BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G27690.1 Length=1910 Score E Sequences producing significant alignments: (Bits) Value Ahg933275 jgi|Araly1|933275|scaffold_401263.1 2409 0.0 Ahg497398 jgi|Araly1|497398|fgenesh2_kg.345__1__AT2G27690.1 2109 0.0 > Ahg933275 jgi|Araly1|933275|scaffold_401263.1 Length=1537 Score = 2409 bits (1304), Expect = 0.0 Identities = 1454/1528 (95%), Gaps = 3/1528 (0%) Strand=Plus/Plus Query 58 ctcatcaACAATGTTACTAATCATATCATTCACCATCGTCTCCTTCTTCTTCATCATAAT 117 ||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||| Sbjct 11 CTCATCAACAATGTTACTAATCATATCTTTCATCATCGTCTCCTTCTTCTTCTTCATAAT 70 Query 118 ATTCTCACTCTTTCACTTACTCTTCCTTCAAAAACTACGTTACTGCAACTGCGAGATCTG 177 |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 71 ATTCTCACTCTTTCACATACTCTTCCTTCAAAAATTACGTTACTGCAACTGCGAGATCTG 130 Query 178 TCATGCTTATCTCACTTCAAGCTGGAAAAAAGACTTCATCAATCTCAGTGATTGGTACAC 237 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 131 CCATGCTTATCTCACTTCAAGCTGGAGAAAAGACTTCATCAATCTCAGTGATTGGTACAC 190 Query 238 TCATCTTCTCCGGCGGTCTCCGACGTCAACGATCAAAGTACACGTCTTAAACAGCGTTAT 297 ||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||| Sbjct 191 TCATCTTCTCCGGCGATCTCCAACGTCAACGATCAAAGTCCACGTCTTAAACAGTGTTAT 250 Query 298 CACAGCGAATCCATCAAACGTTGAACATATCCTCAAAACCAATTTCCACAATTACCCAAA 357 |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 251 CACAGCGAATCCATCAAACGTTGAACATATCCTCAAAACCCATTTCCACAGTTACCCAAA 310 Query 358 AGGCAAACAATTCTCTGTTATCCTCGGTGATCTTTTAGGCCGTGGAATCTTCAATTCCGA 417 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 311 AGGCAAACAATTCTCCGTTATCCTTGGTGATCTTTTAGGCCGTGGAATCTTCAATTCCGA 370 Query 418 TGGTGACACGTGGCGTTTCCAGAGAAAACTCGCGAGTTTGGAACTTGGAAGTGTTTCTGT 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 371 TGGTGACACGTGGCGTTTCCAGAGAAAACTCGCGAGTTTGGAACTTGGAAGTGTTTCTGT 430 Query 478 AAGAGTTTTCGCTCATGAGATTGTTAAGACCGAGATCGAGACACGTCTTCTTCCGATATT 537 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 431 AAGAGTTTTCGCTCATGAGATTGTTAAGACCGAGATCGAGACACGTCTTCTTCCGATTTT 490 Query 538 GACTTCGTTTTCCGACAATCCTGGTTCTGTTTTGGATCTACAAGATGTGTTTAGAAGATT 597 |||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 491 GACTTCATTCTCCGACAATCCTGGTTCGGTTTTGGATCTACAAGATGTGTTTAGAAGATT 550 Query 598 CTCGTTTGATACGATTAGTAAATTGTCGTTTGGGTTTGACCCAGATTGTCTCCGGTTACC 657 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 551 CTCGTTTGATACGATTAGTAAATTGTCATTTGGGTTTGACCCAGATTGTCTCCGGTTACC 610 Query 658 