BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27740.1
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481739 jgi|Araly1|481739|fgenesh2_kg.4__799__AT2G27740.1 1057 0.0
> Ahg481739 jgi|Araly1|481739|fgenesh2_kg.4__799__AT2G27740.1
Length=714
Score = 1057 bits (572), Expect = 0.0
Identities = 660/701 (94%), Gaps = 11/701 (2%)
Strand=Plus/Plus
Query 38 ATTGAGGAAGAGAAAAAGGATCTGAGGAACAATGGCTACGACAAGACAGATCTTGGAGCA 97
||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||
Sbjct 24 ATTTAGGAAGAGAAAAAGGATCTGAGAAACAATGGCAACGACAAGACAGATCTTGGAACA 83
Query 98 GCCACAATCGCCATTTATTCAACGTATCAAGAGCTCGGGGAACATTAGCATGAATGGCAG 157
||||||||||||||| || ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 84 GCCACAATCGCCATTGATGCAACGCATCAAGAGCTCGGGGAACATTAGCATGAACGGCAG 143
Query 158 TCCTATGATTGATGAGAAAGAAGAGGAGCTTTCACAGTCTGCTTTTGCTTTGTTTAAGGC 217
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 TCCTATGATTGATGACAAAGAAGAGGAGCTTTCACAGTCTGCTTTTGCTTTGTTTAAGGC 203
Query 218 AAAGGAAGATGAGATTGAGAGGAGGAAGATGGAGGTTAAGGATAGGGTCCAGAAAAAGCT 277
||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 204 AAAAGAAGATGAGATTGAGAGGAGGAAGATGGAGGTTAAAGATAGGGTCCAGACAAAGCT 263
Query 278 TGGACTCGCTGAGGAAGCTACTAGAAGATTAGCCGAGATTCGGGAAGAGCTTGAAGCTCT 337
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 264 TGGACTCGCTGAGGAAGCTACTAGAAGATTAGCCGAGATTCGGGAAGAACTGGAAGCTCT 323
Query 338 TACCGATCCAATGAGAAAAGAGATATCCGCGATAAGGAAAAGAGTCGATGCTATTAACCG 397
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 TACTGATCCAATGAGAAAAGAGATATCCGCGATAAGGAAAAGAGTCGATGCTATTAACCG 383
Query 398 AGAACTCAAGCCTTTAGGACAGAGTTGTCAGAGAAAGGAGAGAGAATTCAAAGAAGCACT 457
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 384 GGAACTTAAGCCTTTAGGACAGAGTTGTCAGAGAAAGGAGAGAGAATTCAAAGAAGCGCT 443
Query 458 TGAAGCTTACAATGAAAAGAACAAAGAGAAAGCTATATTTGTTAGCAAGCTAGTTGAGCT 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 TGAAGCTTACAATGAAAAGAACAAAGAGAAAGCTATATTTGTTAGCAAGCTAGTTGAGCT 503
Query 518 GGTCACCGAAAGCGAGAAACTGCGGATGACAAAGCTGGAGGAACTCAGCAAAAGCATTGA 577
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 504 GGTTACCGAAAGCGAGAAACTGCGGATGACAAAGCTAGAGGAACTCAGCAAAAGCATTGA 563
Query 578 AATATCGCTACGCTAACACAAAATGATAACAATAAAGGCTGCAAAAGCAGCCAGCTTTGG 637
||||||||||||||||||||| |||| | |||| ||||||||||| ||||
Sbjct 564 AATATCGCTACGCTAACACAAGATGA-A--------GGCTATAAAAGCAGCCAACTTTAA 614
Query 638 TTTCTTCTTTCTTCTGCTCTTTGTAATTGTTTGATTCGATATTTGCTTTT-TGGTGTGAT 696
||||||||||||||| | |||| ||||||||||||||||||||||||||| || ||||||
Sbjct 615 TTTCTTCTTTCTTCTTCGCTTTTTAATTGTTTGATTCGATATTTGCTTTTCTG-TGTGAT 673
Query 697 CAAATCTGTTTTCCTGATTCAGTAACCTTAGTAGAAATGTG 737
||||||||||||||||||||||||||||||| |||||||||
Sbjct 674 CAAATCTGTTTTCCTGATTCAGTAACCTTAGAAGAAATGTG 714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27639114825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5