BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27690.1
Length=1910
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933275 jgi|Araly1|933275|scaffold_401263.1 2409 0.0
Ahg497398 jgi|Araly1|497398|fgenesh2_kg.345__1__AT2G27690.1 2109 0.0
> Ahg933275 jgi|Araly1|933275|scaffold_401263.1
Length=1537
Score = 2409 bits (1304), Expect = 0.0
Identities = 1454/1528 (95%), Gaps = 3/1528 (0%)
Strand=Plus/Plus
Query 58 ctcatcaACAATGTTACTAATCATATCATTCACCATCGTCTCCTTCTTCTTCATCATAAT 117
||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||
Sbjct 11 CTCATCAACAATGTTACTAATCATATCTTTCATCATCGTCTCCTTCTTCTTCTTCATAAT 70
Query 118 ATTCTCACTCTTTCACTTACTCTTCCTTCAAAAACTACGTTACTGCAACTGCGAGATCTG 177
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 71 ATTCTCACTCTTTCACATACTCTTCCTTCAAAAATTACGTTACTGCAACTGCGAGATCTG 130
Query 178 TCATGCTTATCTCACTTCAAGCTGGAAAAAAGACTTCATCAATCTCAGTGATTGGTACAC 237
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 131 CCATGCTTATCTCACTTCAAGCTGGAGAAAAGACTTCATCAATCTCAGTGATTGGTACAC 190
Query 238 TCATCTTCTCCGGCGGTCTCCGACGTCAACGATCAAAGTACACGTCTTAAACAGCGTTAT 297
||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 191 TCATCTTCTCCGGCGATCTCCAACGTCAACGATCAAAGTCCACGTCTTAAACAGTGTTAT 250
Query 298 CACAGCGAATCCATCAAACGTTGAACATATCCTCAAAACCAATTTCCACAATTACCCAAA 357
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 251 CACAGCGAATCCATCAAACGTTGAACATATCCTCAAAACCCATTTCCACAGTTACCCAAA 310
Query 358 AGGCAAACAATTCTCTGTTATCCTCGGTGATCTTTTAGGCCGTGGAATCTTCAATTCCGA 417
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 311 AGGCAAACAATTCTCCGTTATCCTTGGTGATCTTTTAGGCCGTGGAATCTTCAATTCCGA 370
Query 418 TGGTGACACGTGGCGTTTCCAGAGAAAACTCGCGAGTTTGGAACTTGGAAGTGTTTCTGT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TGGTGACACGTGGCGTTTCCAGAGAAAACTCGCGAGTTTGGAACTTGGAAGTGTTTCTGT 430
Query 478 AAGAGTTTTCGCTCATGAGATTGTTAAGACCGAGATCGAGACACGTCTTCTTCCGATATT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 431 AAGAGTTTTCGCTCATGAGATTGTTAAGACCGAGATCGAGACACGTCTTCTTCCGATTTT 490
Query 538 GACTTCGTTTTCCGACAATCCTGGTTCTGTTTTGGATCTACAAGATGTGTTTAGAAGATT 597
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 491 GACTTCATTCTCCGACAATCCTGGTTCGGTTTTGGATCTACAAGATGTGTTTAGAAGATT 550
Query 598 CTCGTTTGATACGATTAGTAAATTGTCGTTTGGGTTTGACCCAGATTGTCTCCGGTTACC 657
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 551 CTCGTTTGATACGATTAGTAAATTGTCATTTGGGTTTGACCCAGATTGTCTCCGGTTACC 610
Query 658 TTTTCCGATATCGGAATTCGCCGTCGCTTTCGATACGGCGTCGTTGTTATCGGCGAAACG 717
||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 611 TTTTCCGATGTCGGAATTCGCCGTCGCTTTCGATACGGCCTCGACGTTATCGGCGAAACG 670
Query 718 AGCTTTAGCTCCGTTTCCTCTGTTATGGAAAACCAAAAGGCTTTTAAGAATTGGTTCTGA 777
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 671 AGCTTTAGCTCCGTTTCCTCTGTTATGGAAAATCAAAAGGTTTTTAAGAATTGGTTCTGA 730
Query 778 GAAAAAGCTTCAAGAATCTATCAATGTGATAAACCGGTTAGCTGGTGATTTAATCAAGCA 837
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 731 GAAAAAGCTTAAAGAATCGATCAATGTGATAAACCGGTTAGCTGGTGATTTAATCAAGCA 790
Query 838 ACGGAGGTTAACCGGTTTGATGGGTAAAAATGATTTGATTTCTAGATTCATGGCGGTTGT 897