TTTTCCGATATCGGAATTCGCCGTCGCTTTCGATACGGCGTCGTTGTTATCGGCGAAACG 717 ||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct 611 TTTTCCGATGTCGGAATTCGCCGTCGCTTTCGATACGGCCTCGACGTTATCGGCGAAACG 670 Query 718 AGCTTTAGCTCCGTTTCCTCTGTTATGGAAAACCAAAAGGCTTTTAAGAATTGGTTCTGA 777 |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| Sbjct 671 AGCTTTAGCTCCGTTTCCTCTGTTATGGAAAATCAAAAGGTTTTTAAGAATTGGTTCTGA 730 Query 778 GAAAAAGCTTCAAGAATCTATCAATGTGATAAACCGGTTAGCTGGTGATTTAATCAAGCA 837 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 731 GAAAAAGCTTAAAGAATCGATCAATGTGATAAACCGGTTAGCTGGTGATTTAATCAAGCA 790 Query 838 ACGGAGGTTAACCGGTTTGATGGGTAAAAATGATTTGATTTCTAGATTCATGGCGGTTGT 897 ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| || Sbjct 791 TCGGAGGTTAACCGGTTTAATGGGTAAAAACGATTTGATTTCGAGATTCATGGCGGTGGT 850 Query 898 GGCGGAGGACGATGATGAGTATCTCCGAGACATCGTTGTGAGTTTTCTATTGGCTGGTCG 957 |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 851 AGCGGAGGACGATGATGAGTATCTCCGAGACATCGTTGTGAATTTTCTATTGGCGGGTCG 910 Query 958 GGATACGGTAGCTGCTGGTTTAACCGGATTTTTCTGGTTATTGACCCGTCATCCGGAAGT 1017 ||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||| || Sbjct 911 GGATACGGTTGCTGCTGGTTTAACCGGTTTTTTCTGGTTATTGATGCGTCATCCGGATGT 970 Query 1018 GGAGAACCGGATCCGGGAAGAACTGGACCGGGTTATGGGGACCGGTTTTGACTCAGTCAC 1077 |||||||||||| ||||||||| | |||||||| |||||||||||||||||||| ||||| Sbjct 971 GGAGAACCGGATTCGGGAAGAATTAGACCGGGTGATGGGGACCGGTTTTGACTCGGTCAC 1030 Query 1078 TGCTCGTTGCGATGAAATGAGAGAGATGGATTATTTGCATGCGTCGCTGTACGAGAGCAT 1137 ||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 1031 TGCACGTTGCGATGAAATGAGAGAGATGGATTATTTGCATGCGGCGCTTTACGAGAGCAT 1090 Query 1138 GAGATTGTTTCCGCCGGTTCAATTCGATTCCAAATTCGCTTTAAACGATGACGTTTTGTC 1197 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1091 GAGATTGTTTCCGCCGGTTCAATTCGATTCCAAATTTGCTTTAAACGATGACGTTTTGTC 1150 Query 1198 TGATGGTACATTTGTGAATAGTGGGACTAGAGTCACGTACCATGCTTATGCAATGGGTCG 1257 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 1151 TGATGGTACATTTGTGAAAAGAGGGACTAGAGTCACGTACCATGCTTATGCAATGGGTCG 1210 Query 1258 GATGGACCGGATCTGGGGCCCGGATTACGAAGAGTTTAAACCAGAGAGGTGGTTGGATAA 1317 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 1211 GATGGACCGGATCTGGGGTCCGGATTACGAAGAGTTTAAACCGGAGAGGTGGTTGGATAA 1270 Query 1318 CGAAGGTAAGTTCCGGCCCGAGAATCCGGTTAAGTACCCGGTTTTCCAGGCCGGAGCTAG 1377 |||||| || ||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 1271 CGAAGGAAAATTCCGGCCCGAGAATCCGGTTAAATACCCGGTTTTTCAGGCCGGAGCTAG 1330 Query 