BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27550.1
Length=866
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486134 jgi|Araly1|486134|fgenesh2_kg.5__2126__AT2G27550.1 1256 0.0
Ahg481755 jgi|Araly1|481755|fgenesh2_kg.4__815__AT2G27550.1 904 0.0
> Ahg486134 jgi|Araly1|486134|fgenesh2_kg.5__2126__AT2G27550.1
Length=843
Score = 1256 bits (680), Expect = 0.0
Identities = 809/867 (93%), Gaps = 25/867 (3%)
Strand=Plus/Plus
Query 1 TCAAATCAACACAAACATATCCCCCAAAGCAGAACTAAAGCAAGCCCAAGCTTGTCTCTC 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 TCAAATCAACACAAACATATCCCCCAAAGCAGAACTAAAGCAAACCCAAGCTTGTCTCTC 60
Query 61 CCCATTCCAACACACACATTTTCATATCAAACTCAAAACACTATTTCCTTAATTTCTTTC 120
|| | |||||||||||||| || |||||||||||| |||||||||||||||||||||
Sbjct 61 CCAACACCAACACACACATTCTC--ATCAAACTCAAATCACTATTTCCTTAATTTCTTT- 117
Query 121 ACTTATTCTTCATTTCTTCGTCTAAATTCTTAACCAAGCAATCGAGATGGCCAGGATTTC 180
| | |||| ||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 118 -C--A--CTTC--TTC-T--TCTAAATTCTTAACCAAGCAATCGAGATGGCCAGGATTTC 167
Query 181 CTCAGACCCGCTTATGGTTGGGAGAGTGATCGGAGACGTTGTGGACAATTGTTTGCAGGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 CTCAGACCCGCTTATGGTTGGGAGAGTGATCGGAGACGTTGTGGACAATTGTTTGCAGGC 227
Query 241 AGTGAAAATGACGGTGACCTATAATTCTGACAAGCAAGTCTACAATGGCCATGAACTTTT 300
|||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 228 AGTGAAAATGACTGTGACCTATAACTCTGACAAGCAAGTCTACAATGGACATGAACTTTT 287
Query 301 CCCTTCTG-TAGTTACATACAAACCTAAGGTTGAAGTTCATGGGGGTGACATGAGATCAT 359
||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 TCCTTCTGCT-GTTACAAACAAACCTAAGGTTGAAGTTCATGGGGGTGACATGAGATCAT 346
Query 360 TCTTCACTTTGGTTATGACTGATCCTGATGTTCCTGGACCTAGTGATCCTTATCTGAGAG 419
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 TCTTCACTTTGGTCATGACTGATCCTGATGTTCCTGGACCTAGTGATCCTTATCTGAGAG 406
Query 420 AGCACTTGCACTGGATTGTTACCGATATCCCGGGGACGACTGATGTATCATTTGGTAAAG 479
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 407 AGCACTTGCACTGGGTTGTTACCGATATCCCGGGGACGACCGATGTATCATTTGGAAAAG 466
Query 480 AGATAATCGGGTACGAGATGCCTCGGCCAAACATAGGGATCCACCGCTTTGTGTATTTGT 539
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 467 AGATAATCGGGTACGAGATGCCTCGGCCAAATATAGGGATCCACCGCTTTGTGTATTTGT 526
Query 540 TGTTCAAGCAGACCCGTAGAGGAAGTGTGGTGTCTGTGCCATCTTACAGAGACCAATTCA 599
||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 527 TGTTCAAACAGAACCGTAGAGGAAGTGTGGTGTCTGTGCCATCGTACAGAGACCAATTCA 586
Query 600 ACACTCGAGAGTTTGCTCATGAGAACGATCTTGGCCTCCCCGTCGCGGCTGTTTTCTTCA 659
|||||||||| ||||| |||||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 587 ACACTCGAGAATTTGCGCATGAGAACGATCTCGGCCTTCCCGTCGCGGCGGTTTTCTTCA 646
Query 660 ACTGCCAGCGTGAGACCGCCGCTAGACGCCGTTGAATGACTTTCCACCGCTGCCGCAGCT 719
|||||||||||||||||||||||||||| ||||||||||| | | | ||||| |
Sbjct 647 ACTGCCAGCGTGAGACCGCCGCTAGACGTCGTTGAATGAC-----AGC-C-GCCGC---T 696