||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 791 TCGGAGGTTAACCGGTTTAATGGGTAAAAACGATTTGATTTCGAGATTCATGGCGGTGGT 850
Query 898 GGCGGAGGACGATGATGAGTATCTCCGAGACATCGTTGTGAGTTTTCTATTGGCTGGTCG 957
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 851 AGCGGAGGACGATGATGAGTATCTCCGAGACATCGTTGTGAATTTTCTATTGGCGGGTCG 910
Query 958 GGATACGGTAGCTGCTGGTTTAACCGGATTTTTCTGGTTATTGACCCGTCATCCGGAAGT 1017
||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||| ||
Sbjct 911 GGATACGGTTGCTGCTGGTTTAACCGGTTTTTTCTGGTTATTGATGCGTCATCCGGATGT 970
Query 1018 GGAGAACCGGATCCGGGAAGAACTGGACCGGGTTATGGGGACCGGTTTTGACTCAGTCAC 1077
|||||||||||| ||||||||| | |||||||| |||||||||||||||||||| |||||
Sbjct 971 GGAGAACCGGATTCGGGAAGAATTAGACCGGGTGATGGGGACCGGTTTTGACTCGGTCAC 1030
Query 1078 TGCTCGTTGCGATGAAATGAGAGAGATGGATTATTTGCATGCGTCGCTGTACGAGAGCAT 1137
||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1031 TGCACGTTGCGATGAAATGAGAGAGATGGATTATTTGCATGCGGCGCTTTACGAGAGCAT 1090
Query 1138 GAGATTGTTTCCGCCGGTTCAATTCGATTCCAAATTCGCTTTAAACGATGACGTTTTGTC 1197
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1091 GAGATTGTTTCCGCCGGTTCAATTCGATTCCAAATTTGCTTTAAACGATGACGTTTTGTC 1150
Query 1198 TGATGGTACATTTGTGAATAGTGGGACTAGAGTCACGTACCATGCTTATGCAATGGGTCG 1257
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1151 TGATGGTACATTTGTGAAAAGAGGGACTAGAGTCACGTACCATGCTTATGCAATGGGTCG 1210
Query 1258 GATGGACCGGATCTGGGGCCCGGATTACGAAGAGTTTAAACCAGAGAGGTGGTTGGATAA 1317
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1211 GATGGACCGGATCTGGGGTCCGGATTACGAAGAGTTTAAACCGGAGAGGTGGTTGGATAA 1270
Query 1318 CGAAGGTAAGTTCCGGCCCGAGAATCCGGTTAAGTACCCGGTTTTCCAGGCCGGAGCTAG 1377
|||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1271 CGAAGGAAAATTCCGGCCCGAGAATCCGGTTAAATACCCGGTTTTTCAGGCCGGAGCTAG 1330
Query 1378 GGTTTGTATCGGGAAAGAGATGGCTATCATGGAGATGAAATCCATAG-CTGTGGCAATCA 1436
||||||| |||||||||| ||||| |||||||||||||||||||||| | ||||||||||
Sbjct 1331 GGTTTGTGTCGGGAAAGAAATGGCCATCATGGAGATGAAATCCATAGTC-GTGGCAATCA 1389
Query 1437 TTAGGAGGTTCGAAACACGGGTCGCAAGTCCCGAAACAACCGAGACACTCCGGTTTGCGC 1496
||||||||||| |||||||| ||||||||| |||| ||||| | ||||||||||||||||
Sbjct 1390 TTAGGAGGTTCAAAACACGGCTCGCAAGTCTCGAATCAACCAAAACACTCCGGTTTGCGC 1449
Query 1497 CTGGTTTAACTGCGACGGTTAACGGTGGATTGCCGGTTATGATCCAAGAAAGGAGTTA-G 1555
|||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| | |
Sbjct 1450 CTGGTTTAACCGCGACGGTTAATGGTGGATTGCCGGTTATGATCCAAGAGAGGAGTCAAG 1509
Query 1556 ACTCATAAAAGCATTAAGTCAAGATATA 1583
||||||||||||||||||||||||||||
Sbjct 1510 ACTCATAAAAGCATTAAGTCAAGATATA 1537
> Ahg497398 jgi|Araly1|497398|fgenesh2_kg.345__1__AT2G27690.1
Length=1820
Score = 2109 bits (1142), Expect = 0.0
Identities = 1262/1322 (95%), Gaps = 0/1322 (0%)
Strand=Plus/Plus
Query 57 cctcatcaACAATGTTACTAATCATATCATTCACCATCGTCTCCTTCTTCTTCATCATAA 116
|||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||
Sbjct 27 CCTCATCAACAATGTTACTAATCATATCTTTCATCATCGTCTCCTTCTTCTTCTTCATAA 86
Query 117 TATTCTCACTCTTTCACTTACTCTTCCTTCAAAAACTACGTTACTGCAACTGCGAGATCT 176
