BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27710.1
Length=755
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900568 jgi|Araly1|900568|Al_scaffold_0004_1218 479 1e-134
Ahg900567 jgi|Araly1|900567|Al_scaffold_0004_1217 424 6e-118
Ahg900569 jgi|Araly1|900569|Al_scaffold_0004_1219 246 1e-64
> Ahg900568 jgi|Araly1|900568|Al_scaffold_0004_1218
Length=345
Score = 479 bits (259), Expect = 1e-134
Identities = 320/349 (92%), Gaps = 5/349 (1%)
Strand=Plus/Plus
Query 211 ATGAAGGTTGTTGCCGCATACTTGCTCGCTGTTTTGAGCGGAAAAGCTTCACCAACCAGT 270
||||||||||| || || | |||||||| || |||||||| |||||||| |||| |||
Sbjct 1 ATGAAGGTTGTCGCTGCGTTTTTGCTCGCCGTCTTGAGCGGGAAAGCTTCCCCAAGTAGT 60
Query 271 GCCGATATCAAGACTATCCTTGGATCAGTTGGTGCTGAGACAGAGGATTCTCAGATTGAG 330
| ||||||||||||||| ||||||||||||||||||||| |||| ||| |||||||||||
Sbjct 61 GGCGATATCAAGACTATTCTTGGATCAGTTGGTGCTGAGTCAGATGATGCTCAGATTGAG 120
Query 331 CTTTTGTTGAAGGAAGTGAAAGGAAAAGATTTGGCTGA-GTTGATTGCTGCTGGAAGGGA 389
||||||||||||||||||||||| |||||||||||||| ||| |||||| ||||||||||
Sbjct 121 CTTTTGTTGAAGGAAGTGAAAGGGAAAGATTTGGCTGAGGTT-ATTGCTTCTGGAAGGGA 179
Query 390 GAAGTTAGCTTCAGTGCCGTCTGGTGGCGGAGGTGGTGTTGCGGTTGCTTCTGCTACATC 449
||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||
Sbjct 180 GAAGTTAGCTTCAGTGCCGTCTGGTGGTGGTGGTGGTGTTGCGGTTGCTTCTGCTCCATC 239
Query 450 TGGAGGTGGAGGAGGTGGTGGTGCTTCTGCTGCTGAGTCCaagaaagaagagaagaagga 509
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 240 T---GGTGGAGGAGGTGGTGGTGCTCCTGCTGCTGAGTCCAAGAAAGAAGAGAAGAAAGA 296
Query 510 agaaaaggaagaaTCCGATGATGACATGGGTTTCAGTCTATTCGAGTAA 558
||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AGAGAAGGAAGAATCCGATGATGACATGGGTTTCAGTCTATTCGAGTAA 345
> Ahg900567 jgi|Araly1|900567|Al_scaffold_0004_1217
Length=339
Score = 424 bits (229), Expect = 6e-118
Identities = 310/348 (89%), Gaps = 9/348 (3%)
Strand=Plus/Plus
Query 211 ATGAAGGTTGTTGCCGCATACTTGCTCGCTGTTTTGAGCGGAAAAGCTTCACCAACCAGT 270
||||||||||| || || | |||||||| || |||||||| |||||||| ||||| |||
Sbjct 1 ATGAAGGTTGTCGCTGCGTTTTTGCTCGCCGTATTGAGCGGGAAAGCTTCCCCAACTAGT 60
Query 271 GCCGATATCAAGACTATCCTTGGATCAGTTGGTGCTGAGACAGAGGATTCTCAGATTGAG 330
| | ||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||
Sbjct 61 GGCAATATCAAGACTATTCTTGAATCAGTTGGTGCTGAGACGGAGGATTCTCAGATTGAG 120
Query 331 CTTTTGTTGAAGGAAGTGAAAGGAAAAGATTTGGCTGAGTTGATTGCTGCTGGAAGGGAG 390
||||||||||||||||||||||| ||||| ||||||||| | |||||| |||||||||||
Sbjct 121 CTTTTGTTGAAGGAAGTGAAAGGGAAAGACTTGGCTGAGGTAATTGCTTCTGGAAGGGAG 180
Query 391 AAGTTAGCTTCAGTGCCGTCTGGTGGCGGAGGTGGTGTTGCGGTTGCTTCTGCTACATCT 450
|||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||
Sbjct 181 AAGTTAGCTTCAGTGCCGTCTGGTGGTGGTGGTGGTGTTGCGGTTGCTTCTGCTCCATCT 240
Query 451 GGAGGTGGAGGAGGTGGTGGTGCTTCTGCTGCTGAGTCCaagaaagaagagaagaaggaa 510
| ||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 GC---TGG------TGGTGGTGCTCCTGCTGCTGAGTCCAAGAAAGAAGAGAAGAAGGAA 291
Query 511 gaaaaggaagaaTCCGATGATGACATGGGTTTCAGTCTATTCGAGTAA 558
|| |||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 292 GAGAAGGAAGAGTCCGACGATGACATGGGTTTCAGTCTTTTCGAGTAA 339
> Ahg900569 jgi|Araly1|900569|Al_scaffold_0004_1219
Length=297
Score = 246 bits (133), Expect = 1e-64
Identities = 163/176 (93%), Gaps = 7/176 (4%)
Strand=Plus/Plus
Query 383 GAAGGGAGAAGTTAGCTTCAGTGCCGTCTGGTGGCGGAGGTGGTGTTGCGGTTGCTTCTG 442
||| ||||||||||||||||||||| |||||| || ||||||||||||||||||||||
Sbjct 129 GAA-GGAGAAGTTAGCTTCAGTGCCATCTGGT---GGTGGTGGTGTTGCGGTTGCTTCTG 184
Query 443 CTACATCTGGAGGTGGAGGAGGTGGTGGTGCTTCTGCTGCTGAGTCCaagaaagaagaga 502
|| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 185 CTCCATCT---GGTGGAGGAGGTGGTGGTGCTCCTGCTGCTGAGTCCAAGAAAGAAGAGA 241
Query 503 agaaggaagaaaaggaagaaTCCGATGATGACATGGGTTTCAGTCTATTCGAGTAA 558
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 242 AGAAGGAAGAGAAGGAAGAATCTGATGATGACATGGGTTTCAGTCTATTCGAGTAA 297
Score = 198 bits (107), Expect = 4e-50
Identities = 125/134 (93%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 211 ATGAAGGTTGTTGCCGCATACTTGCTCGCTGTTTTGAGCGGAAAAGCTTCACCAACCAGT 270
||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGAAGGTTGTTGCCGCGTTCTTGCTCGCTGTTTTGAGCGGAAAAGCTTCCCCAACCAGC 60
Query 271 GCCGATATCAAGACTATCCTTGGATCAGTTGGTGCTGAGACAGAGGATTCTCAGATTGAG 330
||||||||||||||||| ||||||||||||||||||||| |||| ||| |||||||||||
Sbjct 61 GCCGATATCAAGACTATTCTTGGATCAGTTGGTGCTGAGTCAGATGATGCTCAGATTGAG 120
Query 331 CTTTTGTTGAAGGA 344
|| |||||||||||
Sbjct 121 CTGTTGTTGAAGGA 134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829729410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5