BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G27590.1 Length=1407 Score E Sequences producing significant alignments: (Bits) Value Ahg481754 jgi|Araly1|481754|fgenesh2_kg.4__814__AT2G27590.1 2021 0.0 Ahg486135 jgi|Araly1|486135|fgenesh2_kg.5__2127__AT2G27590.1 2015 0.0 > Ahg481754 jgi|Araly1|481754|fgenesh2_kg.4__814__AT2G27590.1 Length=1298 Score = 2021 bits (1094), Expect = 0.0 Identities = 1238/1306 (95%), Gaps = 15/1306 (1%) Strand=Plus/Plus Query 1 TTTTCTCTTCTTCCTCGACTGCTCTG-CTCTGCTCTATTCTCTGGATTGAGAATTTGGAC 59 ||||||||||||||||| || || | |||||||||||||||||| || ||| || | Sbjct 1 TTTTCTCTTCTTCCTCG-CT-CTGAGCCTCTGCTCTATTCTCTGG-TT-TGAA-TTCCAA 55 Query 60 TGAGAACGACGACAAATGGGGAAACGAGAGAAAAAACCTAATCGACGTCGCCACAAAGGT 119 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 56 TTTG---GACGACAAATGGGGAAACGAGAGAAAAAACCTAATCGACGTCGCCACAAAGGT 112 Query 120 GAATATTCGAATGATGCTGAAGATTTCTACGATCAACACCCGCCGGCTGTTGCCTCCGTC 179 |||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 113 GAATTTTCGAATGATACTGAAGATTTCTACGATCAACACCCGCCGGTTGTTGCCTCCGTC 172 Query 180 GACgaagaagatgaagaaaactctgacgaagaagaagaagaaaa-tg--at---ggaaac 233 ||||| |||||||||||||||||||| ||||||||||| ||||| || || |||||| Sbjct 173 GACGACGAAGATGAAGAAAACTCTGAGGAAGAAGAAGACGAAAACTGTAATGAAGGAAAC 232 Query 234 gaaTCATCGGATTTGCCTTCAAAGTTTCTCCTTTACCAACAATCCGTTCAGTCACCAAAA 293 ||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| Sbjct 233 GAATCATCGGATTTGCCGTCAAAGTTTCTTCTTTACCAACAATCTGTTCAGTCACCAAAA 292 Query 294 GGAGACATAAGTTACTTGCAGAAGTTCTTTTTAATGTATGTTGGTGGAAGACAACCTTTC 353 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 293 GGAGACATAAGTTACTTGCAGAAGTTCTTTTTAATGTATGTTGGTGGAAGACAACCTCTC 352 Query 354 CATTTCCAAGAAGATTTCTGCGGCACTGCTCTTTTAAGTGCGGAGTGGCTGAAGACTGAC 413 ||||| ||||||||||| || ||||||||||||||||||||||||||||| ||||||||| Sbjct 353 CATTTTCAAGAAGATTTTTGTGGCACTGCTCTTTTAAGTGCGGAGTGGCTCAAGACTGAC 412 Query 414 ACTAGACGGACTGCTATAGGGCTTGATTTTGATCTTGAGGCGTTAGAATGGTGTATGGAT 473 || || ||||||||||||||||| |||||||| |||||||||||||||||||| |||||| Sbjct 413 ACAAGGCGGACTGCTATAGGGCTAGATTTTGACCTTGAGGCGTTAGAATGGTGCATGGAT 472 Query 474 AACAACATTAGTAAACTTGGTTCTGACGTGTATTCAAGAATGTCGCTTTTCCATGGGAAT 533 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 473 AACAACATTAGTAAACTTGGTTCTGACGTGTATTCAAGAATGTCGCTTTTTCATGGGAAT 532 Query 534 GTTTTAACTCCTCTTGAGGCTAAGCAAGTGAAATCTAAATCCCATGAGCTGATACAAAAT 593 ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 