BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27680.1
Length=1373
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933276 jgi|Araly1|933276|scaffold_401264.1 1808 0.0
Ahg900573 jgi|Araly1|900573|Al_scaffold_0004_1223 1580 0.0
> Ahg933276 jgi|Araly1|933276|scaffold_401264.1
Length=1201
Score = 1808 bits (979), Expect = 0.0
Identities = 1130/1203 (94%), Gaps = 10/1203 (1%)
Strand=Plus/Plus
Query 29 AGAAGCGACAGAGTGAGGCCATGCCTGTGTCCGTACATTCCGTTATCGCCACGAACCTAG 88
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAGCGAGAGAGTGAGGCCATGCCTGTGTCCGTACATTCCGTTATCGCCACGAACCTAG 60
Query 89 CCACTACACTATCATCGAA-----TT-ACCGGAATGTTTCTCGCCGTAGAACT-ATCTCC 141
| |||||| |||||||||| || |||||||||||||||||||| || | | |||
Sbjct 61 CGACTACAGTATCATCGAATCGGTTTCACCGGAATGTTTCTCGCCGTCTAA-TCAGCTCA 119
Query 142 ACCTCTGTGAATTGTTCGGTGGAGATTACGGAGGCTGATCGGTCGGTGAAACTGAAGAAC 201
| ||| ||||| || |||||||||| | ||| |||||||||| |||||| |||||||||
Sbjct 120 AGCTCCGTGAAATGCTCGGTGGAGACGAAGGAAGCTGATCGGTGGGTGAAGCTGAAGAAC 179
Query 202 GGGAACGATTCACTGGAGATATGCAGAGTTCTCAACGGGATGTGGCAAACGAGCGGAGGA 261
|| ||||||||||||||||||||||||||||| || || |||||||||||||| ||||||
Sbjct 180 GGTAACGATTCACTGGAGATATGCAGAGTTCTTAATGGAATGTGGCAAACGAGTGGAGGA 239
Query 262 TGGGGGAAGATTGATCGAAACGACGCCGTTGATTCAATGCTTCGTTACGCCGATGCTGGT 321
||||||| |||||| |||||||||||||||||| |||||||||| |||| |||||||||
Sbjct 240 TGGGGGAGGATTGACCGAAACGACGCCGTTGATGCAATGCTTCGACACGCTGATGCTGGT 299
Query 322 CTCTCTACTTTCGATATGGCTGATCACTATGGTCCTGCTGAAGATCTTTACGGTATTTTT 381
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 300 CTCTCTACTTTCGATATGGCTGATCATTATGGTCCTGCTGAAGATCTTTACGGCATTTTT 359
Query 382 ATCAATAGAGTTCGTCGAGAGCGTCCACCGGAGTACTTGGAGAAGATTAAAGGTTTGACA 441
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 360 ATCAATAGAGTTCGTCGAGAGCGTCCACCGGAGTATTTGGAGAAGATTAAAGGTTTGACA 419
Query 442 AAATGGGTGCCTCCTCCAATAAAGATGACAAGTAGCTATGTTCGTCAGAACATCGATATA 501
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 420 AAATGGGTGCCTCCTCCAATAAAGATGACAAGTAGCTATGTTCGTCAGAACATTGATATA 479
Query 502 TCGAGGAAGAGAATGGATGTGGCTGCTCTTGATATGCTTCAGTTTCACTGGTGGGATTAT 561
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 480 TCGCGGAAGAGAATGGATGTGGCTGCTCTTGATATGCTTCAGTTTCATTGGTGGGATTAT 539
Query 562 GCGAATGACGGCTATCTTGATGCACTGAAACATCTCACAGACTTGAAGGAAGAAGGGAAA 621
|||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||
Sbjct 540 GCGAATGACGGCTATCTTGATGCACTGAAACATCTCACTGACCTGAAAGAAGAAGGGAAA 599
Query 622 ATCAAGACTGTTGCTTTGACTAATTTTGATACAGAGAGACTTCAGAAAATCTTAGAGAAT 681
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 600 ATCAAGACTGTTGCTTTGACAAATTTTGATACAGAGAGACTTCAAAAAATCTTAGAGAAT 659
Query 682 GGAATCCCTGTCGTTAGCAATCAGGTGCAACACTCCATCGTAGACATGCGTCCTCAACAG 741
|||||||| || || |||||||| ||||||||||| || ||||| |||||||||||||||
Sbjct 660 GGAATCCCGGTTGTCAGCAATCAAGTGCAACACTCTATTGTAGATATGCGTCCTCAACAG 719
Query 742 AGAATGGCTCAGCTTTGCGAGCTTACAGGGGTCAAACTTATAACATATGGGACAGTTATG 801
