BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G27730.1

Length=667
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933267 jgi|Araly1|933267|scaffold_401255.1                        579    1e-164


> Ahg933267 jgi|Araly1|933267|scaffold_401255.1
Length=382

 Score =  579 bits (313),  Expect = 1e-164
 Identities = 360/383 (94%), Gaps = 2/383 (1%)
 Strand=Plus/Plus

Query  79   CAGGATACTTCTTCATTACCATGGCAACAAGAAATGCTTTGAGAATTGTGTCTCGTAGGT  138
            ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  1    CAGGATACTTCATCATTACCATGGCAACCAGAAATGCTTTGAGAATTGTGTCTCGTAGGT  60

Query  139  TCTCTAGTGGCAAAGTTCTTAGCGAAGAGGAGAGAGCCGCTGAGAATGTTTTCATTAAGA  198
            |||| ||||||||| || ||||||||||||||| ||| |||||||| |||||||||||||
Sbjct  61   TCTCCAGTGGCAAAATTTTTAGCGAAGAGGAGAAAGCTGCTGAGAACGTTTTCATTAAGA  120

Query  199  AAATGGAGCAGGAGAAGCTTCAGAAGTTAGCTCGACAGGGTCCTGGAGAACAAGCAGCAG  258
            |||||||| | ||||||||| ||||| |||| ||||||||||||||||||||||||||||
Sbjct  121  AAATGGAGAAAGAGAAGCTTGAGAAGATAGCCCGACAGGGTCCTGGAGAACAAGCAGCAG  180

Query  259  GGTCAGCAAGCGAAGCAAAGGTTGCTGGTGCAACAGCATCTGCATCAGCTGAGTCGGGCC  318
            || ||||||||||||| |||| ||||||||||||||||||||||||||| ||||| ||||
Sbjct  181  GGACAGCAAGCGAAGCCAAGGCTGCTGGTGCAACAGCATCTGCATCAGCCGAGTCAGGCC  240

Query  319  CAAAGGTGTCAGAAGACAAGAACAGAAACTATGCGGTTGTGGCAGGTGTGGTTGCTATTG  378
            |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| 
Sbjct  241  CAAAGGTGTCAGAAGACAAGAACAGAAACTATGCAGTTGTGGCAGGTGTGGTGGCTATTT  300

Query  379  TCGGTTCGATTGGTTGGTACTTGAAAGCAGGTGGAAAGAAGCAGCCAGAGGTCCAAGAGT  438
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  TCGGTTCGATTGGTTGGTACTTGAAAGCAGGTGGAAAGAAGCAGCCAGAGGTCCAAGAGT  360

Query  439  AAAG-AGATAGATTGATTGATGG  460
            |||| |||| |||||||||||||
Sbjct  361  AAAGGAGAT-GATTGATTGATGG  382



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24474912714


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5