533 GTTTTGAGTCCTCTTGAGGCTAAGCAAGTGAAATCTAAATCCCATGAGCTGATACAAAAT 592 Query 594 ATCAGCTTGGATGATGGTGATGATAATGAAGATTTGGCTGATCCGAGTGTTGTCGAATCT 653 || |||||||||||||||||||||||||||||||||| |||||| || |||||||||||| Sbjct 593 ATAAGCTTGGATGATGGTGATGATAATGAAGATTTGGTTGATCCTAGCGTTGTCGAATCT 652 Query 654 TTAGAGAAAGATGGACCTGATTCGTTGCCAAAGAGGGATATTGTGTGTGCTTTTAATTTT 713 |||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| Sbjct 653 TTAGAGAAAGATGGACCTGATTCGTTACCGAAGAGGGATATCGTGTGTGCTTTTAATTTT 712 Query 714 AGTTGTTGTTGTCTCCACAAACGCTCGGAGTTGGTTTCTTACTTCAAGAATGCACGTGAC 773 ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 713 AGTTGCTGTTGTCTCCACAAACGCTCAGAGTTGGTTTCTTACTTCAAGAATGCACGTGAT 772 Query 774 GCTTTGTCTAAGAAAGGTGGTATCTTCGTGATGGATTTATATGGAGGTGCTTCTGCTGAG 833 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 773 GCTTTGTCCAAGAAAGGTGGTATTTTCGTGATGGATTTATATGGAGGTGCTTCTGCTGAG 832 Query 834 GGACAGTTGAAGCTTCAACGGAAATTCCCTAATTTCACGTATACATGGGAGCAGGCTGAG 893 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 833 GGACAGTTGAAGCTTCAACGGAAATTCCCAAATTTCACTTATACATGGGAGCAGGCTGAG 892 Query 894 TTTGATATTTTAAGCCGCAAGACAAGGATCAGTCTGCACTATCACCTTCAGAAGCAGAAC 953 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 893 TTTGACATTTTAAGTCGCAAGACAAGGATCAGTCTGCACTATCACCTTCAGAAGCAGAAC 952 Query 954 AGAAAGATTCGCCATGCTTTTTCATATAGCTGGAGACTGTGGTCATTGCCGGAGATAAAG 1013 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 953 AGAAAGATTCGCCATGCTTTTTCATATAGCTGGAGACTGTGGTCATTACCGGAGATAAAG 1012 Query 1014 GATTGTATGGAGGAAGCTGGGTTTAGCTCAGTCCATTTCTGGCTCAGAGAAATGCCGGAC 1073 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1013 GACTGTATGGAGGAAGCTGGGTTTAGCTCAGTCCATTTCTGGCTCAGAGAAATGCCGGAC 1072 Query 1074 GCTTCTGAAATGCGTAGAACAGATGGGTTTGGTGCTGGACGTGATATCAAGTACGAACAA 1133 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1073 GCTTCTGAAATGCGTAGAACAGATGGGTTTGGTGCTGGACGTGATATCAAGTACGAACAA 1132 Query 1134 GTCAAGAGCTTTCAACAGTGTGATTCTTGGAATGCTTACATTGTTGCGGTCAGCCTCTAG 1193 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1133 GTCAAGAGCTTTCAACAGTGTGATTCTTGGAATGCTTACATTGTTGCGGTCAGCCTTTAG 1192 Query 1194 TTATGCTTTCTATCTTTTGATCAAAAGACACTAGCCCTTTAACTCAGATCCTTTGTCGAT 1253 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1193 TTATGCTTTCTATCTTTTGATCAAAAGACACTAGCCCTTTAAATCAGATCCTTTGTCGAT 1252 Query 1254 TTTACATCTAGTATTTATTTCTGACACGCACTGGTTTAGTTTCATG 1299 ||||||||| |||||||||||||||| ||||||||||||||| ||| Sbjct 