BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27520.1
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320535 jgi|Araly1|320535|fgenesh1_pm.C_scaffold_4000592 518 4e-146
Ahg900583 jgi|Araly1|900583|Al_scaffold_0004_1233 516 1e-145
> Ahg320535 jgi|Araly1|320535|fgenesh1_pm.C_scaffold_4000592
Length=912
Score = 518 bits (280), Expect = 4e-146
Identities = 510/612 (83%), Gaps = 51/612 (8%)
Strand=Plus/Plus
Query 224 CCAACAACATTGAAATAGCGCAAGTTTTTCATTGCAACGGCTTATTGTTATGTTCCACGG 283
||||||| | |||||| ||||||||||||| ||||| |||||||||||||||||||||
Sbjct 252 CCAACAA-GTCGAAATAACGCAAGTTTTTCACTGCAATGGCTTATTGTTATGTTCCACGA 310
Query 284 AAGAGGGTAACAAGACTAAACTCGTGGTTGTGAATCCGTGTACTGGTCAGACCAGGTGGA 343
|||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 311 AAGAGGCCGACAAGACTAAACTCGTTGTTGTGAATCCGTGTACTGGTCAAACCAGGTGGA 370
Query 344 TCGAACCAAGAACTGATTACAAT-TATA--ATCATGATATCGCTCTAGGTTACGGAAACA 400
|||||||||||| ||||| |||| |||| || ||| ||| |||||||||||| |||||
Sbjct 371 TCGAACCAAGAAGTGATTGCAATATATATGAT-ATG-TAT-ACTCTAGGTTACGAAAACA 427
Query 401 ACAGCACCAAGAAATCGTACGACAGCTACAAAATCTTGAGGATTACGTATGGTTGCAAAC 460
||| | |||||||||||| || ||||||||||||||||||||| ||||||||||||| |
Sbjct 428 ACA--A-CAAGAAATCGTATGATAGCTACAAAATCTTGAGGATTTCGTATGGTTGCAATC 484
Query 461 TCGTT-GAAATCTTTGAGCTAAAGTCTAATTCATGGAGGGTTCTTTCTAAAGTCCATCCC 519
|| || ||||||||||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct 485 TC-TTGGAAATCTTTGAGCTAAAGTCTAATTCATGGAGGGTTCTTCCTCAAGTCCCTCCC 543
Query 520 AACGTGGAAAA--A-C-AC-TAT-TATGGA-G-G-CGTGTCTTTCAAGGGAAATACCTAC 570
||| ||| | | || | | |||||| | | || |||||| |||||||||||||||
Sbjct 544 AACATGGGTCTGGATCTACGTCTGTATGGAAGAGGCGAGTCTTTGAAGGGAAATACCTAC 603
Query 571 TGGCTTT-CGTATACGAAATTCAATATATTGAGTTTTGATTTCACAACAGAGACATTTAG 629
||| ||| | ||| |||||| ||| ||||||||||||||||||||||||||| ||||
Sbjct 604 TGGTTTTGC-TATTTTAAATTCGGTATGTTGAGTTTTGATTTCACAACAGAGACACTTAG 662
Query 630 AAGTGTGCCTCTTCCGTTTCTGTATCAGG-AT-G-G-TTTC-GTTACTTTAG-CTCTATC 683
| ||||||||||||| |||| |||| || || | | ||| || ||||| | |||||||
Sbjct 663 ACGTGTGCCTCTTCCATTTCCGTATG-GGCATCGTGATTTATGT-ACTTT-GTCTCTATC 719
Query 684 AGTTGTTAGAGAAGAGCAACTT-CTGTTGTTACGTTCGAGGTT-TGATATGGGACAG--G 739
|||||||| |||||| |||||| | || |||||||||||| | ||||| | ||||| |
Sbjct 720 AGTTGTTAAAGAAGAACAACTTTCGGT-GTTACGTTCGAG-TCATGATACGCGACAGATG 777
Query 740 ----T-TGG--G-A--TATGGATGTGTAATAAGATTGATACTGAAACTGTGTTGTCGTGG 789
| ||| | | |||||||| ||| ||||||||||||||||||| | || ||||||
Sbjct 778 GAGATATGGATGGAGATATGGATGAGTACTAAGATTGATACTGAAACT-T-TT-TCGTGG 834
Query 790 AGCAAATCCTTT 801
||||||||||||
Sbjct 835 AGCAAATCCTTT 846
Score = 309 bits (167), Expect = 3e-83
Identities = 201/217 (93%), Gaps = 3/217 (1%)
Strand=Plus/Plus
