BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27700.2
Length=1443
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900570 jgi|Araly1|900570|Al_scaffold_0004_1220 1868 0.0
Ahg927067 jgi|Araly1|927067|scaffold_202628.1 1550 0.0
Ahg476840 jgi|Araly1|476840|fgenesh2_kg.2__1970__AT1G76810.1 955 0.0
Ahg313019 jgi|Araly1|313019|fgenesh1_pm.C_scaffold_1001799 942 0.0
> Ahg900570 jgi|Araly1|900570|Al_scaffold_0004_1220
Length=1383
Score = 1868 bits (1011), Expect = 0.0
Identities = 1241/1352 (92%), Gaps = 16/1352 (1%)
Strand=Plus/Plus
Query 93 AGACAAA-GTCCGTTCTCCCATTTGCTGTATGATGGGTCATATCGATACTGGTAAAACAA 151
||| ||| ||||| ||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 33 AGA-AAATGTCCGCTCTCCCATTTGTTGCATCATGGGTCATATCGATACTGGTAAAACAA 91
Query 152 AGCTGTTAGATTACATCACA-G--GAAATGTACAAGAAGGCGAGGCTGGAGGTACCACTC 208
|| |||| |||||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 92 AGATGTTGGATTACATCATAGGAAGAAATGTACAAGAAGGCGAGGCTGGAGGTACCACTC 151
Query 209 AGAAGATGGGTGCAACATATCTCTCAGCGAGAAACATCCTAGAGAAGACCATGGAACTGA 268
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 152 AAAAGATTGGTGCAACATATCTCTCAGCGAGAAACATCCTAGAGAAGACCATGGAACTGA 211
Query 269 AATCCGATACAAAACTTAAGGTGCCACGTCCACTGTTTATCGATACACCTGGTTACGAGT 328
|||||||| ||||||| || |||||| ||| | |||||||||||||||||||||| ||||
Sbjct 212 AATCCGATGCAAAACTCAATGTGCCAGGTCTATTGTTTATCGATACACCTGGTTATGAGT 271
Query 329 TCTACACAAATCTTCGCTCAAGAGGCTTAGGTTTGTGTGACTTTGCAATTTTGGTTGTTG 388
||| || |||||||| |||||||| ||| |||||||||||||||||||||||| ||||
Sbjct 272 TCTTCATGAATCTTCGTTCAAGAGGTTTAACTTTGTGTGACTTTGCAATTTTGGTGGTTG 331
Query 389 ACATAATGCATGGGTTAGAGCCACAAACTATAGAATGTCTAAATCTTCTGAGAATGAAGA 448
| ||||||||||||| || ||||||||||||||||||||||||||| ||| || || ||
Sbjct 332 ATGTAATGCATGGGTTTGAACCACAAACTATAGAATGTCTAAATCTTTTGAAAAAGAGGA 391
Query 449 ATACGGAGTTCATTATTGCATTGAATAAGGTGGATAGGCTATATGGATGGAGAA-TATGT 507
||| ||||||||||||||||||| |||||||||||||||||||||||||| || | |||
Sbjct 392 ATATAGAGTTCATTATTGCATTGACTAAGGTGGATAGGCTATATGGATGGAAAACT-TGT 450
Query 508 GAAAATGCTCCTATCTTGGAGGCGATGAAGCAACAAACTAAAGATGTTATAAATGAATTT 567
|| |||||||||||| || |||| ||||||||||||||||| ||||||| ||||||||||
Sbjct 451 GAGAATGCTCCTATCATGAAGGCAATGAAGCAACAAACTAACGATGTTAGAAATGAATTT 510
Query 568 AACATGAGGCTGAATGAGATTATAAACCAGTTTAAGGAGCAAGGACTCAACAGTGAGCTT 627
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 511 AACATGAGGCTGAATGAGATTATAGACCAGTTTAAGGAGCAAGGACTCAACACTGAGCTT 570
Query 628 TATTACAAGAATAAAGAAATGGGAGAAACTTTTAGTATTGTTCCTACTTGTGCTATTAGT 687
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 571 TATTACAAGAATAAAGAAATGAGAGAAACTTTTAGTATTGTTCCTACTAGTGCTATTAGT 630
