BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27600.1
Length=1758
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481753 jgi|Araly1|481753|fgenesh2_kg.4__813__AT2G27600.1 2844 0.0
Ahg311880 jgi|Araly1|311880|fgenesh1_pm.C_scaffold_1000660 547 9e-155
Ahg320627 jgi|Araly1|320627|fgenesh1_pm.C_scaffold_4000684 122 6e-27
> Ahg481753 jgi|Araly1|481753|fgenesh2_kg.4__813__AT2G27600.1
Length=1754
Score = 2844 bits (1540), Expect = 0.0
Identities = 1697/1769 (96%), Gaps = 26/1769 (1%)
Strand=Plus/Plus
Query 1 ATCGCTTTGCATAatccattccttcttct-c-t---ctt-ctc-catctccttcctccga 53
||||||||||||||||||||||||||||| | | ||| ||| | ||||||||||||||
Sbjct 1 ATCGCTTTGCATAATCCATTCCTTCTTCTCCATCCCCTTCCTCTC-TCTCCTTCCTCCGA 59
Query 54 tcttcgtctccaattcggaatcttcct-ATCACAATTTCAAGGCTCCTTTAACCCTTGAT 112
||||| ||| ||||| |||||||| || ||||| ||||||| |||| | | |||||||
Sbjct 60 TCTTCTTCTTCAATTTGGAATCTT-CTCATCACGATTTCAAACCTCCATCGATCCTTGAT 118
Query 113 CATCACCGATTCAATCAATTCGGAATCACAATTTCAAATCGAGAGAATTTCAATTTCTCT 172
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 119 CATCACCGATTCAATCAATTTGGAATCACAATTTCAAATCGAGAGAATTTCAATTTCTCT 178
Query 173 TGTAAAACCCT-AAATTATGTACAGCAATTTCAAGGAACAAGCGATCGAGTACGTGAAGC 231
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GGTAAAACCCTAAAATTATGTACAGCAATTTCAAGGAACAAGCGATCGAGTACGTGAAGC 238
Query 232 AAGCGGTTCATGAAGACAATGCTGGGAATTACAATAAAGCTTTCCCTCTATACATGAACG 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AAGCGGTTCATGAAGACAATGCTGGGAATTACAATAAAGCTTTCCCTCTATACATGAACG 298
Query 292 CGCTTGAGTACTTCAAAACTCATCTCAAGTATGAGAAGAACCCTAAGATCAGAGAAGCTA 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CGCTTGAGTACTTCAAAACTCATCTCAAGTATGAGAAGAACCCTAAGATCAGAGAAGCTA 358
Query 352 TTACCCAGAAATTCACCGAGTATCTCCGTCGTGCTGAGGAGATCCGTGCTGTTCTCGATG 411
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 359 TTACCCAGAAATTCACCGAGTATCTTCGTCGTGCTGAGGAGATCCGTGCTGTTCTCGATG 418
Query 412 AAGGTGGATCGGGTCCAGGATCTAACGGTGATGCAGCCGTCGCAACGAGGCCCAAA-ACT 470
||||||||||||||||||||||||||||||| || || || ||||||||| ||||| |||
Sbjct 419 AAGGTGGATCGGGTCCAGGATCTAACGGTGACGCTGCGGTTGCAACGAGG-CCAAAGACT 477
Query 471 AAGCCTAAAGATGGAGAAGGTGGTGGTAAAGATGGAGAAGATCCTGAACAATCAAAGCTT 530
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 478 AAGCCCAAAGATGGAGAAGGTGGTGGTAAAGATGGAGAAGATCCTGAGCAATCGAAGCTT 537
Query 531 CGAGCTGGGTTAAACTCTGCGATTGTTAGAGAGAAACCTAATATCAAGTGGTCAGATGTT 590
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 538 CGAGCTGGGTTAAACTCTGCTATTGTTAGGGAGAAACCTAATATCAAGTGGTCTGATGTT 597
Query 591 GCTGGGCTTGAAAGTGCTAAACAAGCTCTGCAGGAAGCTGTGATTTTGCCTGTCAAGTTT 650
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 598 GCTGGGCTTGAAAGTGCTAAACAAGCTTTGCAGGAAGCTGTGATTTTGCCTGTTAAGTTT 657
Query 651 CCACAGTTCTTCACTGGAAAGAGACGGCCTTGGAGAGCTTTTCTGTTGTATGGGCCTCCT 710
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 658 CCACAGTTCTTCACAGGAAAGAGACGGCCATGGAGAGCTTTTCTGTTGTATGGGCCTCCT 717
Query 711 GGAACAGGAAAATCGTATTTGGCTAAGGCTGTTGCCACTGAAGCTGACTCTACCTTTTTT 770
|||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 718 GGAACAGGAAAATCTTATTTGGCTAAGGCTGTTGCTACTGAAGCAGACTCTACCTTTTTC 777
Query 771 AGCGTGTCTTCATCAGACCTTGTCTCGAAGTGGATGGGTGAAAGTGAGAAGCTAGTATCA 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AGCGTGTCTTCATCAGACCTTGTCTCGAAGTGGATGGGTGAAAGTGAGAAGCTAGTATCA 837
