BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27760.1
Length=1622
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900563 jgi|Araly1|900563|Al_scaffold_0004_1213 2026 0.0
> Ahg900563 jgi|Araly1|900563|Al_scaffold_0004_1213
Length=1413
Score = 2026 bits (1097), Expect = 0.0
Identities = 1306/1407 (93%), Gaps = 14/1407 (1%)
Strand=Plus/Plus
Query 63 ATGATGATGTTAAACCCTAGCAATGGCGGAATCGA-G--G-G-AG-AGAAGATGAAGAAG 116
|||||| |||||||||||||||||||||||||||| | | | || |||||| |||||||
Sbjct 1 ATGATGTTGTTAAACCCTAGCAATGGCGGAATCGAGGAAGAGAAGAAGAAGAAGAAGAAG 60
Query 117 AAGGCGAAGGTGGTTGTGATAATGGGTCCAACAGGTTCTGGGAAATCAAAGCTTGCCGTT 176
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGGCGAAGGTGGTTGTGATAATGGGTCCAACAGGTTCTGGGAAATCAAAGCTTGCCGTC 120
Query 177 GATTTGGCGTCTCACTTTCCGGTGGAGATTATTAACGCCGACGCAATGCAGATATACTCT 236
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 GATTTGTCGTCTCACTTTCCGGTGGAGATTATTAACGCCGACGCAATGCAGATTTACTCT 180
Query 237 GGTCTCGACGTTCTCACCAATAAAGTCACCGTCGATGAACAAAAAGGAGTGCCTCATCAT 296
|||||||| ||||||||||||||| ||||| || |||||||||| |||||||||||||||
Sbjct 181 GGTCTCGATGTTCTCACCAATAAAATCACCATCAATGAACAAAACGGAGTGCCTCATCAT 240
Query 297 TTACTTGGGACGGTGAGCT-CAGATATGGAGTTCACAGCTAGGGATTTTCGAGACTTCAC 355
||||||||| | ||||| | ||||||||||||||||||||| ||||||||||||| | ||
Sbjct 241 TTACTTGGGTCCGTGAG-TCCAGATATGGAGTTCACAGCTAAGGATTTTCGAGACGTAAC 299
Query 356 TGTTCCTCTTATTGAGGAGATCGTTTCTCGCAATCACATTCCAGTTCTTGTTGGAGGAAC 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CATTCCTCTTATTGAGGAGATCGTTTCTCGCAATCACATTCCAGTTCTTGTTGGAGGAAC 359
Query 416 ACATTATTATATACAGGCTGTTGTAAGTAAATTTCTTCTTGACGATGCAGCAGAGGATAC 475
||||||||||||||||||||||||||||||||||||||| || ||| | ||||| ||||
Sbjct 360 ACATTATTATATACAGGCTGTTGTAAGTAAATTTCTTCTAGATGATTCGGCAGAAAATAC 419
Query 476 CGAGGAGTGTTGTGCAGATGTTGCTTCAGTGGTTGACCAGGACATGGTTGTTGAGTCTGT 535
||||| || ||| || ||||||||||||||||| |||| ||||||| ||||||||||||
Sbjct 420 TGAGGACTGCTGTTCAAATGTTGCTTCAGTGGTTAACCAAGACATGGATGTTGAGTCTGT 479
Query 536 CTTTGGGAGAGATGATTTGAGCCATGGCTATGAACTTCTTAAAGAGCTTGATCCTGTGGC 595
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 CTCTGGGAGAGATGATTTGAGCCATGGCTATGACCTTCTTAAAGAGCTTGATCCTGTGGC 539
Query 596 AGCTAACAGAATTCACCCCAATAATCACAGAAAAATTAATCAATACCTTAGCTTGCATGC 655
||| |||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||
Sbjct 540 AGCAAACAGAATTCACCCTAATAATCAAAGAAAGATTAATCAATACCTGAGCTTGCATGC 599
Query 656 TAGTAGAGGAGTTCTTCCAAGCAAGCTATATCAGGGAAAGACTGCAGAGAACTGGGGCTG 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TAGTAGAGGAGTTCTTCCAAGCAAGCTATATCAGGGAAAGACTGCAGAGAACTGGGGCTG 659
Query 716 CATCAATGCATCTCGTTTTGATTACTGTTTGATATGCATGGACGCTGAAACTGCAGTACT 775