Query 688 GGGGAAGGGATCCCAGATCTATTGTTGTTGTTGGTTCAATTGACTCAGAAAACAATGGTT 747
|| ||||| ||| ||||||| |||||||| |||||||||||| ||||||||||| |||||
Sbjct 631 GGAGAAGGCATCTCAGATCTCTTGTTGTTATTGGTTCAATTGTCTCAGAAAACAGTGGTT 690
Query 748 GAGAAACTAATTACATATGTTGACAAAGTGCAGCAGTGTACTGTCCTAGAGGTCAAAGTT 807
| |||| | ||||||||||||||||||| |||||||| |||||| |||||||||||
Sbjct 691 G-GAAA--ACTTACATATGTTGACAAAGT---GCAGTGTATTGTCCTTGAGGTCAAAGTC 744
Query 808 ATGGAAGGCTATGGTACAACGATTGATGTTGTGTTGGTAAATGGTGAACTCCATGAAGGT 867
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 745 ATGGAAGGATATGGTACAACGATTGATGTTGTGTTGGTAAACGGTGAACTCCATGAAGGT 804
Query 868 GGTCAAATCGTCGTTTGTGGTCTACAGGGACCTATTGTCACAACGATTAGAGCATTACTG 927
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 GATCAAATCGTCGTTTGTGGTCTACAGGGACCTATTGTCACAACGATTAGAGCATTACTG 864
Query 928 ACTCCTCATCCAATAAAGGAGTTGCATGTGAATGGTAATCATGTACATCACGAAGTAA-T 986
|||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| |
Sbjct 865 ACTCCTCATCCAATCAAGGAGTTACATGTGAATGGTAATCATGTGCATCACGAAGTAATT 924
Query 987 AAAGGCTGCAGAGTGTATCAATATTATTGCCAAGGACCTTGAACATGTAATTGTTGGTAC 1046
| | |||||| |||||||||||||||||||| ||| ||||||||| | ||||||||||||
Sbjct 925 ACA-GCTGCACAGTGTATCAATATTATTGCCCAGGGCCTTGAACACGCAATTGTTGGTAC 983
Query 1047 TGCCCTGCATGTCGTTGGACCTGATGATGACATCGAAGCAATTAAGGAGTTGGTTATGGA 1106
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 CACCTTGCATGTGGTTGGACCTGATGATGACATCGAAGCAATTAAGGAGTTGGTTATGGA 1043
Query 1107 AGATGTAAACTCAGTTTTGAGCAGGATTGACAAAAGTGGTGAAGGAGTTTATATACAAGC 1166
|||| || | ||| |||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1044 AGATATAGAGTCAATTTTGAGCAGGATTGACACAAGTGGTGAAGGAGTTTATGTACAAGC 1103
Query 1167 GTCTACATTAGGTTCTTTGGAAGCATTGCTTGAATTCTTGAAGTCCCCAGCTGTAAAGTT 1226
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 GTCTACATTAGGGTCCTTGGAAGCATTGCTTGAATTCTTGAAGTCCCCAGCTGTAAAGTT 1163
Query 1227 ACCTGTTGGTGGTATTGGCATAGGGCCTGTGCAAAAGAAGGATGTAATGAAGGCGGGAGT 1286
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1164 ACCTGTTGGTGGTATTGGCATAGGGCCTGTGCAAAAGAAGGATATAATGAAGGCGGGAGT 1223
Query 1287 GATGCTCGAGAGGAAAAAGGAATTTGCTACAATTTTGGCTTTAGACGTGGAAGTGACTAC 1346
|||||||||||| |||||||||||||||||||| |||||||| |||||| ||||||||||
Sbjct 1224 GATGCTCGAGAGAAAAAAGGAATTTGCTACAATATTGGCTTTTGACGTGAAAGTGACTAC 1283
Query 1347 AGAGGCTCGTGAACTTGCTGACGAAATGGAAGTTAAAATCTTCTGCTCTGATATCATGTA 1406
|||||||||||||||||| |||||||||| |||||||||||| ||| ||||||| |||||
Sbjct 1284 AGAGGCTCGTGAACTTGCAGACGAAATGGGAGTTAAAATCTTATGCGCTGATATAATGTA 1343
Query 1407 TCATTTATTCGATCAGTATCAGGCATATATAT 1438
||||||||| ||||||| | | ||||| ||||
