BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G27770.1 Length=1561 Score E Sequences producing significant alignments: (Bits) Value Ahg481737 jgi|Araly1|481737|fgenesh2_kg.4__797__AT2G27770.1 2150 0.0 > Ahg481737 jgi|Araly1|481737|fgenesh2_kg.4__797__AT2G27770.1 Length=1517 Score = 2150 bits (1164), Expect = 0.0 Identities = 1439/1559 (92%), Gaps = 69/1559 (4%) Strand=Plus/Plus Query 1 CTTAGCACACACACAGAGACCT-TAATCCA--TTtctctctctccctctctctcATT-AA 56 ||||||||||||| ||||| || ||||||| |||||||||||| ||||||||| || || Sbjct 1 CTTAGCACACACATAGAGA-CTCTAATCCATTTTTCTCTCTCTCTCTCTCTCTC-TTAAA 58 Query 57 G----aaaaaaaa-agagaatcagagaagaaataaaaagaaagCAA-CTCAAATCTTTAA 110 | |||||||| ||||||| |||| ||||||||||||||||||| || ||||| |||| Sbjct 59 GCAAAAAAAAAAAGAGAGAATAAGAGGAGAAATAAAAAGAAAGCAACCT-AAATCCTTAA 117 Query 111 CCTACAAAAACCCAGATTTGTTAACTCTCTCATTCTTCTTCTTCTTCTCAACAACATTTG 170 |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 118 CCTACAAAAACCCAGATTTGTT-ACTCTCTCATTCTTCTTCTTCTTCT---CAACATTTG 173 Query 171 ATCTTTTTGATTCTCAAAGTATTCTCAAAGTAAAAGAGAAACACACTTTGTTGTCTCAAC 230 ||| ||||||||||||||| | | ||| |||| | ||||||||||||||||||||| Sbjct 174 ATC-TTTTGATTCTCAAAG---T-T-AAA--AAAAAAAAAACACACTTTGTTGTCTCAAG 225 Query 231 AAGCAAGCAAACAAAACCCATCTTGGGAAAATCTCATTTCTTTCCCAAG-AAA-A--TCT 286 || ||| |||||||||||||||||||||||||||||||||||||||||| ||| | ||| Sbjct 226 AATCAAACAAACAAAACCCATCTTGGGAAAATCTCATTTCTTTCCCAAGAAAATATCTCT 285 Query 287 CATTTT-TTCTGTTACAATTTTTTCCTAAGAAA-ATGAGAGATTTGGTGTCATGTTTCAG 344 | |||| || |||||||| |||||| || ||| |||||||||||||||||||||||||| Sbjct 286 CTTTTTATTTTGTTACAA--TTTTCCCAAAAAAGATGAGAGATTTGGTGTCATGTTTCAG 343 Query 345 TGAGAACTCAATAAACGTGACACATCCCTTATCAATATCATCTTCATCATCATCATGTTC 404 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 344 CGAGAACTCAATAAACGTGACACATCCATTATCAATATCATCTTCATCATCATCATGTTC 403 Query 405 AAAATACAGTACCAACAATGTTTGTATCTCACCATCTCTCA-TACCATCAATACAAACCT 463 ||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| Sbjct 404 AAAATACAGTACCAACAATGTTTGTATCTCACCATCTCT-ATTACCATCAACACAAACCT 462 Query 464 CCATTACAAGCATCTACAGAATCACTTTATCGAAACATCTCATCATCAAAGTCACATGGT 523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 463 CCATTACAAGCATCTACAGAATCACTTTATCGAAACATCTCATCATCAAAGTCACATGGT 522 Query 524 GCAATCCACACAACAACAATGGCTTAAGCATCTCTGTTGCATCCGCAGATCAAAACCCTT 583 | |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 523 GTAATCCACACAACAACAATGGCTTAAGCATCTCTGTTTCTTCCGCAGATCAAAACCCTT 582 Query 584 CAACAACTCTCAAACTCAACACTTCTTCTCGTTTCTTCCGTAAGAAGAAAGGTAACAAAT 643 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 583 CAACAACTCTCAAACTCAACACTTCTTCTCGTTTCTTCCGTAAGAAGAAAGGTAACAAAT 642 Query 644 CGGTTGATTCCGATCTCGGTAAAATCGAGGTTTTTTGGGATCTTTCTTCAGCTAAATATG 703 | || || ||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 643 CAGTCGACTCCGATCTCGGTAAAATCGAGGTTTTTTGGGATCTTTCTTCTGCTAAATACG 702 Query 704 ATTCTAACTTGTGTGGTCCTGAACCTATCAATGGCTTCTACGTTATCGTCCTCGTTGATG 763 