BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27505.1
Length=1077
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481654 jgi|Araly1|481654|fgenesh2_kg.4__714__AT2G27505.1 846 0.0
Ahg898522 jgi|Araly1|898522|Al_scaffold_0005_2488 161 8e-39
Ahg898505 jgi|Araly1|898505|Al_scaffold_0005_2471 161 8e-39
Ahg340564 jgi|Araly1|340564|fgenesh1_pg.C_scaffold_3000327 111 8e-24
> Ahg481654 jgi|Araly1|481654|fgenesh2_kg.4__714__AT2G27505.1
Length=993
Score = 846 bits (458), Expect = 0.0
Identities = 634/713 (89%), Gaps = 36/713 (5%)
Strand=Plus/Plus
Query 386 TAAAGCATGACGACTCCATGGACGACTGTAACAAAAGAGTCATGGAGTGGATAGCCGAAG 445
||||| ||||||| ||||| ||||| ||||||||||||||||||||||||||| ||||||
Sbjct 296 TAAAGAATGACGATTCCATCGACGATTGTAACAAAAGAGTCATGGAGTGGATAACCGAAG 355
Query 446 TAGTCCACGGCGGAGTTCAACATCTAGATGTTGATGCCAAAACGTGCGGGATAATTCAAT 505
|||||||| ||||||||||||||||||||||||| | | ||| ||||||||||||||
Sbjct 356 TAGTCCACCGCGGAGTTCAACATCTAGATGTTGA-GGC----CGT-CGGGATAATTCAAT 409
Query 506 CTCATCCAGATATATATAAGAGCACAATGTGTTCACCTTCTGTAGATTCCATGCCTAAGT 565
||||||||| || | ||| | || ||||| ||||||||||||||||| |||||||||||
Sbjct 410 CTCATCCAG-GAT-T-TAACAACATAATGTATTCACCTTCTGTAGATTTCATGCCTAAGT 466
Query 566 ATGTTTATGTGAGCAAGACAGTGGTGTCTTTAAAGCTCGTAAAGGTAGGGCATGAGGATC 625
|||||||||||||||||||| |||||||||||||||||||||| ||||||| ||| ||||
Sbjct 467 ATGTTTATGTGAGCAAGACATTGGTGTCTTTAAAGCTCGTAAACGTAGGGCTTGAAGATC 526
Query 626 CCAAGTTTGTTGTTTCTCTACCTAGTCTCAAGATGATGCATCTAGAAAACATTCT-TTAC 684
|||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||
Sbjct 527 CCAAGTTTGTTGTTTCTCTACCTAGTCTCAAGATCATGCATCTAGAAAACATT-TATTAC 585
Query 685 AAGAATCATGGTGTTCTTTTGATTATAAAGATGCTCCTCTCAGGCTCTCCTGTTCTTGAA 744
|||| |||||||| ||||||||| |||||||||||| |||||| ||||||||||||||||
Sbjct 586 AAGAGTCATGGTGGTCTTTTGATCATAAAGATGCTCATCTCAGCCTCTCCTGTTCTTGAA 645
Query 745 GTTCTTACCTTGGAGTTTTC-T-----GTTCCA-GTTCTAACAATGCCAAGGAGTAATTT 797
| |||||||||||||||||| | |||||| || | ||||||||||| |||||||||
Sbjct 646 GATCTTACCTTGGAGTTTTCGTTTTCTGTTCCAAGTCC-AACAATGCCAAAGAGTAATTT 704
Query 798 GGATTTAGTGCAAGACTATTTTTATT-CATGTAAGCCAGGGGAAATAGACCTTACTAATG 856
||||||||||||| | ||| || || |||| ||||||| |||||| |||||||||||||
Sbjct 705 CGATTTAGTGCAAGGCAATTATT-TTACATGGAAGCCAGAGGAAATGGACCTTACTAATG 763
Query 857 TGCCTCTGTGTATGCAATCGACGCTGAAGTATGTTAAGATCAACAAACTGATAACGAAGG 916
|||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 764 TGCCTCGGTGTATGAAATCGACGCTGGTGTATGTTAAGATCAACAAACTGATAACGAAGG 823
Query 917 AGGAAAGTGGGATTAAAGTAGTGAATTACTTTCTTGATAATTCAGCAGTCCTCAAGAAAC 976
|||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 824 AGGAAACTGGGATTAAACTAGTGAATTACTTTCTTGAGAATTCAGCAGTCCTCAAGAAAC 883
Query 977 TGAC-A-------CA----TTCTTCTATGGAGGAGATTCAAGAGCCAGAGAGCTTCATGA 1024
|||| | || ||||||||||||| | |||||||||||||||||| |||||
Sbjct 884 TGACTATGTTTTTCACACATTCTTCTATGGAG-A--TTCAAGAGCCAGAGAGCTACATGA 940
Query 1025 AGCTTCTTACATCCACCAAGCTTTCTCGCAACTGCCAAGTTTTCATTCATTGA 1077
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 941 AGCTTCTTACATCCACGAAGCTTTCTCGCAACTGTCAAGTTTTCATTCATTGA 993