Sbjct 1344 TCATTTATTTGATCAGTTT-ATGCATACATAT 1374
Score = 65.8 bits (35), Expect = 9e-10
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 1 ATGGATCTGAAGAAGCCGAGTGCTCGAGGTGGAGA 35
|||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATCTGAAGAAGCCGAGTGCTCGAGGTGGAGA 35
> Ahg927067 jgi|Araly1|927067|scaffold_202628.1
Length=3799
Score = 1550 bits (839), Expect = 0.0
Identities = 1171/1330 (88%), Gaps = 27/1330 (2%)
Strand=Plus/Plus
Query 101 TCCGTTCTCCCATTTGCTGTATGATGGGTCATATCGATACTGGTAAAACAAAGCTGTTAG 160
|||||||| ||||||||||| ||||||||| | ||||||||||||||||||||||| |
Sbjct 2002 TCCGTTCTATTATTTGCTGTATCATGGGTCATGTTGATACTGGTAAAACAAAGCTGTTGG 2061
Query 161 ATTACATCACAGG---AAATGTACAAGAAGGCGAGGCTGGAGGTACCACTCAGAAGATGG 217
||| ||||| ||| ||||||||| ||||| ||||||||||||| |||||| |||| |
Sbjct 2062 ATTGCATCAGAGGAACAAATGTACAGGAAGGTGAGGCTGGAGGTATTACTCAGCAGATTG 2121
Query 218 GTGCAACATATCTCTCAGC-GAGAAACATCCTAGAGAAGACCATGGAACTGAAATCCGAT 276
||||||||||| || | || || |||||||| ||||| ||||| |||||||||| |||||
Sbjct 2122 GTGCAACATATTTCCCTGCGGA-AAACATCCGAGAGAGGACCAGGGAACTGAAAGCCGAT 2180
Query 277 ACAAAACTTAAGGTGCCACGTCCACT-GTTTATCGATACACCTGGTTACGAGTTCTACAC 335
||||| ||||||||||| ||| | | | |||||||||||||||| | |||| || |||
Sbjct 2181 GCAAAAATTAAGGTGCCAGGTCTATTAG-TTATCGATACACCTGGCCATGAGTCCTTCAC 2239
Query 336 AAATCTTCGCTCAAGAGGCTT-AGGTTTGTGTGACTTTGCAATTTTGGTTGTTGACATAA 394
||||| || |||||||| || | ||||||||||| ||||||||||||| ||||||||||
Sbjct 2240 GAATCTGCGGTCAAGAGG-TTCAAGTTTGTGTGACCTTGCAATTTTGGTGGTTGACATAA 2298
Query 395 TGCATGGGTTAGAGCCACAAACTATAGAATGTCTAAATCTTCTGAGAATGAAGAATACGG 454
|||||||||||||||||||||| ||||||| |||||||||| ||||||||| |||||| |
Sbjct 2299 TGCATGGGTTAGAGCCACAAACCATAGAATCTCTAAATCTTTTGAGAATGAGGAATACAG 2358
Query 455 AGTTCATTATTGCATTGAATAAGGTGGATAGGCTATATGGATGGAGAATATGTGAA-AAT 513
|||||||| |||||||||||||||||||| || |||||||||| || ||| || |||
Sbjct 2359 AGTTCATTGTTGCATTGAATAAGGTGGATTTACTCTATGGATGGAAAACATG-CAAGAAT 2417
Query 514 GCTCCTATCTTGGAGGCGATGAAGCAACAAACTAAAGATGTTA-TAAATGAATTTAACAT 572
||||||||| || |||| |||||||| |||||||||||||||| | |||||||||||| |
Sbjct 2418 GCTCCTATCGTGAAGGCAATGAAGCAGCAAACTAAAGATGTTACT-AATGAATTTAACTT 2476
Query 573 GAGGCTGA-ATGAGATTATAAACCAGTTTAAGGAGCAAGGACTCAACAGTGAGCTTTATT 631
|||||||| | |||||| | ||| || |||||||||||||| |||| |||||||| |
Sbjct 2477 GAGGCTGACCCG-GATTATTACCCAATTCAAGGAGCAAGGACTTAACACCGAGCTTTACT 2535
Query 632 ACAAGAATAAAGAAATGGGAGAAACTTTTAGTATTGTTCCTACTTGTGCTATTAGTGGGG 691
||||||||||||||||||| |||||||| ||| ||||||||||| |||||| || ||||
Sbjct 2536 ACAAGAATAAAGAAATGGGCGAAACTTTCAGTCTTGTTCCTACTAGTGCTAAAAGCGGGG 2595
