BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27670.1
Length=882
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900578 jgi|Araly1|900578|Al_scaffold_0004_1228 1343 0.0
Ahg335602 jgi|Araly1|335602|fgenesh1_pg.C_scaffold_1002167 468 3e-131
Ahg921415 jgi|Araly1|921415|scaffold_102696.1 300 1e-80
Ahg313226 jgi|Araly1|313226|fgenesh1_pm.C_scaffold_1002006 254 1e-66
Ahg921422 jgi|Araly1|921422|scaffold_102703.1 193 2e-48
> Ahg900578 jgi|Araly1|900578|Al_scaffold_0004_1228
Length=879
Score = 1343 bits (727), Expect = 0.0
Identities = 833/884 (94%), Gaps = 7/884 (1%)
Strand=Plus/Plus
Query 1 ATGGGTGGATTTACTGGATTTGGTGGCTTGATCAATCAGAACATTCAACAGCCTCGTAAG 60
|||| || ||||||| |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1 ATGGTTGTATTTACTAGATTTGGTGGCTTGATCAATCAGAGCATTCAACAGCCTCTTAAG 60
Query 61 GCCGCGGCCAAGTCCAAGATACATGAGAATGTTAAATCTGGTTCAGTTTCAGAGAAAGAT 120
||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 61 GCCGCGGCCGAGTCCAAGATACCTGAGAATGTTAAATCTAGTTCAGTTTCAGAGAAAGAT 120
Query 121 ACTAATATTCAGGAACCTTGGTATTGGGATCCTGATGTGGACCCAAAGTTGAAGGCCGAG 180
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 121 ACTAATATTCAGGAACCTTGGTATTGGGATCCTGATGTGGTCCCAAAGTTGAAGGCTGAG 180
Query 181 TACAAGAAAAACCATTCGCATGTGAATAGGCAAGCAAGACTTTGGTCTGGTCCAAATAAC 240
|||||| |||| ||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 181 TACAAG-AAAA--ATTCGCATGTGAATAGGCAAGCAGGACTTTGGTCTGGTCCTAATAAC 237
Query 241 AAGCATCCATGGTATGATGCTCCTGCTACGGTGAAGGTGAAAACAAAAAAGGGTCTTTGC 300
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 238 AAGCATCCATGGTATGATGCTCCTGCTACGGTGAAGGTGAAAAGAAAAAAAGGTCTTTGC 297
Query 301 AATTTGAACATAGAATTCACATTGGGATGGCCTCCTCAATTAGTCTCTGAGATGCTTACT 360
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AATATGAACATAGAATTTACATTGGGATGGCCTCCTCAATTAGTCTCTGAGATGCTTACT 357
Query 361 AATCCAAGAAACATAAATTTCTTCAGATTATTCGATAGGGACTTTCGCCAACGTTTGGAC 420
|||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 358 AATCCAAGAAACCTAAATTTCTTCAGATTATTCGACAGGGAATTTCGCCAACGTTTGGAC 417
Query 421 AACAAATCAACAAAGGTTTTGAAGAAGGACGGACCGCGGCAGATCAC-GAGAGTGaaaaa 479
|||||||||||||||||||||||||| |||||||| |||||||||| || |||||||||
Sbjct 418 AACAAATCAACAAAGGTTTTGAAGAAAGACGGACCAAGGCAGATCACGGA-AGTGAAAAA 476
Query 480 aaCTTTGAGATATAAGCTCCTTGGG-CGCTCTATAGCTATCCCGATACATCTAATCATCG 538
|||||| ||||||||||| || ||| | |||||||||||||| ||||||||||||||||
Sbjct 477 AACTTTTAGATATAAGCTTCTCGGGTTG-TCTATAGCTATCCCTATACATCTAATCATCG 535
Query 539 ATGAAAACCATAAAAACCTAACGGCAAAATATAAGAAAGAGAAAATGATGTACATGAAAG 598