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 720 AGAATGGCTCAGCTTTGCGAGCTTACAGGCGTCAAACTTATAACATATGGGACAGTAATG 779
Query 802 GGTGGTCTCTTGTCAGAGAAGTTTCTTGATACCAATCTAACAATCCCTTTTGCTGGCCCT 861
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GGTGGTCTCCTGTCAGAGAAGTTTCTTGATACCAATCTAACAATCCCTTTTGCTGGCCCT 839
Query 862 CGCTTGAATACTCCATCTCTCCAAAAATACAAAAGGATGGTTGATGCATGGGGAGGGTGG 921
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 840 CGCTTGAATACTCCTTCTCTGCAAAAGTACAAAAGGATGGTTGATGCATGGGGAGGGTGG 899
Query 922 AATCTATTTCAAGGTTTACTTCGAACAATGAAGACCATATCCACAAAACATGGAGTCTCT 981
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 900 AATCTATTTCAAGGTCTACTTCGAACAATGAAGAGCATATCCACAAAACATGGAGTCTCT 959
Query 982 ATACCAACAGTGGCTGTGAGATATGTACTAGATCAGCAAGGAGTTGGTGGATCAATGATT 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ATACCAACAGTGGCTGTGAGATATGTACTAGATCAGCAAGGAGTTGGTGGATCAATGATT 1019
Query 1042 GGAGTGAGACTCGGGTTAGCGGAACACATACAAGACGCAAATGCTATATTCTCATTGGTA 1101
|| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1020 GGGGTGAGGCTCGGGTTAGCGGAACACATACAAGACGCAAACGCTATATTCTCATTGGTA 1079
Query 1102 TTGGATGAAGAAGATGTTAATAGCATACAAGAGGTTACCAAGAAAGGTAAAGATCTTCTC 1161
||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1080 TTGGATGAAGAAGATGTGAATAGCATTCAAGAGGTTACCAAGAAAGGTAAAAATCTTCTC 1139
Query 1162 CAAGTGATTGGTGACTGCGGAGACGAATACCGACGTATATGATGTG-TAGCTATGTACTC 1220
|||||||||||||| || |||||||||||||||||||||||||||| ||| ||| |||||
Sbjct 1140 CAAGTGATTGGTGATTGTGGAGACGAATACCGACGTATATGATGTGGTAG-TATATACTC 1198
Query 1221 TAT 1223
|||
Sbjct 1199 TAT 1201
> Ahg900573 jgi|Araly1|900573|Al_scaffold_0004_1223
Length=1161
Score = 1580 bits (855), Expect = 0.0
Identities = 1064/1165 (91%), Gaps = 14/1165 (1%)
Strand=Plus/Plus
Query 49 ATGCCTG-TGTCCGTACATTCCGTTATCGCCACGAACCTAGCCACTACACTATCATCGAA 107
||||| | |||||||||||||||| ||||||||||||||||| |||||| ||||||| ||
Sbjct 1 ATGCC-GATGTCCGTACATTCCGTCATCGCCACGAACCTAGCGACTACAGTATCATCCAA 59
Query 108 ----TT--ACCGGAATGTTTCTCGCCGTAGAACT-ATCTCCACCTCTGTGAATTGTTCGG 160
|| ||||| ||||||||||||| ||| | ||||| ||| ||||| || |||
Sbjct 60 TTGGTTAAACCGGCGTGTTTCTCGCCGTCGAA-TCGGCTCCAGCTCCGTGAAATGCTCGA 118
Query 161 TGGAGATTACGGAGGCTGATCGGTCGGTGAAACTGAAGAACGGGAACGATTCACTGGAGA 220
||||| ||||| ||||| |||| |||||| ||||||||||||||||||||||||||||
Sbjct 119 CGGAGACGACGGAAGCTGACCGGTGGGTGAAGCTGAAGAACGGGAACGATTCACTGGAGA 178
Query 221 TATGCAGAGTTCTCAACGGGATGTGGCAAACGAGCGGAGGATGGGGGAAGATTGATCGAA 280
||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 179 TATGCAGAGTTCTTAACGGAATGTGGCAAACGAGTGGAGGATGGGGGAAGATTGACCGAA 238
Query 281 ACGACGCCGTTGATTCAATGCTTCGTTACGCCGATGCTGGTCTCTCTACTTTCGATATGG 340
|||||||||| ||| | ||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 239 ACGACGCCGTAGATGCTATGCTCCGATACGCCGATGCTGGTCTCTCTACCTTCGATATGG 298
Query 341 CTGATCA-CTATGGTCCTGCTGAAGATCTTTACGGTATTTTTATCAATAGAGTTCGTCGA 399
|||| || ||||||||| |||||||||||||||| |||||| |||||||||||||||||