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 703 ATTCAAACTTGTCTGGTCCTGAACCTATCAATGGCTTCTACGTTATCGTCCTCGTTGATG 762 Query 764 GTCAAATGGGTCTTCTTCTTGGAGATTCATCTGAAGAAACTCTCCGTAAAAAAGGTTTCT 823 |||| ||||||||||||| |||||||||||||||||||| ||||||||||| ||||||| Sbjct 763 CTCAATTGGGTCTTCTTCTAGGAGATTCATCTGAAGAAACCCTCCGTAAAAAGGGTTTCT 822 Query 824 CCGGCGATATCGGTTTCGATTTCTCTCTTGTTTCTCGACAAGAACATTTCACAGGGAACA 883 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 823 CCGGCGATATCGGTTTCGAGTTCTCTCTTGTTTCTCGACAAGAACATTTCACAGGGAACA 882 Query 884 ATACTTTTTACTCGACTAAAG-TAAGATTCGTTGAGACAGGAGATTCACATGAAATCGTC 942 | ||||||||||| ||||||| | ||||||||||| |||||||||||||||||||||||| Sbjct 883 ACACTTTTTACTCAACTAAAGCT-AGATTCGTTGAAACAGGAGATTCACATGAAATCGTC 941 Query 943 ATCAGATGTAATAAAGAAACAGAGGGTCTAAAACAGAGCAATCATTACCCTGTTCTCTCT 1002 ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 942 ATCAGATGTAATAAAGAAACAGAGGGTTTAAAACAGAGCACTCATTACCCTGTTCTCTCT 1001 Query 1003 GTTTGTATTGATAAGAAGACGGTGATAAAAGTGAAGAGGCTTCAATGGAATTTCAGAGGG 1062 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1002 GTTTGTATTGATAAGAAGACGGTGATAAAAGTGAAGAGGCTTCAATGGAATTTTAGAGGG 1061 Query 1063 AATCAAACGATTTTCTTGGATGGATTGCTTGTGGATCTGATGTGGGATGTTCATGATTGG 1122 ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 1062 AATCAGACGATTTTCTTGGATGGATTGCTTGTAGATCTAATGTGGGATGTTCATGATTGG 1121 Query 1123 TTCTTTAGTAATCAAGGAGCTTGTGGAAGAGCTGTGTTCATGTTTAGGACAAGGAATGGT 1182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1122 TTCTTTAGTAATCAAGGAGCTTGTGGAAGAGCTGTGTTCATGTTTAGGACAAGGAATGGT 1181 Query 1183 TTAGACAGCAGCAGGCTTTGGTTAGAAGAGAAGATTGTTAAGAAAGAT---CAACAAGAC 1239 |||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 1182 TTAGACAGTAGCAGGCTTTGGTTAGAAGAGAAGATGGTTAAGAAAGATGAACAACAAGAC 1241 Query 1240 AAGCTTGACTTCTCTCTCTTCATTTACGCCTGTAAGACTTGAAAAACATTATaaaa-aaa 1298 |||||||||||||||||| ||||||||||||||||||||||||||||| | |||| ||| Sbjct 1242 AAGCTTGACTTCTCTCTCCTCATTTACGCCTGTAAGACTTGAAAAACA--A-AAAAGAAA 1298 Query 1299 aaaCTCAAtttttttttG-----AGATTTACAAGAAAAAGGTTATTGATTGATTGATTCT 1353 |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| Sbjct 1299 AAACTCAATTTTTTTTTGTTTTGAGATTTACAAGAAAA-GGTTATTGATTGATTGATTCT 1357 Query 1354 GTTTTTAATATTTGAGATATTTTTATGGGGttttttttttttttGAACTTACAATTTCTT 1413 |||||||||||||| ||| |||| || ||||||| |||||||||||||||| Sbjct 1358 GTTTTTAATATTTGGGAT-TTTT-AT----TTTTTTT-------GAACTTACAATTTCTT 1404 Query 1414 CTTGGGAGGAGTATAGATTTTATTTTCTTTCTTACATTCttttttttttttGGTTGGAGT 1473 |||||||||||||||||||| |||| ||| |||||||||||| ||||||| ||| ||| Sbjct 1405 CTTGGGAGGAGTATAGATTTGATTT-CTTA-TTACATTCTTTTCTTTTTTT--TTG-AGT 1459 Query 1474 TGTGATTTAATATTGAGAGATTCCAAAAGATGTGAATTTCTTCATAGGAGTTGTTGttt 1532 ||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1460 TGTGATTTAGTACTGAGAGATTCCAAAA-ATGTGAATTTCTTCATAGGAGTTGTTGTTT 1517 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58468526075 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5