||||||||||| |||| || || ||||||| ||||||| |||||||||||||||||||||
Sbjct 536 ATGAAAACCATCAAAATCTTACTGCAAAATTTAAGAAAAAGAAAATGATGTACATGAAAG 595
Query 599 TGTTTGAGGGTAGATGGAAAGTGGAGCCACTATACGCAGATCAGGAACGCTTATGCAAGT 658
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 596 TGTTTGAGGGTAGCTGGAAAGTGGAGCCACTATACGCAGATCAGGAACGTTTATGCAAGT 655
Query 659 CTAGGTCGCGGATTAATGAAGAAGAGTACAAAAAATGTAGTGACGGAAAAGGAAGGATTG 718
|||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||
Sbjct 656 CTAGGTCGCGGATTAATGGAGAAGAATACAAAAAATGTAGTGGCGGAAAAGGAAGGATTG 715
Query 719 GATCAAAGGTGACAATGGAGCAGATCTTTCAGCCTTGTTCTCTTCTTAATGTGCCACCGA 778
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GATCAAAAGTGACAATGGAGCAGATCTTTCAGCCTTGTTCTCTTCTTAATGTGCCACCGA 775
Query 779 TTTCTTGGTTCATCCGTGAGATCACCATCAAAACAATAAAGAATTTGCTCGAAGATCTTA 838
|||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct 776 TTTCTTGGTTCATCCGTGAGATCACCATAAAAACATTCAAGAATTTGCTCGAAGATCTTA 835
Query 839 GACAATTTGTTATCGACATGCACAAAAATTCAGACCCGGAATGA 882
||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 836 GACAATTTGTTATCGACATGCACAAAAGTTCAGACTCGGAATGA 879
> Ahg335602 jgi|Araly1|335602|fgenesh1_pg.C_scaffold_1002167
Length=795
Score = 468 bits (253), Expect = 3e-131
Identities = 498/613 (81%), Gaps = 29/613 (5%)
Strand=Plus/Plus
Query 241 AAGCATCCATGGTATGATGCTCCTGCTACGGTGAAGGTGAAAACAAAAAAGGGTCTTTGC 300
|||||||||||||||||||| || |||| ||||||||||| ||||||||| |||||||||
Sbjct 169 AAGCATCCATGGTATGATGCACCAGCTAAGGTGAAGGTGACAACAAAAAAAGGTCTTTGC 228
Query 301 AATTTGAACATAGAATTCACATTGGGATGGCCTCCTCAATTAGTCT-CTGAGATGCTT-A 358
|||||||||||||||||| |||||||| ||||||| || ||||| | |||||| || |
Sbjct 229 CATTTGAACATAGAATTCAAATTGGGATTGCCTCCTGAAGCAGTCTAC-GAGATG-TTCA 286
Query 359 CTAATCCAAGA-AACATAAATTTCTTCAGATTATTCGATAGGGACTTTCGCCAACGTTTG 417
||||||||| | ||| | |||||||| | | || | |||| ||||||||||||
Sbjct 287 CTAATCCAA-ACAACTTTCCTTTCTTCA-A--AGAGGACAAGGACGGGCGCCAACGTTTG 342
Query 418 GACAACAAATCAACAAAGGTTTTGAAGAAGGACGGACCGCGGCAGATCACGAGAG-TGaa 476
|| ||||||||||||||||||||||||||||| |||||| |||||| ||| |||| || |
Sbjct 343 GAAAACAAATCAACAAAGGTTTTGAAGAAGGATGGACCGAGGCAGACCAC-AGAGGTGGA 401
Query 477 aaaaaCTTTGAGATATAAGCTC-CTTGGGCGCTCTATAGCTATCCCGATACATCTAATCA 535
|||| ||||| | || || |||||| | ||| || |||||| |||||||| || |
Sbjct 402 AAAAGCTTTGTCCTGGAA-CTTTCTTGGGTGTTCTGGAGATATCCCAATACATCTTATAA 460
Query 536 TCGATGAAAACCATAAAAACCTAACGGCAAAATATAAGA-AAGAGAAAATGATGT-ACAT 593
|| | ||||||||||| || ||||| |||||||||| || || |||||||||| | | ||
Sbjct 461 TCCACGAAAACCATAAGAATCTAACTGCAAAATATACGACAA-AGAAAATGATTTTA-AT 518