Query 692 AAGGGATCCCAGATCTATTGTTGTTGTTGGTTCAATTGACTCAGAAAACAATGGTTGAGA 751
|||||||||||||||| ||| ||||||||||||||| | |||||||||||||||||||||
Sbjct 2596 AAGGGATCCCAGATCTCTTGCTGTTGTTGGTTCAATGGGCTCAGAAAACAATGGTTGAGA 2655
Query 752 AACTAATTACATATGTTGACAAAGTGCAGCAGTGTACTGTCCTAGAGGTCAAAGTTATGG 811
||| |||| ||||||||||||||| | ||||||||||||| |||||||||||||| |
Sbjct 2656 AAC---TTACTTATGTTGACAAAGTG-A--AGTGTACTGTCCTTGAGGTCAAAGTTATTG 2709
Query 812 AAGGCTATGGTACAACGATTGATGTTGTGTTGGTAAATGGTGAACTCCATGAAGGTGGTC 871
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 2710 AAGGCCATGGTACAACGATTGATGTTGTGTTGGTAAACGGTGAACTCCATGAAGGTGATC 2769
Query 872 AAATCGTCGTTTGT-GGTCTACAGGGACCTATTGTCACAACGATTAGAGCATTACTGACT 930
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2770 AAATCGTCGTTTGTGGGT-TACAGGGACCTATTGTCACAACGATTAGAGCATTACTGACT 2828
Query 931 CCTCATCCAATAAAGGAGTTGCATGTGAATGGTAATCATGTACATCACGAAGTAATAAAG 990
||||||||||| |||||||| | ||||| |||| | || | ||| || ||| |||||||
Sbjct 2829 CCTCATCCAATGAAGGAGTTACGGGTGAAGGGTACTTATCTGCATTACAAAGAAATAAAG 2888
Query 991 GCTGCAGAGTGTATCAATATTATTGCCAAGGACCTTGAACATGTAATTGTTGGTACTGCC 1050
|||||| || | ||||| |||| ||| ||| ||||||||| | ||||| ||||||| ||
Sbjct 2889 GCTGCACAGGGCATCAAAATTACCGCCCAGGGCCTTGAACACGCAATTGCTGGTACTTCC 2948
Query 1051 CTGCATGTCGTTGGACCTGATGATGACATCGAAGCAATTAAGGAGTTGGTTATGGAAGAT 1110
|||||||| ||||||||||||||||||||||| ||||||||||||| || ||||||||||
Sbjct 2949 CTGCATGTGGTTGGACCTGATGATGACATCGAGGCAATTAAGGAGTCGGCTATGGAAGAT 3008
Query 1111 GTA-AACTCAGTTTTGAGCAGGATTGACAAAAGTGGTGAAGGAGTTTATATACAAGCGTC 1169
| || ||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 3009 ATGGAA-TCAGTTTTGAGCAGGATTGACAATAGTGGTGAAGGAGTTTATGTACAAGCGTC 3067
Query 1170 TACATTAGGTTCTTTGGAAGCATTGCTTGAATTCTTGAAGTCCCCAGCTGTAAAGT-TAC 1228
||||||||| || || |||||||||||||||||||||||||||||||||||||| | |||
Sbjct 3068 TACATTAGGGTCATTAGAAGCATTGCTTGAATTCTTGAAGTCCCCAGCTGTAAA-TATAC 3126
Query 1229 CTGTTGGTGGTATTGGCATAGGGCCTGTGCAAAAGAAGGATGTAATGAAGGCGGGAGTGA 1288
|||| ||||||||||||||||||||||||| ||||||||| |||||||||| |||||||
Sbjct 3127 CTGTCAGTGGTATTGGCATAGGGCCTGTGCATAAGAAGGATATAATGAAGGCTGGAGTGA 3186
Query 1289 TGCTCGAGAGGAAAAAGGAATTTGCTACAATTTTGGCTTTAGACGTGGAAGTGACTACAG 1348
||||||||| ||||||||||| |||||||||||||||||| |||||| ||||||||||||
Sbjct 3187 TGCTCGAGAAGAAAAAGGAATATGCTACAATTTTGGCTTTTGACGTGAAAGTGACTACAG 3246
Query 1349 AGGCTCGTGAACTTGCTGACGAAATGGAAGTTAAAATCTTCTGCTCTGATATCATGTATC 1408
|||||||||||||||| |||||||||| ||| |||||||||||| |||||||||| ||||
Sbjct 3247 AGGCTCGTGAACTTGCAGACGAAATGGGAGTAAAAATCTTCTGCGCTGATATCATCTATC 3306
Query 1409 ATTTATTCGA 1418
||||||||||
Sbjct 3307 ATTTATTCGA 3316