Score = 198 bits (107), Expect = 6e-50
Identities = 209/254 (82%), Gaps = 23/254 (9%)
Strand=Plus/Plus
Query 211 CTTCCGACAGGCGATTCCGTTAAGACGAGCGTTTTGTCGAAGAGATGGGAATTTCTCTGG 270
||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 CTTCCAATAGGCGATTCGGTTAAGACGAGCGTTTTGTCGAAGAGATGGGAATTTCTCTGG 75
Query 271 CTA-ATGGTTTCAAGTTTGGACTTAGACGTCATCAACTTGTCTCGTGACGGCGGAGAAGC 329
||| | ||||||||| ||||||||||||| ||| ||||| ||||||||||| ||||||
Sbjct 76 CTAGA-GGTTTCAAGATTGGACTTAGACGCCATTAACTTCTCTCGTGACGG---AGAAGC 131
Query 330 CTTGGCGAGGTTCATGCACATGTTTCTAGAGTTGAACCGTGGATCATCATCATGCCTAAA 389
||||||||| ||| | | || | || || | | || || | | ||||
Sbjct 132 CTTGGCGAGA--CAT-C---T-TT-C--GATTTTTTC-GAAGAAGAT--T--T---TAAA 173
Query 390 GCATGACGACTCCATGGACGACTGTAACAAAAGAGTCATGGAGTGGATAGCCGAAGTAGT 449
| ||||||| ||||| ||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 174 GAATGACGATTCCATCGACGATTGTAACAAAAGAGTCATGGAGTGGATAACCGAAGTAGT 233
Query 450 CCACGGCGGAGTTC 463
|||| |||||||||
Sbjct 234 CCACCGCGGAGTTC 247
> Ahg898522 jgi|Araly1|898522|Al_scaffold_0005_2488
Length=1533
Score = 161 bits (87), Expect = 8e-39
Identities = 111/122 (91%), Gaps = 4/122 (3%)
Strand=Plus/Plus
Query 55 TTGTTCGCGAAGGATCTGACCTAATCGAAGTCAGGAAATTACTTGGAGAGCACTCAAAGA 114
||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 629 TTGTTCGTAAAGGATCTGACCTAATCGAAGTTAGGAAGTTACTTGGAGAGCACTCAAAGA 688
Query 115 ACAGGATGCTTATGTCAAAGGTGGAGAATCAAGA-G---TGATGAATTTTGATTAGATTC 170
||| ||||||||||||||||||||||||||||| | |||||||||||||| ||||||
Sbjct 689 ACATCATGCTTATGTCAAAGGTGGAGAATCAAGAAGGGGTGATGAATTTTGATAAGATTC 748
Query 171 TG 172
||
Sbjct 749 TG 750
> Ahg898505 jgi|Araly1|898505|Al_scaffold_0005_2471
Length=1533
Score = 161 bits (87), Expect = 8e-39
Identities = 111/122 (91%), Gaps = 4/122 (3%)
Strand=Plus/Plus
Query 55 TTGTTCGCGAAGGATCTGACCTAATCGAAGTCAGGAAATTACTTGGAGAGCACTCAAAGA 114
||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 629 TTGTTCGTAAAGGATCTGACCTAATCGAAGTTAGGAAGTTACTTGGAGAGCACTCAAAGA 688
Query 115 ACAGGATGCTTATGTCAAAGGTGGAGAATCAAGA-G---TGATGAATTTTGATTAGATTC 170
||| ||||||||||||||||||||||||||||| | |||||||||||||| ||||||
Sbjct 689 ACATCATGCTTATGTCAAAGGTGGAGAATCAAGAAGGGGTGATGAATTTTGATAAGATTC 748
Query 171 TG 172
||
Sbjct 749 TG 750
> Ahg340564 jgi|Araly1|340564|fgenesh1_pg.C_scaffold_3000327
Length=1533
Score = 111 bits (60), Expect = 8e-24
Identities = 102/122 (84%), Gaps = 4/122 (3%)
Strand=Plus/Plus
Query 55 TTGTTCGCGAAGGATCTGACCTAATCGAAGTCAGGAAATTACTTGGAGAGCACTCAAAGA 114
||||||| |||||||||| || | || ||||||||||| |||||||||||| ||||||
Sbjct 629 TTGTTCGTAAAGGATCTGATCTGGTGGAGGTCAGGAAATTGCTTGGAGAGCACGCAAAGA 688
Query 115 ACAGGATGCTTATGTCAAAGGTGGAGAATCAAGA-G---TGATGAATTTTGATTAGATTC 170
| ||||||||||||||||||||||||||||| | |||||||||| || ||||||
Sbjct 689 GTATCATGCTTATGTCAAAGGTGGAGAATCAAGAAGGAGTGATGAATTTCGACAAGATTC 748
Query 171 TG 172
||
Sbjct 749 TG 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40105308684
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5