BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27590.1
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481754 jgi|Araly1|481754|fgenesh2_kg.4__814__AT2G27590.1 2021 0.0
Ahg486135 jgi|Araly1|486135|fgenesh2_kg.5__2127__AT2G27590.1 2015 0.0
> Ahg481754 jgi|Araly1|481754|fgenesh2_kg.4__814__AT2G27590.1
Length=1298
Score = 2021 bits (1094), Expect = 0.0
Identities = 1238/1306 (95%), Gaps = 15/1306 (1%)
Strand=Plus/Plus
Query 1 TTTTCTCTTCTTCCTCGACTGCTCTG-CTCTGCTCTATTCTCTGGATTGAGAATTTGGAC 59
||||||||||||||||| || || | |||||||||||||||||| || ||| || |
Sbjct 1 TTTTCTCTTCTTCCTCG-CT-CTGAGCCTCTGCTCTATTCTCTGG-TT-TGAA-TTCCAA 55
Query 60 TGAGAACGACGACAAATGGGGAAACGAGAGAAAAAACCTAATCGACGTCGCCACAAAGGT 119
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 TTTG---GACGACAAATGGGGAAACGAGAGAAAAAACCTAATCGACGTCGCCACAAAGGT 112
Query 120 GAATATTCGAATGATGCTGAAGATTTCTACGATCAACACCCGCCGGCTGTTGCCTCCGTC 179
|||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 113 GAATTTTCGAATGATACTGAAGATTTCTACGATCAACACCCGCCGGTTGTTGCCTCCGTC 172
Query 180 GACgaagaagatgaagaaaactctgacgaagaagaagaagaaaa-tg--at---ggaaac 233
||||| |||||||||||||||||||| ||||||||||| ||||| || || ||||||
Sbjct 173 GACGACGAAGATGAAGAAAACTCTGAGGAAGAAGAAGACGAAAACTGTAATGAAGGAAAC 232
Query 234 gaaTCATCGGATTTGCCTTCAAAGTTTCTCCTTTACCAACAATCCGTTCAGTCACCAAAA 293
||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 233 GAATCATCGGATTTGCCGTCAAAGTTTCTTCTTTACCAACAATCTGTTCAGTCACCAAAA 292
Query 294 GGAGACATAAGTTACTTGCAGAAGTTCTTTTTAATGTATGTTGGTGGAAGACAACCTTTC 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 293 GGAGACATAAGTTACTTGCAGAAGTTCTTTTTAATGTATGTTGGTGGAAGACAACCTCTC 352
Query 354 CATTTCCAAGAAGATTTCTGCGGCACTGCTCTTTTAAGTGCGGAGTGGCTGAAGACTGAC 413
||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 353 CATTTTCAAGAAGATTTTTGTGGCACTGCTCTTTTAAGTGCGGAGTGGCTCAAGACTGAC 412
Query 414 ACTAGACGGACTGCTATAGGGCTTGATTTTGATCTTGAGGCGTTAGAATGGTGTATGGAT 473
|| || ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 413 ACAAGGCGGACTGCTATAGGGCTAGATTTTGACCTTGAGGCGTTAGAATGGTGCATGGAT 472
Query 474 AACAACATTAGTAAACTTGGTTCTGACGTGTATTCAAGAATGTCGCTTTTCCATGGGAAT 533
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 473 AACAACATTAGTAAACTTGGTTCTGACGTGTATTCAAGAATGTCGCTTTTTCATGGGAAT 532
Query 534 GTTTTAACTCCTCTTGAGGCTAAGCAAGTGAAATCTAAATCCCATGAGCTGATACAAAAT 593
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 GTTTTGAGTCCTCTTGAGGCTAAGCAAGTGAAATCTAAATCCCATGAGCTGATACAAAAT 592
Query 594 ATCAGCTTGGATGATGGTGATGATAATGAAGATTTGGCTGATCCGAGTGTTGTCGAATCT 653
|| |||||||||||||||||||||||||||||||||| |||||| || ||||||||||||
Sbjct 593 ATAAGCTTGGATGATGGTGATGATAATGAAGATTTGGTTGATCCTAGCGTTGTCGAATCT 652
Query 654 TTAGAGAAAGATGGACCTGATTCGTTGCCAAAGAGGGATATTGTGTGTGCTTTTAATTTT 713
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 653 TTAGAGAAAGATGGACCTGATTCGTTACCGAAGAGGGATATCGTGTGTGCTTTTAATTTT 712
Query 714 AGTTGTTGTTGTCTCCACAAACGCTCGGAGTTGGTTTCTTACTTCAAGAATGCACGTGAC 773
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 713 AGTTGCTGTTGTCTCCACAAACGCTCAGAGTTGGTTTCTTACTTCAAGAATGCACGTGAT 772
Query 774 GCTTTGTCTAAGAAAGGTGGTATCTTCGTGATGGATTTATATGGAGGTGCTTCTGCTGAG 833