1378 GGTTTGTATCGGGAAAGAGATGGCTATCATGGAGATGAAATCCATAG-CTGTGGCAATCA 1436 ||||||| |||||||||| ||||| |||||||||||||||||||||| | |||||||||| Sbjct 1331 GGTTTGTGTCGGGAAAGAAATGGCCATCATGGAGATGAAATCCATAGTC-GTGGCAATCA 1389 Query 1437 TTAGGAGGTTCGAAACACGGGTCGCAAGTCCCGAAACAACCGAGACACTCCGGTTTGCGC 1496 ||||||||||| |||||||| ||||||||| |||| ||||| | |||||||||||||||| Sbjct 1390 TTAGGAGGTTCAAAACACGGCTCGCAAGTCTCGAATCAACCAAAACACTCCGGTTTGCGC 1449 Query 1497 CTGGTTTAACTGCGACGGTTAACGGTGGATTGCCGGTTATGATCCAAGAAAGGAGTTA-G 1555 |||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| | | Sbjct 1450 CTGGTTTAACCGCGACGGTTAATGGTGGATTGCCGGTTATGATCCAAGAGAGGAGTCAAG 1509 Query 1556 ACTCATAAAAGCATTAAGTCAAGATATA 1583 |||||||||||||||||||||||||||| Sbjct 1510 ACTCATAAAAGCATTAAGTCAAGATATA 1537 > Ahg497398 jgi|Araly1|497398|fgenesh2_kg.345__1__AT2G27690.1 Length=1820 Score = 2109 bits (1142), Expect = 0.0 Identities = 1262/1322 (95%), Gaps = 0/1322 (0%) Strand=Plus/Plus Query 57 cctcatcaACAATGTTACTAATCATATCATTCACCATCGTCTCCTTCTTCTTCATCATAA 116 |||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||| Sbjct 27 CCTCATCAACAATGTTACTAATCATATCTTTCATCATCGTCTCCTTCTTCTTCTTCATAA 86 Query 117 TATTCTCACTCTTTCACTTACTCTTCCTTCAAAAACTACGTTACTGCAACTGCGAGATCT 176 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 87 TATTCTCACTCTTTCACATACTCTTCCTTCAAAAATTACGTTACTGCAACTGCGAGATCT 146 Query 177 GTCATGCTTATCTCACTTCAAGCTGGAAAAAAGACTTCATCAATCTCAGTGATTGGTACA 236 | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 147 GCCATGCTTATCTCACTTCAAGCTGGAGAAAAGACTTCATCAATCTCAGTGATTGGTACA 206 Query 237 CTCATCTTCTCCGGCGGTCTCCGACGTCAACGATCAAAGTACACGTCTTAAACAGCGTTA 296 |||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||| Sbjct 207 CTCATCTTCTCCGGCGATCTCCAACGTCAACGATCAAAGTCCACGTCTTAAACAGTGTTA 266 Query 297 TCACAGCGAATCCATCAAACGTTGAACATATCCTCAAAACCAATTTCCACAATTACCCAA 356 ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 267 TCACAGCGAATCCATCAAACGTTGAACATATCCTCAAAACCCATTTCCACAGTTACCCAA 326 Query 357 AAGGCAAACAATTCTCTGTTATCCTCGGTGATCTTTTAGGCCGTGGAATCTTCAATTCCG 416 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 327 AAGGCAAACAATTCTCCGTTATCCTTGGTGATCTTTTAGGCCGTGGAATCTTCAATTCCG 386 Query 417 ATGGTGACACGTGGCGTTTCCAGAGAAAACTCGCGAGTTTGGAACTTGGAAGTGTTTCTG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 387 ATGGTGACACGTGGCGTTTCCAGAGAAAACTCGCGAGTTTGGAACTTGGAAGTGTTTCTG 446 Query 477 TAAGAGTTTTCGCTCATGAGATTGTTAAGACCGAGATCGAGACACGTCTTCTTCCGATAT 536 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 