1253 TTTACATCTGGTATTTATTTCTGACATGCACTGGTTTAGTTTTATG 1298 > Ahg486135 jgi|Araly1|486135|fgenesh2_kg.5__2127__AT2G27590.1 Length=1298 Score = 2015 bits (1091), Expect = 0.0 Identities = 1237/1306 (95%), Gaps = 15/1306 (1%) Strand=Plus/Plus Query 1 TTTTCTCTTCTTCCTCGACTGCTCTG-CTCTGCTCTATTCTCTGGATTGAGAATTTGGAC 59 ||||||||||||||||| || || | |||||||||||||||||| || ||| || | Sbjct 1 TTTTCTCTTCTTCCTCG-CT-CTGAGCCTCTGCTCTATTCTCTGG-TT-TGAA-TTCCAA 55 Query 60 TGAGAACGACGACAAATGGGGAAACGAGAGAAAAAACCTAATCGACGTCGCCACAAAGGT 119 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 56 TTTG---GACGACAAATGGGGAAACGAGAGAAAAAACCTAATCGACGTCGCCACAAAGGT 112 Query 120 GAATATTCGAATGATGCTGAAGATTTCTACGATCAACACCCGCCGGCTGTTGCCTCCGTC 179 |||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 113 GAATTTTCGAATGATACTGAAGATTTCTACGATCAACACCCGCCGGTTGTTGCCTCCGTC 172 Query 180 GACgaagaagatgaagaaaactctgacgaagaagaagaagaaaa-tg--at---ggaaac 233 ||||| |||||||||||||||||||| ||||||||||| ||||| || || |||||| Sbjct 173 GACGACGAAGATGAAGAAAACTCTGAGGAAGAAGAAGACGAAAACTGTAATGAAGGAAAC 232 Query 234 gaaTCATCGGATTTGCCTTCAAAGTTTCTCCTTTACCAACAATCCGTTCAGTCACCAAAA 293 ||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| Sbjct 233 GAATCATCGGATTTGCCGTCAAAGTTTCTTCTTTACCAACAATCTGTTCAGTCACCAAAA 292 Query 294 GGAGACATAAGTTACTTGCAGAAGTTCTTTTTAATGTATGTTGGTGGAAGACAACCTTTC 353 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 293 GGAGACATAAGTTACTTGCAGAAGTTCTTTTTAATGTATGTTGGTGGAAGACAACCTCTC 352 Query 354 CATTTCCAAGAAGATTTCTGCGGCACTGCTCTTTTAAGTGCGGAGTGGCTGAAGACTGAC 413 ||||| ||||||||||| || ||||||||||||||||||||||||||||| ||||||||| Sbjct 353 CATTTTCAAGAAGATTTTTGTGGCACTGCTCTTTTAAGTGCGGAGTGGCTCAAGACTGAC 412 Query 414 ACTAGACGGACTGCTATAGGGCTTGATTTTGATCTTGAGGCGTTAGAATGGTGTATGGAT 473 || || ||||||||||||||||| |||||||| |||||||||||||||||||| |||||| Sbjct 413 ACAAGGCGGACTGCTATAGGGCTAGATTTTGACCTTGAGGCGTTAGAATGGTGCATGGAT 472 Query 474 AACAACATTAGTAAACTTGGTTCTGACGTGTATTCAAGAATGTCGCTTTTCCATGGGAAT 533 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 473 AACAACATTAGTAAACTTGGTTCTGACGTGTATTCAAGAATGTCGCTTTTTCATGGGAAT 532 Query 534 GTTTTAACTCCTCTTGAGGCTAAGCAAGTGAAATCTAAATCCCATGAGCTGATACAAAAT 593 ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 533 GTTTTGAGTCCTCTTGAGGCTAAGCAAGTGAAATCTAAATCCCATGAGCTGATACAAAAT 592 Query 594 ATCAGCTTGGATGATGGTGATGATAATGAAGATTTGGCTGATCCGAGTGTTGTCGAATCT 653 || |||||||||||||||||||||||||||||||||| |||||| || |||||||||||| Sbjct 