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 773 GCTTTGTCCAAGAAAGGTGGTATTTTCGTGATGGATTTATATGGAGGTGCTTCTGCTGAG 832
Query 834 GGACAGTTGAAGCTTCAACGGAAATTCCCTAATTTCACGTATACATGGGAGCAGGCTGAG 893
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 833 GGACAGTTGAAGCTTCAACGGAAATTCCCAAATTTCACTTATACATGGGAGCAGGCTGAG 892
Query 894 TTTGATATTTTAAGCCGCAAGACAAGGATCAGTCTGCACTATCACCTTCAGAAGCAGAAC 953
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 TTTGACATTTTAAGTCGCAAGACAAGGATCAGTCTGCACTATCACCTTCAGAAGCAGAAC 952
Query 954 AGAAAGATTCGCCATGCTTTTTCATATAGCTGGAGACTGTGGTCATTGCCGGAGATAAAG 1013
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 953 AGAAAGATTCGCCATGCTTTTTCATATAGCTGGAGACTGTGGTCATTACCGGAGATAAAG 1012
Query 1014 GATTGTATGGAGGAAGCTGGGTTTAGCTCAGTCCATTTCTGGCTCAGAGAAATGCCGGAC 1073
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 GACTGTATGGAGGAAGCTGGGTTTAGCTCAGTCCATTTCTGGCTCAGAGAAATGCCGGAC 1072
Query 1074 GCTTCTGAAATGCGTAGAACAGATGGGTTTGGTGCTGGACGTGATATCAAGTACGAACAA 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 GCTTCTGAAATGCGTAGAACAGATGGGTTTGGTGCTGGACGTGATATCAAGTACGAACAA 1132
Query 1134 GTCAAGAGCTTTCAACAGTGTGATTCTTGGAATGCTTACATTGTTGCGGTCAGCCTCTAG 1193
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1133 GTCAAGAGCTTTCAACAGTGTGATTCTTGGAATGCTTACATTGTTGCGGTCAGCCTTTAG 1192
Query 1194 TTATGCTTTCTATCTTTTGATCAAAAGACACTAGCCCTTTAACTCAGATCCTTTGTCGAT 1253
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1193 TTATGCTTTCTATCTTTTGATCAAAAGACACTAGCCCTTTAAATCAGATCCTTTGTCGAT 1252
Query 1254 TTTACATCTAGTATTTATTTCTGACACGCACTGGTTTAGTTTCATG 1299
||||||||| |||||||||||||||| ||||||||||||||| |||
Sbjct 1253 TTTACATCTGGTATTTATTTCTGACATGCACTGGTTTAGTTTTATG 1298
> Ahg486135 jgi|Araly1|486135|fgenesh2_kg.5__2127__AT2G27590.1
Length=1298
Score = 2015 bits (1091), Expect = 0.0
Identities = 1237/1306 (95%), Gaps = 15/1306 (1%)
Strand=Plus/Plus
Query 1 TTTTCTCTTCTTCCTCGACTGCTCTG-CTCTGCTCTATTCTCTGGATTGAGAATTTGGAC 59
||||||||||||||||| || || | |||||||||||||||||| || ||| || |
Sbjct 1 TTTTCTCTTCTTCCTCG-CT-CTGAGCCTCTGCTCTATTCTCTGG-TT-TGAA-TTCCAA 55
Query 60 TGAGAACGACGACAAATGGGGAAACGAGAGAAAAAACCTAATCGACGTCGCCACAAAGGT 119
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 TTTG---GACGACAAATGGGGAAACGAGAGAAAAAACCTAATCGACGTCGCCACAAAGGT 112
Query 120 GAATATTCGAATGATGCTGAAGATTTCTACGATCAACACCCGCCGGCTGTTGCCTCCGTC 179
|||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 113 GAATTTTCGAATGATACTGAAGATTTCTACGATCAACACCCGCCGGTTGTTGCCTCCGTC 172
Query 180 GACgaagaagatgaagaaaactctgacgaagaagaagaagaaaa-tg--at---ggaaac 233
||||| |||||||||||||||||||| ||||||||||| ||||| || || ||||||
Sbjct 173 GACGACGAAGATGAAGAAAACTCTGAGGAAGAAGAAGACGAAAACTGTAATGAAGGAAAC 232
Query 234 gaaTCATCGGATTTGCCTTCAAAGTTTCTCCTTTACCAACAATCCGTTCAGTCACCAAAA 293
||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 233 GAATCATCGGATTTGCCGTCAAAGTTTCTTCTTTACCAACAATCTGTTCAGTCACCAAAA 292
Query 294 GGAGACATAAGTTACTTGCAGAAGTTCTTTTTAATGTATGTTGGTGGAAGACAACCTTTC 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 293 GGAGACATAAGTTACTTGCAGAAGTTCTTTTTAATGTATGTTGGTGGAAGACAACCTCTC 352
Query 354 CATTTCCAAGAAGATTTCTGCGGCACTGCTCTTTTAAGTGCGGAGTGGCTGAAGACTGAC 413