Query 831 AACCTTTTCGAGATGGCCCGTGAAAGTGCTCCCTCGATTATTTTTGTTGATGAGATAGAT 890
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 838 AACCTTTTCGAGATGGCCCGTGAAAGTGCTCCATCGATTATTTTTGTTGATGAGATAGAT 897
Query 891 TCTTTGTGTGGTACACGTGGAGAAGGAAACGAGAGTGAAGCTTCAAGACGTATCAAAACA 950
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TCTTTGTGCGGTACACGTGGAGAAGGAAACGAGAGTGAAGCTTCAAGACGTATCAAAACA 957
Query 951 GAGCTTCTAGTGCAGATGCAGGGTGTTGGACACAATGATGAGAAAGTACTTGTACTTGCA 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GAGCTTCTAGTGCAGATGCAGGGTGTTGGACACAATGATGAGAAAGTACTTGTACTTGCA 1017
Query 1011 GCAACCAATACACCCTATGCTCTTGATCAGGCTATCCGGCGACGTTTTGACAAGCGTATC 1070
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1018 GCAACCAATACACCCTATGCTCTTGATCAGGCTATCCGACGACGTTTTGACAAGCGTATC 1077
Query 1071 TATATTCCTCTCCCAGAGGCCAAGGCTCGGCAGCACATGTTCAAAGTCCACTTGGGAGAT 1130
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1078 TATATTCCTCTCCCAGAGGCCAAGGCTCGTCAGCACATGTTCAAAGTCCATTTGGGAGAT 1137
Query 1131 ACACCTCATAATTTAACTGAACCTGATTTTGAATATTTAGGCCAAAAGACAGAAGGGTTT 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ACACCTCATAATTTAACTGAACCTGATTTTGAATATTTAGGCCAAAAGACAGAAGGGTTT 1197
Query 1191 TCTGGTTCAGATGTGTCTGTTTGTGTAAAAGATGTTCTGTTTGAACCTGTTCGTAAAACA 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TCTGGTTCAGATGTGTCTGTTTGTGTAAAAGATGTTCTGTTTGAACCTGTTCGTAAAACA 1257
Query 1251 CAAGATGCAATGTTCTTTTTCAAGTCTCCTGATGGTACATGGATGCCATGTGGGCCTAGG 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CAAGATGCAATGTTCTTTTTCAAGTCTCCTGATGGTACATGGATGCCATGTGGGCCTAGG 1317
Query 1311 CACCCTGGTGCCATCCAGACTACAATGCAAGATCTAGCAACAAAAGGGCTTGCCGAAAAG 1370
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1318 CACCCTGGTGCCATCCAGACTACAATGCAAGATCTAGCAGCAAAAGGGCTTGGCGAAAAG 1377
Query 1371 ATTATTCCACCACCAATCACCAGAACAGATTTCGAGAAGGTACTTGCAAGACAAAGGCCA 1430
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1378 ATTATTCCACCACCAATCACCAGAACCGATTTCGAAAAGGTACTTGCTAGACAAAGGCCA 1437
Query 1431 ACAGTGAGCAAGTCTGACCTTGATGTCCACGAGAGATTCACACAGGAGTTTGGAGAAGAA 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 ACAGTGAGCAAGTCTGACCTTGATGTCCACGAGAGATTCACACAGGAGTTTGGAGAAGAA 1497
Query 1491 GGTTGATAGATTTGACATTCCCATCAAGCATCTTTCACAATCATATTATTATTAGTCTCT 1550
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1498 GGTTGATAGATTTGACATTCC-ATCAAGCATCTTTCACAATCATATTATTATTAGTCTCT 1556
Query 1551 TCACCATCTCCTTATGTATGTACTGAGAAGCAAAACAAAATCTCAAACCCATGTTTGATT 1610
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 TCACTTTCTCCTTATGTATGTACTGAGAAGCAAAACAAAATCTCAAACCCATGTTTGATT 1616
Query 1611 TCTTCCCAAAA-CATTGAATTTGCTTTATTTCTCGAATTGTGTaaaaaaaaaaTGTTCTG 1669
| |||||||| ||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1617 CCATCCCAAAAACATTGAATTTGCTTTATTTCTCGAAATGTGTAAAAAAA---TGTTCTG 1673
Query 1670 AACAATGTTTTCTATTTATTATGTCACCAAAAGTCTCCACATGAGCAAACTCCATCACTG 1729
|||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1674 AACAATGTTTTCTA---AT-----CACCAAAAGTCTCCACATGAGCAAACTCCATCACTG 1725
Query 1730 CTAAAGTGATGAAACCGATTTGAATCTCT 1758
|||||||||||||||||||||||||||||
Sbjct 1726 CTAAAGTGATGAAACCGATTTGAATCTCT 1754
> Ahg311880 jgi|Araly1|311880|fgenesh1_pm.C_scaffold_1000660