Query 21 ATGGGATTTGGTAGATGAAATACTCTCTCGACTTCCCGCAACATCTCTAGGTCGACTACG 80
||||||||| |||||||||||||||||||||||||| ||||||| ||| || ||||||||
Sbjct 1 ATGGGATTT-GTAGATGAAATACTCTCTCGACTTCCGGCAACATTTCTTGGCCGACTACG 59
Query 81 ATTTACATGCAAACGATGGAATGCTTTATTCAAAGATCCGGAATTCATCACAAAGCAATT 140
|||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 60 ATTTACATGCAAACGATGGAATGCTTTACTCAAAGATTCGAAATTCATCACAAAGCAATT 119
Query 141 TCATAAAGCAGCAAAGCAAGA-TTTGGTTCTCATGTTGAGTAATTTTGGGGTTTACTCGA 199
|||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct 120 GGATAAAGCAGCAAAGCA-GAATTTGGTTCTCATGTTGAGTAATTTTAGGGTTTACTCGA 178
Query 200 TGAGTACCAATCTCAAAGAAATTCCCAACAACATTGA 236
|||||| ||||||||||||||||| |||||||||||
Sbjct 179 TGAGTATCAATCTCAAAGAAATTCATAACAACATTGA 215
> Ahg900583 jgi|Araly1|900583|Al_scaffold_0004_1233
Length=465
Score = 516 bits (279), Expect = 1e-145
Identities = 405/465 (87%), Gaps = 11/465 (2%)
Strand=Plus/Plus
Query 1 ATGGTGAGATTGGATCTTCCATGGGATTTGGTAGATGAAATACTCTCTCGACTTCCCGCA 60
|||||||| || |||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct 1 ATGGTGAGGTTTGATCTTCCATGGGATTTGGTAGATGAAATACTCTCTAGAGTTCCGGCT 60
Query 61 ACATCTCTAGGTCGACTACGATTTACATGCAAACGATGGAATGCTTTATTCAAAGATCCG 120
|||||| || | ||| ||| || ||| |||||||||||||| ||||||||||||||||||
Sbjct 61 ACATCTGTACGACGATTACAATATACTTGCAAACGATGGAACGCTTTATTCAAAGATCCG 120
Query 121 GAATTCATCACAAAGCAATTTCATAAAGCAGCAAAGCAAGA-TTTGGTTCTCATGTTGAG 179
|||||||||||||||||||| ||||||||| |||||| || |||||||||||||| |||
Sbjct 121 GAATTCATCACAAAGCAATTGGATAAAGCAGTAAAGCA-GAATTTGGTTCTCATGTGGAG 179
Query 180 TAATTTTGGGGTTTACTCGATGAGTACCAATCTCAAAGAAATTCCCAACAACATTGAAAT 239
||||||| ||||||||||| |||| | ||||||||| ||||||| ||| ||||||||||
Sbjct 180 TAATTTTAGGGTTTACTCGCTGAGAATCAATCTCAACGAAATTCAAAACGACATTGAAAT 239
Query 240 AGCGCAAGTTTTTCATTGCAACGGCTTATTGTTATGTTCCACGGAAGAGGGTAACAAGAC 299
| | ||| ||||||| ||||| || |||||||||||||||||| |||||| ||||||||
Sbjct 240 ATCACAACTTTTTCACTGCAATGGATTATTGTTATGTTCCACGAAAGAGGCCAACAAGAC 299
Query 300 TAAACTCGTGGTTGTGAATCCGTGTACTGGTCAGACCAGGTGGATCGAACCAAGAACTGA 359
||||| || ||||| ||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 300 CAAACTTGTTGTTGTAAATCCGTGTACTGGTCAAACCAGGTGGATCGAACCAAGAAGTGA 359
Query 360 TTACA--ATT-ATAATCATGATATCGCTCTAGGTTACGGAAACAACAGCACCAAGAAATC 416
||||| | || || || |||| ||||||||||||| |||||| | || ||||||||
Sbjct 360 TTACACGAAGCATGAT-AT-ATAT-GCTCTAGGTTACGAAAACAATA--AC-AAGAAATC 413
Query 417 GTACGACAGCTACAAAATCTTGAGGATTACGTATGGTTGCAAACT 461
|||||| ||||||||||||||||||||| |||||||| |||||||
Sbjct 414 GTACGATAGCTACAAAATCTTGAGGATTTCGTATGGTGGCAAACT 458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38847252423
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5