> Ahg476840 jgi|Araly1|476840|fgenesh2_kg.2__1970__AT1G76810.1
Length=4134
Score = 955 bits (517), Expect = 0.0
Identities = 765/882 (87%), Gaps = 28/882 (3%)
Strand=Plus/Plus
Query 91 GAAGACAAA-GTCCGTTCTCCCATTTGCTGTATGATGGGTCATATCGATACTGGTAAAAC 149
||||| ||| |||| |||||||||||||| || ||||||||| || |||||||||||||
Sbjct 1961 GAAGA-AAATCTCCGCTCTCCCATTTGCTGCATCATGGGTCATGTCAATACTGGTAAAAC 2019
Query 150 AAAGCTGTTAGATTACATCACAGG--A-AATGTACAAGAAGGCGAGGCTGGAGGTACCAC 206
||||||||| |||| ||||| ||| | |||||||| ||||||||||||||||||| ||
Sbjct 2020 AAAGCTGTTGGATTGCATCAGAGGAAACAATGTACAGGAAGGCGAGGCTGGAGGTATTAC 2079
Query 207 TCAGAAGATGGGTGCAACATATCTCTCAGC-GAGAAACATCCTAGAGAAGACCATGGAAC 265
|||| |||| |||||||||||| || |||| ||| ||||||| ||||| ||||| |||||
Sbjct 2080 TCAGCAGATTGGTGCAACATATTTCCCAGCGGAG-AACATCCGAGAGAGGACCAGGGAAC 2138
Query 266 TGAAATCCGATACAAAACTTAAGGTGCCACGTCCACTGTTTATCGATACACCTGGTTACG 325
||||| ||||| ||||||| || |||||| ||| | || |||| ||||||||||| |||
Sbjct 2139 TGAAAGCCGATGCAAAACTCAAAGTGCCAGGTCTATTGGTTATTGATACACCTGGCCACG 2198
Query 326 AGTTCTACACAAATCTTCGCTCAAGAGGCTT-AGGTTTGTGTGACTTTGCAATTTTGGTT 384
||| || ||| ||||| || |||||||| || | ||||||||||| |||| ||||||||
Sbjct 2199 AGTCCTTCACGAATCTGCGGTCAAGAGG-TTCAAGTTTGTGTGACCTTGCGATTTTGGTG 2257
Query 385 GTTGACATAATGCATGGGTTAGAGCCACAAACTATAGAATGTCTAAATCTTCTGAGAATG 444
|||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||
Sbjct 2258 GTTGACATAATGCATGGGTTAGAGCCACAAACCATAGAATCTCTAAATCTTTTGAGAATG 2317
Query 445 AAGAATACGGAGTTCATTATTGCATTGAATAAGGTGGATAGGCTATATGGATGGAGAATA 504
| |||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 2318 AGGAATACAGAGTTCATTATTGCATTGAATAAGGTGGATAGGCTATATGGATGGAAAACA 2377
Query 505 TGTGAA-AATGCTCCTATCTTGGAGGCGATGAAGCAACAA-ACTAAAGATGTTATAAATG 562
|| || |||||||||||| || |||| |||||||| ||| | |||||||||| |||||
Sbjct 2378 TG-CAAGAATGCTCCTATCGTGAAGGCAATGAAGCAGCAAGA-AAAAGATGTTACAAATG 2435
Query 563 AATTTAACATGAGGCTGAATGAGATTATAAACCAGTTTAAGGAGCAAGGACTCAACAGTG 622
||||||| |||||||||| ||| |||| ||||||||| || ||||||||||||||| ||
Sbjct 2436 AATTTAAAATGAGGCTGACTGATATTAAAAACCAGTTCCAGAAGCAAGGACTCAACACTG 2495
Query 623 AGCTTTATTACAAGAATAAAGAAATGGGAGAAACTTTTAGTATTGTTCCTACTTGTGCTA 682
||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||
Sbjct 2496 AGCTTTATTACAAGAATAAAGAAATGGGAGAAACTTTCAGTCTTGTTCCTACTAGTGCTA 2555
Query 683 TTAGTGGGGAAGGGATCCCAGATCTATTGTTGTTGTTGGTTCAATTGACTCAGAAAACAA 742
|||| ||||||||| |||||||||| ||| |||| |||||||||| | ||||||||||||
Sbjct 2556 TTAGCGGGGAAGGGGTCCCAGATCTCTTGCTGTTATTGGTTCAATGGGCTCAGAAAACAA 2615
Query 743 TGGTTGAGAAACTAATTACATATGTTGACAAAGTGCAGCAGTGTACTGTCCTAGAGGTCA 802
