BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G27750.1

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933265 jgi|Araly1|933265|scaffold_401253.1                        630    3e-180


> Ahg933265 jgi|Araly1|933265|scaffold_401253.1
Length=870

 Score =  630 bits (341),  Expect = 3e-180
 Identities = 433/477 (91%), Gaps = 8/477 (2%)
 Strand=Plus/Plus

Query  7    AAGCCTAAGTTTCTTAGTTTGCAAGAAGATGATACATTTGAGAAGATGAGACAAAGCCGT  66
            ||||||| ||||||| |||| |||||||||||||||||||||||||||||| || |||||
Sbjct  330  AAGCCTATGTTTCTTGGTTTTCAAGAAGATGATACATTTGAGAAGATGAGAGAACGCCGT  389

Query  67   CTTCAGAAGAATAAGAGGAAGAGAGACTCAGGTTTGAATGTTTTTGAAGAGGTTGTGAAG  126
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  390  CTTCAGAAGAATAAGAGGAAGAGAGACTCAGGTTTGAATGTTGTTGAAGAGGTTGTGAAG  449

Query  127  GATCTTACTTATGGTTATATGAAGATTGGGGACGGTGACGAG-ATATACGGGAAACACAG  185
            |||||||||||||||||| | ||||||||||| | ||||||| | |||||||||| ||||
Sbjct  450  GATCTTACTTATGGTTATGTTAAGATTGGGGATGATGACGAGGA-ATACGGGAAAAACAG  508

Query  186  AAAGAA-AAAGAGGGTTTCTAAGGCTAAAGAGCTTGAAATGGCGATGACGTTAGAGGCTT  244
            |||||| ||| || ||||||||||| | |||||||||||||||||||| |||||||||||
Sbjct  509  AAAGAAGAAA-AGAGTTTCTAAGGCGACAGAGCTTGAAATGGCGATGAAGTTAGAGGCTT  567

Query  245  TGAAGAAAGATCA-AGAGAAAGGGGATATTGTTGCGAAA-AATCACTCGTGGCAAGCGGC  302
            ||||||||||||  | ||||||| ||| ||||||| ||| || ||||||||| |||||||
Sbjct  568  TGAAGAAAGATCCTA-AGAAAGGAGATTTTGTTGC-AAAGAAGCACTCGTGGAAAGCGGC  625

Query  303  TATAAGCAGAGCTGCTGGTATCAAGATTCATGATGATCCAAAGCGATTGAAGAAGAGAAT  362
            ||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct  626  TATTAGCAGAGCTGCTGGTATCAAGATTCGTGATGATCCAAAGCGATTGAAGCAGAGAAT  685

Query  363  TCACAAGGAAACGAAGATGCGTGAGAAGAACACGGAGAAGTGGAAGGAAAGAGTTGACGT  422
            || |||||||| ||| | ||| ||||||||  | ||||||||||||||||||||||| ||
Sbjct  686  TCGCAAGGAAAAGAATAGGCGCGAGAAGAATGCAGAGAAGTGGAAGGAAAGAGTTGAAGT  745

Query  423  GCAACAGAAGTTTAGGGCAGAGAAACAGCAAAAGAGATCAGAGAATGTTATTGATAG  479
            |||||||||| |||||| |||||||||||||||||||||||||||| ||| ||||||
Sbjct  746  GCAACAGAAGGTTAGGGTAGAGAAACAGCAAAAGAGATCAGAGAATATTAGTGATAG  802



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19917217458


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5