BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27530.1
Length=989
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481757 jgi|Araly1|481757|fgenesh2_kg.4__817__AT2G27530.1 1459 0.0
Ahg894117 jgi|Araly1|894117|Al_scaffold_0006_2113 532 1e-150
> Ahg481757 jgi|Araly1|481757|fgenesh2_kg.4__817__AT2G27530.1
Length=895
Score = 1459 bits (790), Expect = 0.0
Identities = 860/895 (96%), Gaps = 0/895 (0%)
Strand=Plus/Plus
Query 1 ATTTTTCTTCTTCCTTGATATAAAATCTTCAGCCGCCTCTGAAACATAACTAGGGCTTCC 60
||||||| ||||||||||||||||||||||||||||||| | |||| || ||||||||||
Sbjct 1 ATTTTTCCTCTTCCTTGATATAAAATCTTCAGCCGCCTCCGTAACACAATTAGGGCTTCC 60
Query 61 GCTTTCTTCACCATTCAGGATCAGAGATTCGTGACCTGAGAAGACACTCAATATGAGTAA 120
||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 61 GCTTTCTTCACCATTTAGGATCAAAGATTCGTGACCTGAGAAGAAACTCAATATGAGTAA 120
Query 121 GCTTCAGAGTGAGGCTGTTAGAGAAGCCATAACGACTATCAAGGGAAAATCTGAGGAGAA 180
|||||||||||||||| |||||||||| || ||||| |||||||||||||||||||||||
Sbjct 121 GCTTCAGAGTGAGGCTCTTAGAGAAGCTATTACGACCATCAAGGGAAAATCTGAGGAGAA 180
Query 181 GAAGCGTAACTTTGTTGAGACAGTGGAGCTTCAGATTGGTCTGAAGAACTATGACCCACA 240
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 AAAACGTAACTTTGTTGAGACAGTGGAACTTCAGATTGGTCTGAAGAACTATGACCCACA 240
Query 241 AAAGGATAAGCGTTTCAGTGGATCTGTGAAGCTCCCACATATTCCTCGCCCAAAAATGAA 300
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 241 AAAGGATAAGCGTTTCAGTGGATCTGTGAAGCTACCGCATATTCCTCGCCCGAAAATGAA 300
Query 301 GATCTGTATGCTTGGAGATGCTCAGCATGTTGAGGAGGCAGAGAAAATGGGACTTAGTAA 360
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 301 GATCTGTATGCTTGGAGATGCTCAACATGTTGAGGAGGCGGAGAAAATGGGACTTAGCAA 360
Query 361 CATGGATGTTGAGGCTTTGAAAAAGCTTAACAAGAACAAGAAGCTTGTTAAGAAGCTTGC 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 361 CATGGATGTTGAGGCTTTGAAGAAGCTTAACAAGAACAAGAAGCTTGTTAAGAAGCTTGC 420
Query 421 TAAGTCTTACCATGCTTTCTTGGCTTCTGAGTCTGTCATTAAGCAGATTCCTCGTCTTCT 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 421 TAAGTCTTACCATGCTTTCTTGGCTTCTGAATCTGTCATTAAGCAGATTCCTCGTCTTCT 480
Query 481 TGGTCCTGGTCTTAACAAGGCAGGAAAGTTCCCAACACTTGTGAGTCACCAAGAGTCATT 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 TGGTCCTGGTCTTAACAAGGCAGGAAAGTTCCCAACTCTTGTGAGTCACCAAGAGTCATT 540
Query 541 GGAAGCAAAGGTGAATGAGACCAAAGCAACAGTGAAGTTCCAGTTGAAGAAAGTTCTGTG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGAAGCAAAGGTGAATGAGACCAAAGCAACAGTGAAGTTCCAGTTGAAGAAAGTTCTGTG 600
Query 601 TATGGGTGTTGCTGTTGGTAACCTTTCCATGGAAGAGAAGCAGCTCTTCCAGAATGTGCA 660
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 601 TATGGGTGTTGCTGTTGGTAACCTTTCAATGGAAGAGAAGCAGCTTTTCCAGAATGTGCA 660
Query 661 GATGAGTGTTAACTTCCTCGTCTCGCTCTTGAAGAAGAATTGGCAAAACGTAAGGTGTTT 720
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 661 GATGAGCGTTAACTTCCTCGTCTCTCTCTTGAAGAAGAATTGGCAAAACGTAAGGTGTTT 720