||||||||||||| | |||||||||||| |||||||| ||||||||||| |||||||
Sbjct 2616 TGGTTGAGAAACT--T-ACATATGTTGACGAAGTGCAG---TGTACTGTCCTTGAGGTCA 2669
Query 803 AAGTTATGGAAGGCTATGGTACAACGATTGATGTTGTGTTGGTAAATGGTGAACTCCATG 862
||||||| |||||| |||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 2670 AAGTTATTGAAGGCCATGGTACAACAATTGATGTTGTGTTGGTAAACGGTGAACTCCATG 2729
Query 863 AAGGTGGTCAAATCGTCGTTTGTGGTCTACAGGGACCTATTGTCACAACGATTAGAGCAT 922
|||||| |||||||||||||||||| ||||||| | || | || | | |||||
Sbjct 2730 AAGGTGATCAAATCGTCGTTTGTGGGCTACAGGCAAAGCTT---AGAA--A--A-AGCAT 2781
Query 923 TACTGACTCCTCATCCAATAAAGGAGTTGCATGTGAATGGTA 964
||||||||||||||||||| |||||||| | ||||| ||||
Sbjct 2782 TACTGACTCCTCATCCAATGAAGGAGTTACGGGTGAA-GGTA 2822
Score = 580 bits (314), Expect = 7e-165
Identities = 404/448 (90%), Gaps = 4/448 (1%)
Strand=Plus/Plus
Query 973 CATCACGAAGTAATAAAGGCTGCAGAGTGTATCAATATTATTGCCA-AGGACCTTGAACA 1031
||| || ||| ||||||||||||| || ||||||| ||| || || ||| |||||||||
Sbjct 2888 CATTACAAAGAAATAAAGGCTGCACAGGGTATCAAGATTGCTG-CACAGGGCCTTGAACA 2946
Query 1032 TGTAATTGTTGGTACTGCCCTGCATGTCGTTGGACCTGATGATGACATCGAAGCAATTAA 1091
| ||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 2947 CGCAATTGCTGGTACTGCCCTGCATGTGGTTGGACCTGATGATGACATCGAGGCAATTAA 3006
Query 1092 GGAGTTGGTTATGGAAGATGT-AAACTCAGTTTTGAGCAGGATTGACAAAAGTGGTGAAG 1150
||||| || |||||||||| | || || ||||||||||||||||||||| |||||||||
Sbjct 3007 GGAGTCGGCTATGGAAGATATGGAA-TCGGTTTTGAGCAGGATTGACAAAGGTGGTGAAG 3065
Query 1151 GAGTTTATATACAAGCGTCTACATTAGGTTCTTTGGAAGCATTGCTTGAATTCTTGAAGT 1210
|||||||| ||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 3066 GAGTTTATGTACAAGCGTCTACATTAGGGTCATTAGAAGCATTGCTTGAATTCTTGAAGT 3125
Query 1211 CCCCAGCTGTAAAGTTACCTGTTGGTGGTATTGGCATAGGGCCTGTGCAAAAGAAGGATG 1270
|||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 3126 CCCCAGCTGTAAAGATACCTGTCAGTGGTATTGGCATAGGGCCTGTGCATAAGAAGGATA 3185
Query 1271 TAATGAAGGCGGGAGTGATGCTCGAGAGGAAAAAGGAATTTGCTACAATTTTGGCTTTAG 1330
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
Sbjct 3186 TAATGAAGGCGGGAGTGATGCTCGAGAAGAAAAAGGAATTTGCTACAATATTGGCTTTTG 3245
Query 1331 ACGTGGAAGTGACTACAGAGGCTCGTGAACTTGCTGACGAAATGGAAGTTAAAATCTTCT 1390
| ||| ||||||||||||| |||||||||||||| |||||||||| ||| ||||||||||
Sbjct 3246 ATGTGAAAGTGACTACAGAAGCTCGTGAACTTGCAGACGAAATGGGAGTAAAAATCTTCT 3305
Query 1391 GCTCTGATATCATGTATCATTTATTCGA 1418
|| |||||||||| ||||||||||||||
Sbjct 3306 GCGCTGATATCATCTATCATTTATTCGA 3333
Score = 63.9 bits (34), Expect = 3e-09
Identities = 42/46 (91%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 1 ATGGATCTGAAGAAGCCGAGTGCTCGAGGTGGAGATGATAAGCAGC 46