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 87 TATTCTCACTCTTTCACATACTCTTCCTTCAAAAATTACGTTACTGCAACTGCGAGATCT 146
Query 177 GTCATGCTTATCTCACTTCAAGCTGGAAAAAAGACTTCATCAATCTCAGTGATTGGTACA 236
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 147 GCCATGCTTATCTCACTTCAAGCTGGAGAAAAGACTTCATCAATCTCAGTGATTGGTACA 206
Query 237 CTCATCTTCTCCGGCGGTCTCCGACGTCAACGATCAAAGTACACGTCTTAAACAGCGTTA 296
|||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 207 CTCATCTTCTCCGGCGATCTCCAACGTCAACGATCAAAGTCCACGTCTTAAACAGTGTTA 266
Query 297 TCACAGCGAATCCATCAAACGTTGAACATATCCTCAAAACCAATTTCCACAATTACCCAA 356
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 267 TCACAGCGAATCCATCAAACGTTGAACATATCCTCAAAACCCATTTCCACAGTTACCCAA 326
Query 357 AAGGCAAACAATTCTCTGTTATCCTCGGTGATCTTTTAGGCCGTGGAATCTTCAATTCCG 416
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 327 AAGGCAAACAATTCTCCGTTATCCTTGGTGATCTTTTAGGCCGTGGAATCTTCAATTCCG 386
Query 417 ATGGTGACACGTGGCGTTTCCAGAGAAAACTCGCGAGTTTGGAACTTGGAAGTGTTTCTG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 ATGGTGACACGTGGCGTTTCCAGAGAAAACTCGCGAGTTTGGAACTTGGAAGTGTTTCTG 446
Query 477 TAAGAGTTTTCGCTCATGAGATTGTTAAGACCGAGATCGAGACACGTCTTCTTCCGATAT 536
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 447 TAAGAGTTTTCGCCCATGAGATTGTTAAGACCGAGATCGAGACACGTCTTCTTCCGATTT 506
Query 537 TGACTTCGTTTTCCGACAATCCTGGTTCTGTTTTGGATCTACAAGATGTGTTTAGAAGAT 596
||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 507 TGACTTCATTCTCCGACAATCCTGGTTCGGTTTTGGATCTACAAGATGTGTTTAGAAGAT 566
Query 597 TCTCGTTTGATACGATTAGTAAATTGTCGTTTGGGTTTGACCCAGATTGTCTCCGGTTAC 656
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 567 TCTCGTTTGATACGATTAGTAAATTGTCATTTGGGTTTGACCCAGATTGTCTCCGGTTAC 626
Query 657 CTTTTCCGATATCGGAATTCGCCGTCGCTTTCGATACGGCGTCGTTGTTATCGGCGAAAC 716
|||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 627 CTTTTCCGATGTCGGAATTCGCCGTCGCTTTCGATACGGCCTCGACGTTATCGGCGAAAC 686
Query 717 GAGCTTTAGCTCCGTTTCCTCTGTTATGGAAAACCAAAAGGCTTTTAAGAATTGGTTCTG 776
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 687 GAGCTTTAGCTCCGTTTCCTCTGTTATGGAAAATCAAAAGGCTTTTAAGAATTGGTTCTG 746
Query 777 AGAAAAAGCTTCAAGAATCTATCAATGTGATAAACCGGTTAGCTGGTGATTTAATCAAGC 836
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 747 AGAAAAAGCTTAAAGAATCGATCAATGTGATAAACCGGTTAGCTGGTGATTTAATCAAGC 806
Query 837 AACGGAGGTTAACCGGTTTGATGGGTAAAAATGATTTGATTTCTAGATTCATGGCGGTTG 896
| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |
Sbjct 807 ATCGGAGGTTAACCGGTTTAATGGGTAAAAACGATTTGATTTCGAGATTCATGGCGGTGG 866
Query 897 TGGCGGAGGACGATGATGAGTATCTCCGAGACATCGTTGTGAGTTTTCTATTGGCTGGTC 956
| |||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 867 TAGCGGAGGACGATGACGAGTATCTCCGAGACATCGTTGTGAATTTTCTATTGGCGGGTC 926
Query 957 GGGATACGGTAGCTGCTGGTTTAACCGGATTTTTCTGGTTATTGACCCGTCATCCGGAAG 1016
|||||||||| || |||||||||||||| |||||||||||||||| ||||||||||| |
Sbjct 927 GGGATACGGTTGCAGCTGGTTTAACCGGTTTTTTCTGGTTATTGATGCGTCATCCGGATG 986
Query 1017 TGGAGAACCGGATCCGGGAAGAACTGGACCGGGTTATGGGGACCGGTTTTGACTCAGTCA 1076
||||||||||||| ||||||||| | |||||||| |||||||||||||||||||| ||||