Sbjct 299 CTGA-CATTTATGGTCCTTCTGAAGATCTTTACGGCATTTTTGTCAATAGAGTTCGTCGA 357
Query 400 GAGCGTCCACCGGAGTACTTGGAGAAGATTAAAGGTTTGACAAAATGGGTGCCTCCTCCA 459
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 358 GAGCGTCCACCGGAGTACTTGGAGAAGATTAAAGGTTTGACAAAATGGGTTCCTCCTCCA 417
Query 460 AT-AAAGATGACAAGTAGCTATGTTCGTCAGAACATCGATATATCGAGGAAGAGAATGGA 518
| ||| ||||| |||||||||||||| | |||||||| | |||| |||||||||||||
Sbjct 418 GTGAAA-ATGACTCGTAGCTATGTTCGTGAAAACATCGAAAAATCGCGGAAGAGAATGGA 476
Query 519 TGTGGCTGCTCTTGATATGCTTCAGTTTCACTGGTGGGATTATGCGAATGACGGCTATCT 578
||||||| |||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 477 TGTGGCTTCTCTTGATATGCTTCAGTTTCATTGGTGGGATTATGCAAATGACGGTTATCT 536
Query 579 TGATGCACTGAAACATCTCACAGACTTGAAGGAAGAAGGGAAAATCAAGACTGTTGCTTT 638
||||||||||||||||||||| ||| | || |||||||| ||||||||||| ||||| ||
Sbjct 537 TGATGCACTGAAACATCTCACTGACCTAAAAGAAGAAGGTAAAATCAAGACCGTTGCATT 596
Query 639 GACTAATTTTGATACAGAGAGACTTCAGAAAATCTTAGAGAATGGAATCCCTGTCGTTAG 698
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GACAAATTTTGATACAGAGAGACTTCAGAAAATCTTAGAGAATGGAATCCCTGTCGTTAG 656
Query 699 CAATCAGGTGCAACACTCCATCGTAGACATGCGTCCTCAACAGAGAATGGCTCAGCTTTG 758
|||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 657 CAATCAGGTGCAACACTCTATTGTAGACATGCGTCCTCAACAAAGAATGGCTCAGCTTTG 716
Query 759 CGAGCTTACAGGGGTCAAACTTATAACATATGGGACAGTTATGGGTGGTCTCTTGTCAGA 818
|||||| |||| || |||||||||||||||||||| || |||||||||||| |||||||
Sbjct 717 TGAGCTTTCAGGCGTTAAACTTATAACATATGGGACTGTAATGGGTGGTCTCCTGTCAGA 776
Query 819 GAAGTTTCTTGATACCAATCTAACAATCCCTTTTGCTGGCCCTCGCTTGAATACTCCATC 878
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 777 GAAGTTTCTTGATGCTAATCTAACAATCCCTTTTGCTGGCCCTCGCTTGAATACTCCTTC 836
Query 879 TCTCCAAAAATACAAAAGGATGGTTGATGCATGGGGAGGGTGGAATCTATTTCAAGGTTT 938
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 837 TCTCCAAAAGTACAAAAGGATGGTTGATGCATGGGGAGGGTGGAATCTATTCCAAGGTTT 896
Query 939 ACTTCGAACAATGAAGACCATATCCACAAAACATGGAGTCTCTATACCAACAGTGGCTGT 998
||||||||| ||||||| ||| ||||||||||||||||||| || ||||||||||||||
Sbjct 897 ACTTCGAACGATGAAGAGTATAGCCACAAAACATGGAGTCTCGATTCCAACAGTGGCTGT 956
Query 999 GAGATATGTACTAGATCAGCAAGGAGTTGGTGGATCAATGATTGGAGTGAGACTCGGGTT 1058
|||||||||||||||||||| || |||| ||||||||||||||| ||||||||||||||
Sbjct 957 GAGATATGTACTAGATCAGCCTGGGGTTGCTGGATCAATGATTGGGGTGAGACTCGGGTT 1016
Query 1059 AGCGGAACACATACAAGACGCAAATGCTATATTCTCATTGGTATTGGATGAAGAAGATGT 1118
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1017 AGCGGAACACATACAAGACGCAAACGCTATATTCTCATTGGTATTGGATGAAGAAGATGT 1076
Query 1119 TAATAGCATACAAGAGGTTACCAAGAAAGGTAAAGATCTTCTCCAAGTGATTGGTGACTG 1178
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1077 TAATAGCATACAAGAGGTTACCAAGAAAGGAAAAGATCTTCTCCAAGTGATTGGTGATTG 1136
Query 1179 CGGAGACGAATACCGACGTATATGA 1203
||||||||||||||| ||||||||
Sbjct 1137 TGGAGACGAATACCGAAGTATATGA 1161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51389692116
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5