|||| || ||||||||||||||||||||||||||||| | ||||||
Sbjct 23 ATGGGTCGGAAGAAGCCGAGTGCTCGAGGTGGAGATGCTGAGCAGC 68
> Ahg313019 jgi|Araly1|313019|fgenesh1_pm.C_scaffold_1001799
Length=4290
Score = 942 bits (510), Expect = 0.0
Identities = 1082/1349 (80%), Gaps = 75/1349 (6%)
Strand=Plus/Plus
Query 97 AAAGTC--CGTTCTCCCATTTGCTGTATGATGGGTCATATCGATACTGGTAAAACAAAGC 154
|||||| || |||||||||||||| || ||||||||| | ||| |||||||||||||||
Sbjct 1130 AAAGTCTTCGCTCTCCCATTTGCTGCATCATGGGTCATGTTGATTCTGGTAAAACAAAGC 1189
Query 155 TGTTAGATTACATCACAGG---AAATGTACAAGAAGGCGAGGCTGGAGGTACCACTCAGA 211
| || |||| ||||| ||| |||||| || ||||| || |||||||||| ||||| |
Sbjct 1190 TATTGGATTGCATCAGAGGAACAAATGTTCAGGAAGGTGAAGCTGGAGGTATTACTCA-A 1248
Query 212 -AGATGGGTGCAACATATCTCTCAGCGAG-AAACATCC-TAGAGAAGACCATGGAACTGA 268
|||| |||||||||||| || | || || |||||||| | |||| ||||| ||| | |
Sbjct 1249 CAGATTGGTGCAACATATTTCCCTGC-AGAAAACATCCGT-GAGAGGACCAAGGAGTTAA 1306
Query 269 AATCCGATACAAAACTTAAGGTGCCACGTCCACTGTTTATCGATACACCTGGTTACGAGT 328
|| | ||| | ||||| ||||||||| ||| | || |||||||||||||||| | |||
Sbjct 1307 AAGCTGATGCTAAACTCAAGGTGCCAGGTCTATTGGTTATCGATACACCTGGACATGAG- 1365
Query 329 TC-TACACAAATCTTCGCTCAAGAGGCT-TAGGTTTGTGTGACTTTGCAATTTTGGTTGT 386
|| | ||||||||| || ||||| || | | |||||||||| |||||||| | || ||
Sbjct 1366 TCATTCACAAATCTGCGGTCAAG-GGGTGCAAATTTGTGTGACCTTGCAATTCTAGTGGT 1424
Query 387 TGACATAATGCATGGGT-TAGAGCCACAAA-CTATAGAATGTCTAAATCTTCTGAGAATG 444
||||||||||| | ||| |||||||||||| || |||||| ||| |||||| |||||| |
Sbjct 1425 TGACATAATGCGT-GGTCTAGAGCCACAAACCT-TAGAATCTCTGAATCTTTTGAGAA-G 1481
Query 445 AA-GAATACGGAGTTCATTATTGCATTGAATAAGGTGGATAGGCTATAT-GGATGGAGAA 502
|| |||| |||||||| |||| |||||||||||||||||||||||| || |||| ||
Sbjct 1482 AAGGAATGTAAAGTTCATTGTTGCCTTGAATAAGGTGGATAGGCTATATAGG-TGGA-AA 1539
Query 503 TATGTGAA-AATGCTCCTATCTTGGAGGCGATGAAGCAACAAACT-A-AAGATGTTATAA 559
| || |||||||| | || || | |||||||||| || | | || |||| |
Sbjct 1540 AAAAACAAGGATGCTCCTCTAATGAAGACAATGAAGCAAC-AATTGAGAA-ATGTGGTTG 1597
Query 560 ATGAATTTAACATGAGGCTGA-AT-GAGATTATAAA-CCAGTT-TAAGGAGCAAGGACTC 615
|||| |||||||||| | | || || ||| ||| |||||| || || |||||||||
Sbjct 1598 ATGAGTTTAACATGA-AATTACATCAAG-TTA-AAACCCAGTTCCAA-GAACAAGGACTC 1653
Query 616 AACAGTGA-GCTTTATTACAAGAATAAAGAAATGGGAGAAACTTTTAGTATTGTTCCTAC 674
|| ||| | ||||||||||||||| | |||||||||||||||| | |||||||| |||||
Sbjct 1654 AATAGT-ATGCTTTATTACAAGAACAGAGAAATGGGAGAAACTATCAGTATTGTACCTAC 1712
Query 675 TTGTGCTATTAGTGGGGAAGGGATCCCAGATCTATTGTTGTTGTTGGTTCAATTGACTCA 734
| ||||||||||||||||||||||||||||||| ||| ||||||| ||||||| | ||||
Sbjct 1713 TAGTGCTATTAGTGGGGAAGGGATCCCAGATCTTTTGCTGTTGTTAGTTCAATGGGCTCA 1772