Query 594 GAAAGTGTTTGAGGGTAGATGGAAAGTGGAGCCACTA-TACGCAGATCAGGAACGCTTAT 652
||||||||| |||||||| |||||||| |||||| | |||| ||||||||||||||| |
Sbjct 519 GAAAGTGTTCGAGGGTAGCTGGAAAGTTGAGCCAG-ACTACGTAGATCAGGAACGCTTGT 577
Query 653 GCAAGTCTAGGTCGCGGATTAA-T-GAAGAAGAGTACAAAAAATGTAGTGACGGAAAAGG 710
||||| | |||| || | || | ||| |||| ||||||| |||||| | ||| ||||
Sbjct 578 GCAAGCCAAGGTTGCCAAA-AAGTCGAA-AAGAATACAAAATATGTAGCGGTGGACAAGG 635
Query 711 AAG-GATTGGATC-AAAGGTGACAATGGAGCAGATCTTTCAGCCTTGTTCTCTTCTTAAT 768
|| | |||| || |||| | ||||||||||||| |||||||||| |||||||||||||
Sbjct 636 AAAAG-TTGGGTCGAAAGTTT-CAATGGAGCAGATTTTTCAGCCTTCTTCTCTTCTTAAT 693
Query 769 GTGCCACCGATTTCTTGGTTCATCCGTGAGATCACCATCAAAACAATAAAGAATT-TGCT 827
| |||||| |||| ||| |||| ||| ||||||||||| ||| | |||| || ||||
Sbjct 694 CTACCACCGGTTTCATGGATCATTTGTGGGATCACCATCAGAACCACCAAGA-TTCTGCT 752
Query 828 CGAAGATCTTAGA 840
|||||||||||||
Sbjct 753 CGAAGATCTTAGA 765
> Ahg921415 jgi|Araly1|921415|scaffold_102696.1
Length=1048
Score = 300 bits (162), Expect = 1e-80
Identities = 293/354 (83%), Gaps = 17/354 (5%)
Strand=Plus/Plus
Query 208 AGGCAAGCAAGACTTTGGTCT-GGTCCAAATAACAAGCATCCATGGTATGATGCTCCTGC 266
||||||||| |||||||| || ||| || | || ||| ||||||||||||||||||||||
Sbjct 81 AGGCAAGCAGGACTTTGG-CTAGGTACAGAGAAGAAGAATCCATGGTATGATGCTCCTGC 139
Query 267 TACGGTGAAGGTGAAAACAAAAAAGGGTCTTTG-CAATTTGAACATAGAATTCACATTGG 325
|| ||||||||||||||| ||||| ||| |||| | || |||||||| |||| |||||||
Sbjct 140 TAAGGTGAAGGTGAAAACCAAAAATGGTATTTGTC-ATATGAACATAAAATTTACATTGG 198
Query 326 GATG-GCCTCCTCAATTAGTCTCTGAGATGCTTACTAATCCAAGAAACATAA-ATTTCTT 383
|| | |||||||||| ||||| ||||||||| ||||||||||||||||||| | | |||
Sbjct 199 GA-GAGCCTCCTCAAGGAGTCTATGAGATGCTCACTAATCCAAGAAACATAACA-TACTT 256
Query 384 CAGATTATTCGA-TAGGGACTT-TCGCCAACGTTTGGACAACAAATCAACAAAGGTTTTG 441
| |||| || || || | || || ||||| |||| |||||||||||||||||||||
Sbjct 257 C-GATT-TT-GACAAGCG--TTGGCGACAACGCCTGGAAAACAAATCAACAAAGGTTTTG 311
Query 442 AAGAAGGACGGACCGCGGCAGATCACGAGA-GTGaaaaaaaCTTTGAGATATAAGCTCCT 500
|||||||| |||||| ||||||||||| || |||| ||| || |||||| ||| ||||
Sbjct 312 AAGAAGGATGGACCGAGGCAGATCACG-GATGTGAGGAAAGCTCTGAGATGGAAGTTCCT 370
Query 501 TGGGCGCTCTATAGCTATCCCGATACATCTAATCATCGATGAAAACCATAAAAA 554
| | | ||| | |||||||||| |||||||| ||||||||||||||| ||||
Sbjct 371 TTTGTGGTCTGGAACTATCCCGATTCATCTAATTATCGATGAAAACCATCAAAA 424
> Ahg313226 jgi|Araly1|313226|fgenesh1_pm.C_scaffold_1002006
Length=678
Score = 254 bits (137), Expect = 1e-66
Identities = 317/401 (79%), Gaps = 23/401 (6%)
Strand=Plus/Plus