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 660 CATCGATGCATCTCGTTTTGATTACTGTTTGATATGCATGGACGCTGAAACCGCAGTACT 719
Query 776 GGACAGATATGTTGAACAAAGAGTAGATGCTATGGTAGATGCTGGACTACTTGATGAAGT 835
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 720 GGACAGATATGTTGAACAAAGAGTAGATTCTATGGTAGATGCTGGACTACTTGATGAAGT 779
Query 836 ATATGACATCTACAAACCAGGAGCCGACTATACTAGAGGCCTAAGGCAATCCATAGGTGT 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATATGACATCTACAAACCAGGAGCCGACTATACTAGAGGCCTAAGGCAATCCATAGGTGT 839
Query 896 CAGAGAGTTTGAAGATTTCCTGAAAAT-ACATCTCTCGGAGACATGTGCTGGTCATTTAA 954
||||||||||||||||||||||||| | | |||||| ||||| | ||| |||||| ||||
Sbjct 840 CAGAGAGTTTGAAGATTTCCTGAAATTGA-ATCTCTTGGAGAGAGGTGTTGGTCAGTTAA 898
Query 955 CAAGCTTAAGTAACGATGATAAGGTTATGAAGGAGAATCTGAGGAAGATTCTGAATTTTC 1014
|||||| ||| ||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 899 CAAGCTCAAGCAACAATGATAAGGTTATGAAGGAGAATCTGAGAAAGATTCTGAATTTTC 958
Query 1015 CAAAAGATGATAAGTTGAGGATTATGTTAGAGGAAGCAATTGATAGGGTGAAGTTAAATA 1074
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 959 GGAAAGATGATAAGTTGAAGATTATGTTAGAGGAAGCAATTGATAAGGTGAAGTTAAATA 1018
Query 1075 CCAGAAGGCTCCTTCGTCGTCAAAAAAGGAGAGTTAGTCGGCTAGAAACGGTCTTTGGCT 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CCAGAAGGCTCCTTCGTCGTCAAAAAAGGAGAGTTAGTCGGCTAGAAACGGTCTTTGGCT 1078
Query 1135 GGAATATTCATTACATTGATGCAACAGAGTACATATTAAGCAAATCTGAAGAATCATGGA 1194
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GGAATATCCATTACATTGATGCAACAGAGTACATATTAAGCAAATCTGAAGAATCATGGG 1138
Query 1195 ATGCGCAAGTGGTTAAACCTGCTTCAGAGATCATCAGGTGTTTCCTGGA-GACAGAAACC 1253
||||||||||||||||||| || ||||||||| ||| | |||||||| | |||||||||
Sbjct 1139 ATGCGCAAGTGGTTAAACCCGCGTCAGAGATCCTCAAGCGTTTCCTG-ATGACAGAAACT 1197
Query 1254 GA-ATCGGGTCGGGATCCAACTTCAGGAAAGTCCATTGAAAGAGATCTATGGACTCAATA 1312
|| | ||| || ||| ||| || ||||||||||||||||||||| |||||| ||||||
Sbjct 1198 GATACCGG-TCATGATTTAACCTCCGGAAAGTCCATTGAAAGAGATTTATGGAGTCAATA 1256
Query 1313 TGTTTGCGAGGCTTGTGGAAACAAGATACTAAGAGGAAGACACGAGTGGGAACATCACAA 1372
|||||| |||||||||||||||||| |||||||||||| |||||| |||||||| |||||
Sbjct 1257 TGTTTGTGAGGCTTGTGGAAACAAGGTACTAAGAGGAAAACACGAATGGGAACAACACAA 1316
Query 1373 ACAAGGCCGTACGCATCGTAAGAGAACCACTCGACACAAAAACTCCCAAACTTACAAAAA 1432
||||||||||||||||||||||||| ||| ||||| ||||| ||||||||| |||||
Sbjct 1317 ACAAGGCCGTACGCATCGTAAGAGAGCCAGTCGACTCAAAAGGGCCCAAACTTTTAAAAA 1376
Query 1433 CAGAGAAGTTCAAGAAGCAGAAGTAAA 1459
||||||||| |||||||||||| ||||
Sbjct 1377 CAGAGAAGTGCAAGAAGCAGAACTAAA 1403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60792031020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5