Query 721 GTACTTGAAGAGCACCATGGGACCACCACAAAGAATCTTTTGAGCTCTCTCTTCTTATCC 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 721 GTACTTGAAGAGCACCATGGGACCACCACAAAGAATCTTTTGAGCTCTCTCTTCTTCTTC 780
Query 781 TTCTTCCATCTCAGAATTTTGCATTCTGTTTTTGTTTCAGAGATCTGTGCTTGTTGGGAT 840
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 781 TTCTTCCATCTCAGAATTTTGCATTGTGCTTTTGTTTCAGAGATCTGTGCTTGTTGGGAT 840
Query 841 ATGGTTTGGATTTATATTAGCAGTTGTTTTTTGTTGACAATATATTATGCAATAT 895
||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||
Sbjct 841 ATGGTTTGGATTTATATTAGCAGTTGTTTTTGGTTGACAATATATGATGCACTAT 895
> Ahg894117 jgi|Araly1|894117|Al_scaffold_0006_2113
Length=654
Score = 532 bits (288), Expect = 1e-150
Identities = 475/563 (84%), Gaps = 22/563 (4%)
Strand=Plus/Plus
Query 196 TGAGAC-AGTGGAGCTTCAGATTGGTCTGAAGAACTATGACCCACAAAAGGATAAGCG-T 253
|||||| | | || || ||||||||||| |||||||||||||| |||||||| ||| | |
Sbjct 87 TGAGACTA-TTGAACTCCAGATTGGTCTTAAGAACTATGACCCTCAAAAGGACAAGAGAT 145
Query 254 TTCAGTGGATCTGTGAAGCTCCCACATATTCCTCGCCCAAAAATGAAGATCTGTATGCTT 313
|| || || || ||||| | || || ||||| | ||||| |||||||| || ||||||
Sbjct 146 TT-AGCGGTTCGGTGAAATTGCCTCACGTTCCTAGGCCAAAGATGAAGATTTGCATGCTT 204
Query 314 GGAGATGCTCAGCATGTTGAGGAGGCAGAGAAAATGGGACTTAGTAA-C-ATGGATGTTG 371
||||| || ||||| || || ||||| ||||| || ||| || | || | ||||||||||
Sbjct 205 GGAGACGCCCAGCACGTCGAAGAGGCTGAGAAGATTGGA-TT-GGAATCTATGGATGTTG 262
Query 372 AGGCT-TTGAAAAAGCTT-AACAAGAACAAGAAGCTTGTTAAGAAGCTTGCTAAG-TCTT 428
| ||| || || ||| || |||||||||||||| ||||||||||||||||||||| ||
Sbjct 263 AAGCTCTT-AAGAAG-TTGAACAAGAACAAGAAACTTGTTAAGAAGCTTGCTAAGAAATT 320
Query 429 ACCATGCTTT-CTTGGCTTCTGAGTCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCT 487
||||||||| ||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 321 -CCATGCTTTCCTT-GCTTCGGAATCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCC 378
Query 488 GGTCTTAACAAGGCAGGAAAGTTCCCAACACTTGTGAGTCACCAAGAGTCATTGGAAGC- 546
||||| ||||||||||||||||||||||| ||||| || ||||||||||| |||||| |
Sbjct 379 GGTCTCAACAAGGCAGGAAAGTTCCCAACTCTTGTTAGCCACCAAGAGTCTTTGGAATCG 438
Query 547 AAAGGTGAATGAGACCAAAG-CAACAGTGAAGTTCCAGTTGAAGAAAGTTCTGTGTATGG 605
|||| |||||||||| |||| ||||||||||||||||| | ||||| ||||| |||||||
Sbjct 439 AAAG-TGAATGAGAC-AAAGGCAACAGTGAAGTTCCAGCTCAAGAAGGTTCTCTGTATGG 496
Query 606 GTGTTGCTGTTGGTAACCTTTCCATGGAAGAGAAGCAGCTCTTCCAGAATGTGCAGATGA 665
| || ||||| || || ||||||||||||||||||||| |||| |||||||| |||||||
Sbjct 497 GAGTCGCTGTCGGGAATCTTTCCATGGAAGAGAAGCAGATCTTTCAGAATGTTCAGATGA 556
Query 666 GTGTTAACTTCCTCGTCTCGCT-CTTGAAGAAGAATTGGCAAAACGTAAGGTGTTTGTAC 724
|||||||||||||||| || || || |||||| || ||||| || || ||||| ||||||
Sbjct 557 GTGTTAACTTCCTCGTTTCACTTCT-GAAGAAAAACTGGCAGAATGTGAGGTGCTTGTAC 615
Query 725 TTGAAGAGCACCATGGGACCACC 747
||||||||||| ||||| |||||
Sbjct 616 TTGAAGAGCACAATGGGTCCACC 638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36750491988
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5