCTTAAACCGGGTCCGGTTTCTGAGAGGAATTATGGACTTTTTTACCCGGATGG 1019
Query 1204 TAAACCGGTTTACAATGTCGGTATGCAAGGTTATTTACCTGATATTATCTATACTTCAAG 1263
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1020 TAAACCGGTTTACAATGTCGGTATGCAGGGTTATTTACCTGATATTATCTACACTTCAAG 1079
Query 1264 GGCAACTACAATTAAGATTTTGAATTTGTGGAGAGTCGTGATGGGTTTGGCTGTGGCTTG 1323
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GGCAACTACAATCAAGATTTTGAATTTGTGGAGAGTCGTGATGGGTTTGGCTGTGGCTTG 1139
Query 1324 GTTCATACTC---GATATGGGCGACAAGATGAGGATGAGATAA 1363
||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1140 GTTTATACTCCTCGATATGGGCGACAAGATGAGGATGAGATAA 1182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58316165095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5