Sbjct 987 TGGAGAACCGGATTCGGGAAGAATTAGACCGGGTGATGGGGACCGGTTTTGACTCGGTCA 1046
Query 1077 CTGCTCGTTGCGATGAAATGAGAGAGATGGATTATTTGCATGCGTCGCTGTACGAGAGCA 1136
|||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1047 CTGCACGTTGCGATGAAATGAGAGAGATGGATTATTTGCATGCGGCGCTTTACGAGAGCA 1106
Query 1137 TGAGATTGTTTCCGCCGGTTCAATTCGATTCCAAATTCGCTTTAAACGATGACGTTTTGT 1196
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1107 TGAGATTGTTTCCGCCGGTTCAATTCGATTCCAAATTTGCTTTAAACGATGACGTTTTGT 1166
Query 1197 CTGATGGTACATTTGTGAATAGTGGGACTAGAGTCACGTACCATGCTTATGCAATGGGTC 1256
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1167 CTGATGGTACATTTGTGAAAAGAGGGACTAGAGTCACGTACCATGCTTATGCAATGGGTC 1226
Query 1257 GGATGGACCGGATCTGGGGCCCGGATTACGAAGAGTTTAAACCAGAGAGGTGGTTGGATA 1316
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1227 GGATGGACCGGATCTGGGGTCCGGATTACGAAGAGTTTAAACCGGAGAGGTGGTTGGATA 1286
Query 1317 ACGAAGGTAAGTTCCGGCCCGAGAATCCGGTTAAGTACCCGGTTTTCCAGGCCGGAGCTA 1376
|||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1287 GCGAAGGAAAATTCCGGCCCGAGAATCCGGTTAAGTACCCGGTTTTTCAGGCCGGAGCTA 1346
Query 1377 GG 1378
||
Sbjct 1347 GG 1348
Score = 593 bits (321), Expect = 1e-168
Identities = 427/475 (90%), Gaps = 19/475 (4%)
Strand=Plus/Plus
Query 1411 GATGAAATCCATAGCTGTGGCAATCATTAGGAGGTTCGAAACACGGGTCGCAAGTCCCGA 1470
||||||||||||||| |||||||||| |||||||||| |||||||| ||||||||| |||
Sbjct 1348 GATGAAATCCATAGCCGTGGCAATCAATAGGAGGTTCAAAACACGGCTCGCAAGTCTCGA 1407
Query 1471 AACAACCGAGACACTCCGGTTTGCGCCTGGTTTAACTGCGACGGTTAACGGTGGATTGCC 1530
| ||||| | |||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 1408 ATCAACCAAAACACTCCGGTTTGCGCCTGGTTTAACCGCGACAGTTAATGGTGGATTGCC 1467
Query 1531 GGTTATGATCCAAGAAAGGAGT-TAGACTCATAAAAGCATTAAGTCAAGATATATAATAA 1589
|||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1468 GGTTATAATCCAAGAAAGGAGTCAAGACTCATAAAAGCATTAAGTCAAGATATAAAATAA 1527
Query 1590 TACTTAATGAAAACCATAGATAGAGTCTTTGTTCTCTAACTGACCAATTATTGTTAACAT 1649
||||| | ||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1528 TACTTTA-CAAAACCATAGATAGAGTCTGTGTTCTCTAACCGACCAATTATTGTTAACAT 1586
Query 1650 GCAAACACACTTGTTGACAACAAT-TATGTGTACCATTATCTCTTATTTAATTTAGCAAA 1708
||||||||||||||| |||| || |||||||| ||||||||||||||||||||||||||
Sbjct 1587 GCAAACACACTTGTTAACAA-TATCTATGTGTATCATTATCTCTTATTTAATTTAGCAAA 1645
Query 1709 GCCAAGTGGGTCTTAAGTTCTTTGGAATCTTAATTGTATAATGCTTAAAGTTAATATGAT 1768
|||||||||||||||| |||| ||||||| |||||||||||||||||| ||||||||||
Sbjct 1646 GCCAAGTGGGTCTTAATTTCTC-GGAATCTCAATTGTATAATGCTTAAATTTAATATGAT 1704
Query 1769 TACGTAATTGACCCAAGAAAGGCGTTCAGATTTATGGTAAACTTGAATAGTTTACTTAAG 1828
|||| ||||||||||| || |||||||||||||||| |||| |||||||||||| ||
Sbjct 1705 TACGCAATTGACCCAA-AA-GGCGTTCAGATTTATG-TAAATTTGAATAGTTTA-TT--- 1757
Query 1829 AAGTTAAGAGGATGGTTTATGATAACATTGCTT-ATTTCACACGAATGTGTGTAT 1882
||| |||||||||||||||||| ||||||| ||| |||||||| |||| |||
Sbjct 1758 ---TTA-GAGGATGGTTTATGATAAGATTGCTTGATT-CACACGAA-GTGTATAT 1806
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71762021580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5