Query 735 GAAAACAATGGTTGAGAAACTAATTACATATGTTGACAAAGTGCAGCAGTGTACTGTCCT 794
|||||||||||| |||||||| | |||| ||||||||||||||| ||||| |||||
Sbjct 1773 GAAAACAATGGTGGAGAAACTCA---CATACGTTGACAAAGTGCAG---TGTACCGTCCT 1826
Query 795 AGAGGTCAAAGTTATGGAAGGCTATGGTACAAC-GATTGATGTTGTGTTGGTAAATGGTG 853
|||||||||||||| |||||| |||||| || | |||||||||| ||||| || ||||
Sbjct 1827 TGAGGTCAAAGTTATTGAAGGCCATGGTATTACAG-TTGATGTTGTTTTGGTCAACGGTG 1885
Query 854 AACTCCATGAAGGTGGTCAAATCGTCGTTTGTGG-TCTACAGGGACCTATTGTCACAACG 912
||| | |||| ||| ||||||| | |||||||| || ||||||||| ||||| |||||
Sbjct 1886 TACTTCGTGAAAGTGATCAAATCATTGTTTGTGGGTC-ACAGGGACCAATTGTAACAACT 1944
Query 913 ATTAGAGCATTACTGACTCCTCATCCAATAAAGGAGTTGCATGTGAATGGTA---ATCAT 969
|||||| ||||| |||||||| |||| || || ||| || ||||| |||| || ||
Sbjct 1945 ATTAGATCATTATTGACTCCTTATCCTATGAACGAGACGCGGGTGAAGGGTACCTAT-AT 2003
Query 970 GT-ACATCACGAAGTAATAAAGGCTGCAG-AGTGTATCAATATTATTGC-CAAGGACCTT 1026
| ||| || || | |||||||||||| | || ||||||| ||| || || || ||||
Sbjct 2004 GGCACA-CA-GA-GAAATAAAGGCTGC-GCAGGGTATCAAAATTGCAGCACAGGG-CCTT 2058
Query 1027 GAACATGTAATTGTTGGTACTGCCCTGCATGTCG-TTGGACCTGATGATGACATCGAAGC 1085
||||| | |||| |||||||||| ||||||| | |||| ||| |||| ||||| ||||
Sbjct 2059 GAACACGCCATTGCTGGTACTGCCTTGCATGT-GATTGGGCCTAATGAGGACATGGAAG- 2116
Query 1086 AATT-AAGGAGT-TGGTTATGGAAGATGTA-AACTCAGTTTTGAGCAGGATTGACAAAAG 1142
|| ||| | || | ||||||||| | || |||||| ||| | | |||||||||||
Sbjct 2117 AAGCCAAGAAAAATG-TCATGGAAGATATTGAA-TCAGTTATGAACCGCATTGACAAAAG 2174
Query 1143 TGGTGAAGGAGTTTATATACAAGCGTCTACATTAGGTTCTTTGGAAGCATTGCTTGAATT 1202
|||||||||||||||| ||||||||||||||||||| || |||||||||||||| || ||
Sbjct 2175 TGGTGAAGGAGTTTATGTACAAGCGTCTACATTAGGGTCCTTGGAAGCATTGCTCGAGTT 2234
Query 1203 CTTGAAGTCCCCAGCTGTAAAGTTACCTGTTGGTGGTATTGGCATAGGGCCTGTGCAAAA 1262
|||||||||| ||| |||||| ||||||| |||||| ||||||||| |||||||| ||
Sbjct 2235 CTTGAAGTCCTCAGATGTAAAAATACCTGTCAGTGGTAATGGCATAGGACCTGTGCATAA 2294
Query 1263 GAAGGATGTAATGAAGGC-GGGAGTGATGCTCGAGAGGAAA-AAGGAATTTGCTACAATT 1320
||||||| | |||||||| ||| || ||||| |||| |||| ||| | ||||| || |||
Sbjct 2295 GAAGGATATCATGAAGGCCGGG-GTAATGCTAGAGAAGAAAGAAG-AGTTTGCAACGATT 2352
Query 1321 TTGGC-TTTAGACGTGGAAGTGACTACAGAGGCTCGTGAACTTGCTGACGAAATGGAAGT 1379
||||| ||| || ||| || | ||| |||| |||||||||||||| ||| |||||| |||
Sbjct 2353 TTGGCCTTT-GATGTGAAAATAACTGCAGAAGCTCGTGAACTTGCAGACAAAATGGGAGT 2411
Query 1380 TAAAATCTTCTGCTCTGATATCATGTATC 1408
|||||||||||| ||||| ||| ||||
Sbjct 2412 AAAAATCTTCTGCGATGATACCATCTATC 2440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53973877165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5