Query 720 GCCCTAACTAACTCTGGCTGTGCCCGGACAATATGTGTTGTTCCATGCATTCTATATTTT 779
||| ||||| | |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 697 GCCGTAACTGATTCTGGCTGTGCCCGGACAATATGTGTTGTTCCATGCATTCTATAATTT 756
Query 780 AGTTACGGGAAACAGCTTTTCCTATCATATTTATGTGTGTATTTGTTATGAACTGTTTGT 839
||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 757 AGTTACGGGAAGCAGCTTTTCCTATCGTATTTATGTGTGTATTTGTTATGAACTCTTTGT 816
Query 840 GATCTGAATAAACTTGGCTTATAATCT 866
|||||||||||||||||||||||||||
Sbjct 817 GATCTGAATAAACTTGGCTTATAATCT 843
> Ahg481755 jgi|Araly1|481755|fgenesh2_kg.4__815__AT2G27550.1
Length=612
Score = 904 bits (489), Expect = 0.0
Identities = 582/624 (93%), Gaps = 18/624 (3%)
Strand=Plus/Plus
Query 248 ATGACGGTGACCTATAATTCTGACAAGCAAGTCTACAATGGCCATGAACTTTTCCCTTCT 307
||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1 ATGACAGTGACCTATAACTCTGACAAGCAAGTCTACAATGGACATGAACTTTTTCCTTCT 60
Query 308 G-TAGTTACATACAAACCTAAGGTTGAAGTTCATGGGGGTGACATGAGATCATTCTTCAC 366
| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCT-GTTACAAACAAACCTAAGGTTGAAGTTCATGGGGGTGACATGAGATCATTCTTCAC 119
Query 367 TTTGGTTATGACTGATCCTGATGTTCCTGGACCTAGTGATCCTTATCTGAGAGAGCACTT 426
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTTGGTCATGACTGATCCTGATGTTCCTGGACCTAGTGATCCTTATCTGAGAGAGCACTT 179
Query 427 GCACTGGATTGTTACCGATATCCCGGGGACGACTGATGTATCATTTGGTAAAGAGATAAT 486
||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 180 GCACTGGGTTGTTACCGATATCCCGGGGACGACCGATGTATCATTTGGAAAAGAGATAAT 239
Query 487 CGGGTACGAGATGCCTCGGCCAAACATAGGGATCCACCGCTTTGTGTATTTGTTGTTCAA 546
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 CGGGTACGAGATGCCTCGGCCAAATATAGGGATCCACCGCTTTGTGTATTTGTTGTTCAA 299
Query 547 GCAGACCCGTAGAGGAAGTGTGGTGTCTGTGCCATCTTACAGAGACCAATTCAACACTCG 606
|||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 300 ACAGAACCGTAGAGGAAGTGTGGTGTCTGTGCCATCGTACAGGGACCAATTCAACACTCG 359
Query 607 AGAGTTTGCTCATGAGAACGATCTTGGCCTCCCCGTCGCGGCTGTTTTCTTCAACTGCCA 666
||| ||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 360 AGAATTTGCGCATGAGAACGATCTCGGCCTTCCCGTCGCGGCGGTTTTCTTCAACTGCCA 419
Query 667 GCGTGAGACCGCCGCTAGACGCCGTTGA--A-TGACTTTCCACCGCTGCCGCAGCTGCCC 723
||||||||||||||||||||| |||||| | |||||| |||||||||| | |
Sbjct 420 GCGTGAGACCGCCGCTAGACGTCGTTGATGAATGACTT-CCACCGCTGC------T-C-- 469
Query 724 TAACTAACTCTGGCTGTGCCCGGACAATATGTGTTGTTCCATGCATTCTATATTTTAGTT 783
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 470 TAACTAATTCTGGCTGTGCCCGGACAATATGTGTTGTTCCATGCATTCTATAGTTTAGTT 529
Query 784 ACG-GGAAACAGCTTTTCCTATCATATTTATGTGTGTATTTGT-TATGAACTGTTTGTGA 841
||| ||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 530 ACGAGGAG-CAGCTTTTCCTATCGTATTTATGTGTGTATTTGTATATGAACTGTTTGTGA 588
Query 842 TCTGAATAAACTTGGCTTATAATC 865
||||||||||||||||||||||||
Sbjct 589 TCTGAATAAACTTGGCTTATAATC 612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32061373197
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5