BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27535.1
Length=548
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952584 jgi|Araly1|952584|scaffold_91800001.1 357 5e-98
Ahg933294 jgi|Araly1|933294|scaffold_401282.1 357 5e-98
> Ahg952584 jgi|Araly1|952584|scaffold_91800001.1
Length=290
Score = 357 bits (193), Expect = 5e-98
Identities = 250/277 (90%), Gaps = 5/277 (2%)
Strand=Plus/Plus
Query 203 TCAAGATGAGTAAGCTTAATAGTGATACTCTTAGAGAAGCCATTGCAAATATCACTCGCC 262
|||||||||||||||||||| ||||| || |||||||||||||| |||||||| || |
Sbjct 18 TCAAGATGAGTAAGCTTAATGGTGATGCTGTTAGAGAAGCCATTACAAATATCGTTCTCG 77
Query 263 CATCGGAGGAGAGGAAACTCAAAATGAGACAACTTGAGAGTGAGTCTCTTAGAGAAGCCA 322
|||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 78 CATCTAAGGAGAGGAAACTCAAGATGAGACAACTTGAGAGTGAGGCTCTTAGAGAAGCCA 137
Query 323 TTGCAACTATTGAGGGAAAATCTGAGGAGAAGAAACGTAACGTTGGGAAGACAGTGAAGC 382
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 138 TTACAACTATTGAGGGAAAATCTGAGGAGAAGAAACGTAACGTTGGGAAGACAGTGGAGC 197
Query 383 TTCAA-AGTGAGGCTCTTAGAGAAGCCATTGCAAGTATCAATGAAAAATCTAAAGAGAAG 441
|| || ||||||||||| |||||||||||||||| |||||| || |||||||||||||||
Sbjct 198 TT-AAGAGTGAGGCTCTAAGAGAAGCCATTGCAACTATCAAGGACAAATCTAAAGAGAAG 256
Query 442 AAGCCAGAATAATTTGTGTGTCCATTACGTTGGAATG 478
|||||| ||||||||||| | ||| |||||||||
Sbjct 257 AAGCCATTATAATTTGTGTCT--ATTT-GTTGGAATG 290
> Ahg933294 jgi|Araly1|933294|scaffold_401282.1
Length=290
Score = 357 bits (193), Expect = 5e-98
Identities = 250/277 (90%), Gaps = 5/277 (2%)
Strand=Plus/Plus
Query 203 TCAAGATGAGTAAGCTTAATAGTGATACTCTTAGAGAAGCCATTGCAAATATCACTCGCC 262
|||||||||||||||||||| ||||| || |||||||||||||| |||||||| || |
Sbjct 18 TCAAGATGAGTAAGCTTAATGGTGATGCTGTTAGAGAAGCCATTACAAATATCGTTCTCG 77
Query 263 CATCGGAGGAGAGGAAACTCAAAATGAGACAACTTGAGAGTGAGTCTCTTAGAGAAGCCA 322
|||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 78 CATCTAAGGAGAGGAAACTCAAGATGAGACAACTTGAGAGTGAGGCTCTTAGAGAAGCCA 137
Query 323 TTGCAACTATTGAGGGAAAATCTGAGGAGAAGAAACGTAACGTTGGGAAGACAGTGAAGC 382
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 138 TTACAACTATTGAGGGAAAATCTGAGGAGAAGAAACGTAACGTTGGGAAGACAGTGGAGC 197
Query 383 TTCAA-AGTGAGGCTCTTAGAGAAGCCATTGCAAGTATCAATGAAAAATCTAAAGAGAAG 441
|| || ||||||||||| |||||||||||||||| |||||| || |||||||||||||||
Sbjct 198 TT-AAGAGTGAGGCTCTAAGAGAAGCCATTGCAACTATCAAGGACAAATCTAAAGAGAAG 256
Query 442 AAGCCAGAATAATTTGTGTGTCCATTACGTTGGAATG 478
|||||| ||||||||||| | ||| |||||||||
Sbjct 257 AAGCCATTATAATTTGTGTCT--ATTT-GTTGGAATG 290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19993528636
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5