||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 353 CATTTTCAAGAAGATTTTTGTGGCACTGCTCTTTTAAGTGCGGAGTGGCTCAAGACTGAC 412
Query 414 ACTAGACGGACTGCTATAGGGCTTGATTTTGATCTTGAGGCGTTAGAATGGTGTATGGAT 473
|| || ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 413 ACAAGGCGGACTGCTATAGGGCTAGATTTTGACCTTGAGGCGTTAGAATGGTGCATGGAT 472
Query 474 AACAACATTAGTAAACTTGGTTCTGACGTGTATTCAAGAATGTCGCTTTTCCATGGGAAT 533
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 473 AACAACATTAGTAAACTTGGTTCTGACGTGTATTCAAGAATGTCGCTTTTTCATGGGAAT 532
Query 534 GTTTTAACTCCTCTTGAGGCTAAGCAAGTGAAATCTAAATCCCATGAGCTGATACAAAAT 593
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 GTTTTGAGTCCTCTTGAGGCTAAGCAAGTGAAATCTAAATCCCATGAGCTGATACAAAAT 592
Query 594 ATCAGCTTGGATGATGGTGATGATAATGAAGATTTGGCTGATCCGAGTGTTGTCGAATCT 653
|| |||||||||||||||||||||||||||||||||| |||||| || ||||||||||||
Sbjct 593 ATAAGCTTGGATGATGGTGATGATAATGAAGATTTGGTTGATCCTAGCGTTGTCGAATCT 652
Query 654 TTAGAGAAAGATGGACCTGATTCGTTGCCAAAGAGGGATATTGTGTGTGCTTTTAATTTT 713
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 653 TTAGAGAAAGATGGACCTGATTCGTTACCGAAGAGGGATATCGTGTGTGCTTTTAATTTT 712
Query 714 AGTTGTTGTTGTCTCCACAAACGCTCGGAGTTGGTTTCTTACTTCAAGAATGCACGTGAC 773
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 713 AGTTGCTGTTGTCTCCAGGAACGCTCGGAGTTGGTTTCTTACTTCAAGAATGCACGTGAT 772
Query 774 GCTTTGTCTAAGAAAGGTGGTATCTTCGTGATGGATTTATATGGAGGTGCTTCTGCTGAG 833
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 773 GCTTTGTCCAAGAAAGGTGGTATTTTCGTGATGGATTTATATGGAGGTGCTTCTGCTGAG 832
Query 834 GGACAGTTGAAGCTTCAACGGAAATTCCCTAATTTCACGTATACATGGGAGCAGGCTGAG 893
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 833 GGACAGTTGAAGCTTCAACGGAAATTCCCAAATTTCACTTATACATGGGAGCAGGCTGAG 892
Query 894 TTTGATATTTTAAGCCGCAAGACAAGGATCAGTCTGCACTATCACCTTCAGAAGCAGAAC 953
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 TTTGACATTTTAAGTCGCAAGACAAGGATCAGTCTGCACTATCACCTTCAGAAGCAGAAC 952
Query 954 AGAAAGATTCGCCATGCTTTTTCATATAGCTGGAGACTGTGGTCATTGCCGGAGATAAAG 1013
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 953 AGAAAGATTCGCCATGCTTTTTCATATAGCTGGAGACTGTGGTCATTACCGGAGATAAAG 1012
Query 1014 GATTGTATGGAGGAAGCTGGGTTTAGCTCAGTCCATTTCTGGCTCAGAGAAATGCCGGAC 1073
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 GACTGTATGGAGGAAGCTGGGTTTAGCTCAGTCCATTTCTGGCTCAGAGAAATGCCGGAC 1072
Query 1074 GCTTCTGAAATGCGTAGAACAGATGGGTTTGGTGCTGGACGTGATATCAAGTACGAACAA 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 GCTTCTGAAATGCGTAGAACAGATGGGTTTGGTGCTGGACGTGATATCAAGTACGAACAA 1132
Query 1134 GTCAAGAGCTTTCAACAGTGTGATTCTTGGAATGCTTACATTGTTGCGGTCAGCCTCTAG 1193
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1133 GTCAAGAGCTTTCAACAGTGTGATTCTTGGAATGCTTACATTGTTGCGGTCAGCCTTTAG 1192
Query 1194 TTATGCTTTCTATCTTTTGATCAAAAGACACTAGCCCTTTAACTCAGATCCTTTGTCGAT 1253
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1193 TTATGCTTTCTATCTTTTGATCAAAAGACACTAGCCCTTTAAATCAGATCCTTTGTCGAT 1252
Query 1254 TTTACATCTAGTATTTATTTCTGACACGCACTGGTTTAGTTTCATG 1299
||||||||| |||||||||||||||| ||||||||||||||| |||
Sbjct 1253 TTTACATCTGGTATTTATTTCTGACATGCACTGGTTTAGTTTTATG 1298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52602628345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5