447 TAAGAGTTTTCGCCCATGAGATTGTTAAGACCGAGATCGAGACACGTCTTCTTCCGATTT 506 Query 537 TGACTTCGTTTTCCGACAATCCTGGTTCTGTTTTGGATCTACAAGATGTGTTTAGAAGAT 596 ||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 507 TGACTTCATTCTCCGACAATCCTGGTTCGGTTTTGGATCTACAAGATGTGTTTAGAAGAT 566 Query 597 TCTCGTTTGATACGATTAGTAAATTGTCGTTTGGGTTTGACCCAGATTGTCTCCGGTTAC 656 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 567 TCTCGTTTGATACGATTAGTAAATTGTCATTTGGGTTTGACCCAGATTGTCTCCGGTTAC 626 Query 657 CTTTTCCGATATCGGAATTCGCCGTCGCTTTCGATACGGCGTCGTTGTTATCGGCGAAAC 716 |||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 627 CTTTTCCGATGTCGGAATTCGCCGTCGCTTTCGATACGGCCTCGACGTTATCGGCGAAAC 686 Query 717 GAGCTTTAGCTCCGTTTCCTCTGTTATGGAAAACCAAAAGGCTTTTAAGAATTGGTTCTG 776 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 687 GAGCTTTAGCTCCGTTTCCTCTGTTATGGAAAATCAAAAGGCTTTTAAGAATTGGTTCTG 746 Query 777 AGAAAAAGCTTCAAGAATCTATCAATGTGATAAACCGGTTAGCTGGTGATTTAATCAAGC 836 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 747 AGAAAAAGCTTAAAGAATCGATCAATGTGATAAACCGGTTAGCTGGTGATTTAATCAAGC 806 Query 837 AACGGAGGTTAACCGGTTTGATGGGTAAAAATGATTTGATTTCTAGATTCATGGCGGTTG 896 | ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| | Sbjct 807 ATCGGAGGTTAACCGGTTTAATGGGTAAAAACGATTTGATTTCGAGATTCATGGCGGTGG 866 Query 897 TGGCGGAGGACGATGATGAGTATCTCCGAGACATCGTTGTGAGTTTTCTATTGGCTGGTC 956 | |||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||| Sbjct 867 TAGCGGAGGACGATGACGAGTATCTCCGAGACATCGTTGTGAATTTTCTATTGGCGGGTC 926 Query 957 GGGATACGGTAGCTGCTGGTTTAACCGGATTTTTCTGGTTATTGACCCGTCATCCGGAAG 1016 |||||||||| || |||||||||||||| |||||||||||||||| ||||||||||| | Sbjct 927 GGGATACGGTTGCAGCTGGTTTAACCGGTTTTTTCTGGTTATTGATGCGTCATCCGGATG 986 Query 1017 TGGAGAACCGGATCCGGGAAGAACTGGACCGGGTTATGGGGACCGGTTTTGACTCAGTCA 1076 ||||||||||||| ||||||||| | |||||||| |||||||||||||||||||| |||| Sbjct 987 TGGAGAACCGGATTCGGGAAGAATTAGACCGGGTGATGGGGACCGGTTTTGACTCGGTCA 1046 Query 1077 CTGCTCGTTGCGATGAAATGAGAGAGATGGATTATTTGCATGCGTCGCTGTACGAGAGCA 1136 |||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct 1047 CTGCACGTTGCGATGAAATGAGAGAGATGGATTATTTGCATGCGGCGCTTTACGAGAGCA 1106 Query 1137 TGAGATTGTTTCCGCCGGTTCAATTCGATTCCAAATTCGCTTTAAACGATGACGTTTTGT 1196 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1107 TGAGATTGTTTCCGCCGGTTCAATTCGATTCCAAATTTGCTTTAAACGATGACGTTTTGT 1166 Query 1197 CTGATGGTACATTTGTGAATAGTGGGACTAGAGTCACGTACCATGCTTATGCAATGGGTC 1256 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 