BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G27510.1

Length=754
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933170 jgi|Araly1|933170|scaffold_401158.1                        719    0.0  


> Ahg933170 jgi|Araly1|933170|scaffold_401158.1
Length=506

 Score =  719 bits (389),  Expect = 0.0
 Identities = 466/502 (93%), Gaps = 9/502 (2%)
 Strand=Plus/Plus

Query  77   AAACAAG-AATGGCGACTGTACGAATCTCCTCCACTAGCATGACCAAGGCCGTTCTTAGA  135
            ||| ||| |||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct  12   AAAAAAGAAATGGCGACTGTGCGAATTTCCTCCACTAGCATGACCAAGGCGGTTCTTAGA  71

Query  136  AGCCAGACAACCAACAAGCTCATTACTAACAAGAGCTACAACTTATCTGTTGGATCAACG  195
            |||||||||||||||||||| ||| | ||||||||||||||||||||  |||||||||||
Sbjct  72   AGCCAGACAACCAACAAGCTTATTGCCAACAAGAGCTACAACTTATCCATTGGATCAACG  131

Query  196  AA-AAGGGTTTCGAGATCTTTTGGTTTGAAATGCTCAGCGAATTCTGGTGGTGCTACGAT  254
            || || |||||||||||||||||||||||||||||||||||||||   |||||| |||||
Sbjct  132  AATAA-GGTTTCGAGATCTTTTGGTTTGAAATGCTCAGCGAATTC---TGGTGCCACGAT  187

Query  255  GTCGGCGGTATACAAGGTCAAGCTCTTAGGACCTGATGGTCAAGAAGATGAGTTTGAGGT  314
            ||| |||||||||||||| |||||||||||||| |||||||||||| | || ||||||||
Sbjct  188  GTCAGCGGTATACAAGGTTAAGCTCTTAGGACCCGATGGTCAAGAAAACGAATTTGAGGT  247

Query  315  TCAAGATGATCAGTACATCTTGGATGCAGCTGAAGAGGCAGGAGTTGACTTGCCTTACTC  374
             |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  248  GCAAGATGACCAATACATCTTGGATGCAGCTGAAGAGGCAGGAGTTGACTTGCCTTACTC  307

Query  375  TTGCAGAGCCGGTGCGTGTTCTACTTGCGCGGGTCAGATTGTGTCCGGCAACGTTGACCA  434
            ||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct  308  TTGCAGAGCTGGTGCGTGTTCCACTTGCGCGGGTCAGATTGTGTCGGGCAACGTTGACCA  367

Query  435  GTCGGATGGTTCGTTTCTCGAGGATAGCCACTTGGAGAAGGGTTATGTTTTGACTTGTGT  494
            ||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct  368  GTCAGATGGTTCGTTTCTTGAGGATAGCCACTTGGAGAAGGGTTATGTGTTGACTTGTGT  427

Query  495  GGCTTACCCACAGTCTGACTGTGTGATCCATACCCACAAGGAAACTGAACTCTTCTAAGT  554
            ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  428  GGCTTACCCGCAGTCAGACTGTGTGATCCATACCCACAAGGAAACTGAACTCTTCTAAGT  487

Query  555  CAAAGTCTCTCTATTTGGTAAT  576
            ||| ||||||  ||||||||||
Sbjct  488  CAA-GTCTCT--ATTTGGTAAT  506



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27791606493


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5