BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G27740.1 Length=750 Score E Sequences producing significant alignments: (Bits) Value Ahg481739 jgi|Araly1|481739|fgenesh2_kg.4__799__AT2G27740.1 1057 0.0 > Ahg481739 jgi|Araly1|481739|fgenesh2_kg.4__799__AT2G27740.1 Length=714 Score = 1057 bits (572), Expect = 0.0 Identities = 660/701 (94%), Gaps = 11/701 (2%) Strand=Plus/Plus Query 38 ATTGAGGAAGAGAAAAAGGATCTGAGGAACAATGGCTACGACAAGACAGATCTTGGAGCA 97 ||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||| || Sbjct 24 ATTTAGGAAGAGAAAAAGGATCTGAGAAACAATGGCAACGACAAGACAGATCTTGGAACA 83 Query 98 GCCACAATCGCCATTTATTCAACGTATCAAGAGCTCGGGGAACATTAGCATGAATGGCAG 157 ||||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||| Sbjct 84 GCCACAATCGCCATTGATGCAACGCATCAAGAGCTCGGGGAACATTAGCATGAACGGCAG 143 Query 158 TCCTATGATTGATGAGAAAGAAGAGGAGCTTTCACAGTCTGCTTTTGCTTTGTTTAAGGC 217 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 144 TCCTATGATTGATGACAAAGAAGAGGAGCTTTCACAGTCTGCTTTTGCTTTGTTTAAGGC 203 Query 218 AAAGGAAGATGAGATTGAGAGGAGGAAGATGGAGGTTAAGGATAGGGTCCAGAAAAAGCT 277 ||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct 204 AAAAGAAGATGAGATTGAGAGGAGGAAGATGGAGGTTAAAGATAGGGTCCAGACAAAGCT 263 Query 278 TGGACTCGCTGAGGAAGCTACTAGAAGATTAGCCGAGATTCGGGAAGAGCTTGAAGCTCT 337 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 264 TGGACTCGCTGAGGAAGCTACTAGAAGATTAGCCGAGATTCGGGAAGAACTGGAAGCTCT 323 Query 338 TACCGATCCAATGAGAAAAGAGATATCCGCGATAAGGAAAAGAGTCGATGCTATTAACCG 397 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 324 TACTGATCCAATGAGAAAAGAGATATCCGCGATAAGGAAAAGAGTCGATGCTATTAACCG 383 Query 398 AGAACTCAAGCCTTTAGGACAGAGTTGTCAGAGAAAGGAGAGAGAATTCAAAGAAGCACT 457 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 384 GGAACTTAAGCCTTTAGGACAGAGTTGTCAGAGAAAGGAGAGAGAATTCAAAGAAGCGCT 443 Query 458 TGAAGCTTACAATGAAAAGAACAAAGAGAAAGCTATATTTGTTAGCAAGCTAGTTGAGCT 517 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 444 TGAAGCTTACAATGAAAAGAACAAAGAGAAAGCTATATTTGTTAGCAAGCTAGTTGAGCT 503 Query 518 GGTCACCGAAAGCGAGAAACTGCGGATGACAAAGCTGGAGGAACTCAGCAAAAGCATTGA 577 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 504 GGTTACCGAAAGCGAGAAACTGCGGATGACAAAGCTAGAGGAACTCAGCAAAAGCATTGA 563 Query 578 AATATCGCTACGCTAACACAAAATGATAACAATAAAGGCTGCAAAAGCAGCCAGCTTTGG 637 ||||||||||||||||||||| |||| | |||| ||||||||||| |||| Sbjct 564 AATATCGCTACGCTAACACAAGATGA-A--------GGCTATAAAAGCAGCCAACTTTAA 614 Query 638 TTTCTTCTTTCTTCTGCTCTTTGTAATTGTTTGATTCGATATTTGCTTTT-TGGTGTGAT 696 ||||||||||||||| | |||| ||||||||||||||||||||||||||| || |||||| Sbjct 615 TTTCTTCTTTCTTCTTCGCTTTTTAATTGTTTGATTCGATATTTGCTTTTCTG-TGTGAT 673 Query 697 CAAATCTGTTTTCCTGATTCAGTAACCTTAGTAGAAATGTG 737 ||||||||||||||||||||||||||||||| ||||||||| Sbjct 674 CAAATCTGTTTTCCTGATTCAGTAACCTTAGAAGAAATGTG 714 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27639114825 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5