Query 420 CAA-CAAATCAACAAAGGTTTTGAAGAAGGACGGACCGCGGCAGATCACGAGAGTGaaaa 478
||| |||||||| |||||||||||||||||| |||||| |||||||| |||| |||| |
Sbjct 230 CAACCAAATCAAGAAAGGTTTTGAAGAAGGATGGACCGAGGCAGATCGTGAGATTGAAGA 289
Query 479 aaaCTTTGAGATATAAG-C-TCCTTGGGCGCTCTATAGCTATCCCGATACATCTAATCAT 536
|| || || | | | | | | ||| || | ||| || | | |||||||||||||| |
Sbjct 290 AAGCTGTG-GCT-TGGGACTTTCTTTGGTGGTCTGGAGATTTTCCGATACATCTAATTGT 347
Query 537 CGATGAAAACCATAAAA-ACCTAACGGCAAAATATAAGAAAGAGAAAATGATGTACATGA 595
||||| ||| || |||| | || || |||||||||||||||||||||||||||| |||||
Sbjct 348 CGATGTAAA-CAAAAAAGATCTTACAGCAAAATATAAGAAAGAGAAAATGATGTTCATGA 406
Query 596 AAGTGTTT-GAGGGTAGA-TGGAAAGTGGAGCCACTATACGCAGAT-CAGGAACGCTTAT 652
|||| ||| || |||| | |||||| | ||||||||||||| |||| ||| ||||| |
Sbjct 407 AAGT-TTTCGAAGGTA-ACTGGAAAATAGAGCCACTATACGTAGATTCAGTC-CGCTTGT 463
Query 653 GCAAGTC-TA-GGTCGCGGATTAATGAAGAAGAGTACAAAAAATGTAGTGACGGAAAAGG 710
||||| | || || || | | | | |||| ||||||| |||||||| |||| ||||
Sbjct 464 GCAAG-CATAAGGA-GCCTAAGAGTCTACAAGAATACAAAACATGTAGTGGCGGACAAGG 521
Query 711 AAGGATTGGATC-AAAGGTGACAATGGAGCAGATCTTT-CAGCCTTGTTCTC-TTCTTAA 767
|||| ||| ||| |||| | |||||||| || || ||| ||||| | | ||| || ||||
Sbjct 522 AAGGGTTGCATCGAAAG-TAACAATGGACCA-ATATTTTCAGCCATATACTCCTT-TTAA 578
Query 768 TGTGCCACCGATTTCTTGGTTCATCCGTGAGATCACCATCA 808
| ||||||| |||||||||||||| ||||| ||||||||||
Sbjct 579 TCTGCCACCAATTTCTTGGTTCATTCGTGATATCACCATCA 619
> Ahg921422 jgi|Araly1|921422|scaffold_102703.1
Length=808
Score = 193 bits (104), Expect = 2e-48
Identities = 189/230 (82%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 604 GAGGGTAGATGGAAAGTGGAGCCACTATACGCAGA-TCAGGAACGCTTATGCAAGTCTAG 662
|||||||| ||||||||||||||||| | | ||| ||| |||||||| |||||| | |
Sbjct 549 GAGGGTAGCTGGAAAGTGGAGCCACTTTTCATAGATTCA-GAACGCTTGTGCAAG-CAAA 606
Query 663 GT-CGCGGATTAAT-GAAGAAGAGTACAAAAAATGTAGTGACGGAAAAGGAAGGATTGGA 720
| || | | | | ||||||||||||||||||||||| ||| ||||||||||| |
Sbjct 607 TTAAGCCCAAGAGTCG-AGAAGAGTACAAAAAATGTAGTGGGGGACGAGGAAGGATTGCA 665
Query 721 TCAAAGGTGACAATGGAGCAGATCTTTCAGCCTTGTTCTCTTCTTAATGTGCCACCGATT 780
|||||||||||||||||||||||||||||||||| || || ||||||| | || || ||
Sbjct 666 TCAAAGGTGACAATGGAGCAGATCTTTCAGCCTTCTTTTCCTCTTAATCTTCCTCCCTTT 725
Query 781 TCTTGGTTCATCCGTGAGATCACCATCAAAACAATAAAGAATTTGCTCGA 830
|||||| ||||||||| ||||||||||||||| | |||||| | |||||
Sbjct 726 TCTTGGATCATCCGTGGGATCACCATCAAAACCACCAAGAATCTACTCGA 775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32671339869
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5