Length=1197
Score = 547 bits (296), Expect = 9e-155
Identities = 372/409 (91%), Gaps = 4/409 (1%)
Strand=Plus/Plus
Query 675 CGGCCTTGGAGAGCTTTTCTGTTGTATGGGCCTCCTGGAACAGGAAAATCGTATTTGGCT 734
||||| ||| ||||||||||| | || |||||||||||||| || |||||||| ||||||
Sbjct 403 CGGCCATGGCGAGCTTTTCTGCTCTACGGGCCTCCTGGAACTGGTAAATCGTACTTGGCT 462
Query 735 AAGGCTGTTGCCACTGAAGCTGACTCTACCTTTTTTAGCGTGTCTTCATCAGACCTT-GT 793
||||||||||| |||||||| |||||||| ||||| || |||||||||||||| ||| ||
Sbjct 463 AAGGCTGTTGCTACTGAAGCAGACTCTACGTTTTTCAGTGTGTCTTCATCAGA-CTTGGT 521
Query 794 CTCGAAGTGGATGGGTGAAAGTGAGAAGCTAGTATCAAACCTTTTCGAGATGGCCCGTGA 853
|||||||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||
Sbjct 522 CTCGAAGTGGATGGGTGAAAGTGAAAAGCTAGTATCGAACCTTTTTGAGATGGCTCGTGA 581
Query 854 AAGTGCTCCCTCGATTATTTTTGTTGATGAGATAGATTCTTTGTGTGGTAC-ACGTGGAG 912
||||| || || ||||||||||| |||||||||||||||||||||||| | ||||||||
Sbjct 582 GAGTGCACCGTCAATTATTTTTGTCGATGAGATAGATTCTTTGTGTGGT-CAACGTGGAG 640
Query 913 AAGGAAACGAGAGTGAAGCTTCAAGACGTATCAAAACAGAGCTTCTAGTGCAGATGCAGG 972
|||| || ||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 641 AAGGCAATGAGAGTGAAGCTTCAAGACGTATTAAAACAGAGCTTCTTGTGCAGATGCAGG 700
Query 973 GTGTTGGACACAATGATGAGAAAGTACTTGTACTTGCAGCAACCAATACACCCTATGCTC 1032
||||||||||||||||||||||||| |||||||| |||||||| |||||||| |||||||
Sbjct 701 GTGTTGGACACAATGATGAGAAAGTCCTTGTACTGGCAGCAACAAATACACCGTATGCTC 760
Query 1033 TTGATCAGGCTATCCGGCGACGTTTTGACAAGCGTATCTATATTCCTCT 1081
||||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct 761 TTGATCAGGCTATTCGGCGACGTTTTGATAAGCGTATCTATATCCCTCT 809
Score = 311 bits (168), Expect = 1e-83
Identities = 243/280 (87%), Gaps = 2/280 (1%)
Strand=Plus/Plus
Query 189 ATGTACAGCAATTTCAAGGAACAAGCGATCGAGTACGTGAAGCAAGCGGTTCATGAAGAC 248
||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || |||
Sbjct 1 ATGTACAGCAATTTCAAAGAACAAGCGATCGAGTACGTGAAGCAAGCTGTTCAAGAGGAC 60
Query 249 AATGCTGGGAATTACAATAAAGCTTTCCCTCTATACATGAACGCGCTTGAGTACTTCAAA 308
|||||||| || ||||| |||||||||||| | ||||||||||| ||||| |||||||||
Sbjct 61 AATGCTGGTAACTACAACAAAGCTTTCCCTTTGTACATGAACGCTCTTGAATACTTCAAA 120
Query 309 ACTCATCTCAAGTATGAGAAGAACCCTAAGATCAGAGA-AGCTATTACCCAGAAATTCAC 367
|| |||||||| |||||||||||||||||||||||||| | |||| | | | |||||||
Sbjct 121 ACCCATCTCAAATATGAGAAGAACCCTAAGATCAGAGATA-CTATCAGCGACAAATTCAA 179
Query 368 CGAGTATCTCCGTCGTGCTGAGGAGATCCGTGCTGTTCTCGATGAAGGTGGATCGGGTCC 427
||||||| ||| ||||||||||||||| ||||| ||| | ||||||| | ||||||| |
Sbjct 180 CGAGTATATCCTTCGTGCTGAGGAGATTCGTGCGGTTTTAGATGAAGTTCGATCGGGGAC 239
Query 428 AGGATCTAACGGTGATGCAGCCGTCGCAACGAGGCCCAAA 467
||||||||| || || ||||| || || |||| |||||||
Sbjct 240 AGGATCTAATGGCGACGCAGCGGTTGCTACGAAGCCCAAA 279
> Ahg320627 jgi|Araly1|320627|fgenesh1_pm.C_scaffold_4000684
Length=2619
Score = 122 bits (66), Expect = 6e-27
Identities = 66/66 (100%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 1693 TCACCAAAAGTCTCCACATGAGCAAACTCCATCACTGCTAAAGTGATGAAACCGATTTGA 1752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2619 TCACCAAAAGTCTCCACATGAGCAAACTCCATCACTGCTAAAGTGATGAAACCGATTTGA 2560
Query 1753 ATCTCT 1758
||||||
Sbjct 2559 ATCTCT 2554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65972304340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5