1167 CTGATGGTACATTTGTGAAAAGAGGGACTAGAGTCACGTACCATGCTTATGCAATGGGTC 1226 Query 1257 GGATGGACCGGATCTGGGGCCCGGATTACGAAGAGTTTAAACCAGAGAGGTGGTTGGATA 1316 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 1227 GGATGGACCGGATCTGGGGTCCGGATTACGAAGAGTTTAAACCGGAGAGGTGGTTGGATA 1286 Query 1317 ACGAAGGTAAGTTCCGGCCCGAGAATCCGGTTAAGTACCCGGTTTTCCAGGCCGGAGCTA 1376 |||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1287 GCGAAGGAAAATTCCGGCCCGAGAATCCGGTTAAGTACCCGGTTTTTCAGGCCGGAGCTA 1346 Query 1377 GG 1378 || Sbjct 1347 GG 1348 Score = 593 bits (321), Expect = 1e-168 Identities = 427/475 (90%), Gaps = 19/475 (4%) Strand=Plus/Plus Query 1411 GATGAAATCCATAGCTGTGGCAATCATTAGGAGGTTCGAAACACGGGTCGCAAGTCCCGA 1470 ||||||||||||||| |||||||||| |||||||||| |||||||| ||||||||| ||| Sbjct 1348 GATGAAATCCATAGCCGTGGCAATCAATAGGAGGTTCAAAACACGGCTCGCAAGTCTCGA 1407 Query 1471 AACAACCGAGACACTCCGGTTTGCGCCTGGTTTAACTGCGACGGTTAACGGTGGATTGCC 1530 | ||||| | |||||||||||||||||||||||||| ||||| ||||| ||||||||||| Sbjct 1408 ATCAACCAAAACACTCCGGTTTGCGCCTGGTTTAACCGCGACAGTTAATGGTGGATTGCC 1467 Query 1531 GGTTATGATCCAAGAAAGGAGT-TAGACTCATAAAAGCATTAAGTCAAGATATATAATAA 1589 |||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 1468 GGTTATAATCCAAGAAAGGAGTCAAGACTCATAAAAGCATTAAGTCAAGATATAAAATAA 1527 Query 1590 TACTTAATGAAAACCATAGATAGAGTCTTTGTTCTCTAACTGACCAATTATTGTTAACAT 1649 ||||| | ||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 1528 TACTTTA-CAAAACCATAGATAGAGTCTGTGTTCTCTAACCGACCAATTATTGTTAACAT 1586 Query 1650 GCAAACACACTTGTTGACAACAAT-TATGTGTACCATTATCTCTTATTTAATTTAGCAAA 1708 ||||||||||||||| |||| || |||||||| |||||||||||||||||||||||||| Sbjct 1587 GCAAACACACTTGTTAACAA-TATCTATGTGTATCATTATCTCTTATTTAATTTAGCAAA 1645 Query 1709 GCCAAGTGGGTCTTAAGTTCTTTGGAATCTTAATTGTATAATGCTTAAAGTTAATATGAT 1768 |||||||||||||||| |||| ||||||| |||||||||||||||||| |||||||||| Sbjct 1646 GCCAAGTGGGTCTTAATTTCTC-GGAATCTCAATTGTATAATGCTTAAATTTAATATGAT 1704 Query 1769 TACGTAATTGACCCAAGAAAGGCGTTCAGATTTATGGTAAACTTGAATAGTTTACTTAAG 1828 |||| ||||||||||| || |||||||||||||||| |||| |||||||||||| || Sbjct 1705 TACGCAATTGACCCAA-AA-GGCGTTCAGATTTATG-TAAATTTGAATAGTTTA-TT--- 1757 Query 1829 AAGTTAAGAGGATGGTTTATGATAACATTGCTT-ATTTCACACGAATGTGTGTAT 1882 ||| |||||||||||||||||| ||||||| ||| |||||||| |||| ||| Sbjct 1758 ---TTA-GAGGATGGTTTATGATAAGATTGCTTGATT-CACACGAA-GTGTATAT 1806 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71762021580 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5