593 ATAAGCTTGGATGATGGTGATGATAATGAAGATTTGGTTGATCCTAGCGTTGTCGAATCT 652 Query 654 TTAGAGAAAGATGGACCTGATTCGTTGCCAAAGAGGGATATTGTGTGTGCTTTTAATTTT 713 |||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| Sbjct 653 TTAGAGAAAGATGGACCTGATTCGTTACCGAAGAGGGATATCGTGTGTGCTTTTAATTTT 712 Query 714 AGTTGTTGTTGTCTCCACAAACGCTCGGAGTTGGTTTCTTACTTCAAGAATGCACGTGAC 773 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 713 AGTTGCTGTTGTCTCCAGGAACGCTCGGAGTTGGTTTCTTACTTCAAGAATGCACGTGAT 772 Query 774 GCTTTGTCTAAGAAAGGTGGTATCTTCGTGATGGATTTATATGGAGGTGCTTCTGCTGAG 833 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 773 GCTTTGTCCAAGAAAGGTGGTATTTTCGTGATGGATTTATATGGAGGTGCTTCTGCTGAG 832 Query 834 GGACAGTTGAAGCTTCAACGGAAATTCCCTAATTTCACGTATACATGGGAGCAGGCTGAG 893 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 833 GGACAGTTGAAGCTTCAACGGAAATTCCCAAATTTCACTTATACATGGGAGCAGGCTGAG 892 Query 894 TTTGATATTTTAAGCCGCAAGACAAGGATCAGTCTGCACTATCACCTTCAGAAGCAGAAC 953 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 893 TTTGACATTTTAAGTCGCAAGACAAGGATCAGTCTGCACTATCACCTTCAGAAGCAGAAC 952 Query 954 AGAAAGATTCGCCATGCTTTTTCATATAGCTGGAGACTGTGGTCATTGCCGGAGATAAAG 1013 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 953 AGAAAGATTCGCCATGCTTTTTCATATAGCTGGAGACTGTGGTCATTACCGGAGATAAAG 1012 Query 1014 GATTGTATGGAGGAAGCTGGGTTTAGCTCAGTCCATTTCTGGCTCAGAGAAATGCCGGAC 1073 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1013 GACTGTATGGAGGAAGCTGGGTTTAGCTCAGTCCATTTCTGGCTCAGAGAAATGCCGGAC 1072 Query 1074 GCTTCTGAAATGCGTAGAACAGATGGGTTTGGTGCTGGACGTGATATCAAGTACGAACAA 1133 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1073 GCTTCTGAAATGCGTAGAACAGATGGGTTTGGTGCTGGACGTGATATCAAGTACGAACAA 1132 Query 1134 GTCAAGAGCTTTCAACAGTGTGATTCTTGGAATGCTTACATTGTTGCGGTCAGCCTCTAG 1193 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1133 GTCAAGAGCTTTCAACAGTGTGATTCTTGGAATGCTTACATTGTTGCGGTCAGCCTTTAG 1192 Query 1194 TTATGCTTTCTATCTTTTGATCAAAAGACACTAGCCCTTTAACTCAGATCCTTTGTCGAT 1253 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1193 TTATGCTTTCTATCTTTTGATCAAAAGACACTAGCCCTTTAAATCAGATCCTTTGTCGAT 1252 Query 1254 TTTACATCTAGTATTTATTTCTGACACGCACTGGTTTAGTTTCATG 1299 ||||||||| |||||||||||||||| ||||||||||||||| ||| Sbjct 1253 TTTACATCTGGTATTTATTTCTGACATGCACTGGTTTAGTTTTATG 1298 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52602628345 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5