BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G27730.1 Length=667 Score E Sequences producing significant alignments: (Bits) Value Ahg933267 jgi|Araly1|933267|scaffold_401255.1 579 1e-164 > Ahg933267 jgi|Araly1|933267|scaffold_401255.1 Length=382 Score = 579 bits (313), Expect = 1e-164 Identities = 360/383 (94%), Gaps = 2/383 (1%) Strand=Plus/Plus Query 79 CAGGATACTTCTTCATTACCATGGCAACAAGAAATGCTTTGAGAATTGTGTCTCGTAGGT 138 ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1 CAGGATACTTCATCATTACCATGGCAACCAGAAATGCTTTGAGAATTGTGTCTCGTAGGT 60 Query 139 TCTCTAGTGGCAAAGTTCTTAGCGAAGAGGAGAGAGCCGCTGAGAATGTTTTCATTAAGA 198 |||| ||||||||| || ||||||||||||||| ||| |||||||| ||||||||||||| Sbjct 61 TCTCCAGTGGCAAAATTTTTAGCGAAGAGGAGAAAGCTGCTGAGAACGTTTTCATTAAGA 120 Query 199 AAATGGAGCAGGAGAAGCTTCAGAAGTTAGCTCGACAGGGTCCTGGAGAACAAGCAGCAG 258 |||||||| | ||||||||| ||||| |||| |||||||||||||||||||||||||||| Sbjct 121 AAATGGAGAAAGAGAAGCTTGAGAAGATAGCCCGACAGGGTCCTGGAGAACAAGCAGCAG 180 Query 259 GGTCAGCAAGCGAAGCAAAGGTTGCTGGTGCAACAGCATCTGCATCAGCTGAGTCGGGCC 318 || ||||||||||||| |||| ||||||||||||||||||||||||||| ||||| |||| Sbjct 181 GGACAGCAAGCGAAGCCAAGGCTGCTGGTGCAACAGCATCTGCATCAGCCGAGTCAGGCC 240 Query 319 CAAAGGTGTCAGAAGACAAGAACAGAAACTATGCGGTTGTGGCAGGTGTGGTTGCTATTG 378 |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 241 CAAAGGTGTCAGAAGACAAGAACAGAAACTATGCAGTTGTGGCAGGTGTGGTGGCTATTT 300 Query 379 TCGGTTCGATTGGTTGGTACTTGAAAGCAGGTGGAAAGAAGCAGCCAGAGGTCCAAGAGT 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TCGGTTCGATTGGTTGGTACTTGAAAGCAGGTGGAAAGAAGCAGCCAGAGGTCCAAGAGT 360 Query 439 AAAG-AGATAGATTGATTGATGG 460 |||| |||| ||||||||||||| Sbjct 361 AAAGGAGAT-GATTGATTGATGG 382 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24474912714 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5