BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27770.1
Length=1561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481737 jgi|Araly1|481737|fgenesh2_kg.4__797__AT2G27770.1 2150 0.0
> Ahg481737 jgi|Araly1|481737|fgenesh2_kg.4__797__AT2G27770.1
Length=1517
Score = 2150 bits (1164), Expect = 0.0
Identities = 1439/1559 (92%), Gaps = 69/1559 (4%)
Strand=Plus/Plus
Query 1 CTTAGCACACACACAGAGACCT-TAATCCA--TTtctctctctccctctctctcATT-AA 56
||||||||||||| ||||| || ||||||| |||||||||||| ||||||||| || ||
Sbjct 1 CTTAGCACACACATAGAGA-CTCTAATCCATTTTTCTCTCTCTCTCTCTCTCTC-TTAAA 58
Query 57 G----aaaaaaaa-agagaatcagagaagaaataaaaagaaagCAA-CTCAAATCTTTAA 110
| |||||||| ||||||| |||| ||||||||||||||||||| || ||||| ||||
Sbjct 59 GCAAAAAAAAAAAGAGAGAATAAGAGGAGAAATAAAAAGAAAGCAACCT-AAATCCTTAA 117
Query 111 CCTACAAAAACCCAGATTTGTTAACTCTCTCATTCTTCTTCTTCTTCTCAACAACATTTG 170
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 118 CCTACAAAAACCCAGATTTGTT-ACTCTCTCATTCTTCTTCTTCTTCT---CAACATTTG 173
Query 171 ATCTTTTTGATTCTCAAAGTATTCTCAAAGTAAAAGAGAAACACACTTTGTTGTCTCAAC 230
||| ||||||||||||||| | | ||| |||| | |||||||||||||||||||||
Sbjct 174 ATC-TTTTGATTCTCAAAG---T-T-AAA--AAAAAAAAAACACACTTTGTTGTCTCAAG 225
Query 231 AAGCAAGCAAACAAAACCCATCTTGGGAAAATCTCATTTCTTTCCCAAG-AAA-A--TCT 286
|| ||| |||||||||||||||||||||||||||||||||||||||||| ||| | |||
Sbjct 226 AATCAAACAAACAAAACCCATCTTGGGAAAATCTCATTTCTTTCCCAAGAAAATATCTCT 285
Query 287 CATTTT-TTCTGTTACAATTTTTTCCTAAGAAA-ATGAGAGATTTGGTGTCATGTTTCAG 344
| |||| || |||||||| |||||| || ||| ||||||||||||||||||||||||||
Sbjct 286 CTTTTTATTTTGTTACAA--TTTTCCCAAAAAAGATGAGAGATTTGGTGTCATGTTTCAG 343
Query 345 TGAGAACTCAATAAACGTGACACATCCCTTATCAATATCATCTTCATCATCATCATGTTC 404
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 344 CGAGAACTCAATAAACGTGACACATCCATTATCAATATCATCTTCATCATCATCATGTTC 403
Query 405 AAAATACAGTACCAACAATGTTTGTATCTCACCATCTCTCA-TACCATCAATACAAACCT 463
||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 404 AAAATACAGTACCAACAATGTTTGTATCTCACCATCTCT-ATTACCATCAACACAAACCT 462
Query 464 CCATTACAAGCATCTACAGAATCACTTTATCGAAACATCTCATCATCAAAGTCACATGGT 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 CCATTACAAGCATCTACAGAATCACTTTATCGAAACATCTCATCATCAAAGTCACATGGT 522
Query 524 GCAATCCACACAACAACAATGGCTTAAGCATCTCTGTTGCATCCGCAGATCAAAACCCTT 583
| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 523 GTAATCCACACAACAACAATGGCTTAAGCATCTCTGTTTCTTCCGCAGATCAAAACCCTT 582
Query 584 CAACAACTCTCAAACTCAACACTTCTTCTCGTTTCTTCCGTAAGAAGAAAGGTAACAAAT 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 CAACAACTCTCAAACTCAACACTTCTTCTCGTTTCTTCCGTAAGAAGAAAGGTAACAAAT 642
Query 644 CGGTTGATTCCGATCTCGGTAAAATCGAGGTTTTTTGGGATCTTTCTTCAGCTAAATATG 703
| || || ||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 643 CAGTCGACTCCGATCTCGGTAAAATCGAGGTTTTTTGGGATCTTTCTTCTGCTAAATACG 702
Query 704 ATTCTAACTTGTGTGGTCCTGAACCTATCAATGGCTTCTACGTTATCGTCCTCGTTGATG 763
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 ATTCAAACTTGTCTGGTCCTGAACCTATCAATGGCTTCTACGTTATCGTCCTCGTTGATG 762
Query 764 GTCAAATGGGTCTTCTTCTTGGAGATTCATCTGAAGAAACTCTCCGTAAAAAAGGTTTCT 823
|||| ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 763 CTCAATTGGGTCTTCTTCTAGGAGATTCATCTGAAGAAACCCTCCGTAAAAAGGGTTTCT 822
Query 824 CCGGCGATATCGGTTTCGATTTCTCTCTTGTTTCTCGACAAGAACATTTCACAGGGAACA 883
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 823 CCGGCGATATCGGTTTCGAGTTCTCTCTTGTTTCTCGACAAGAACATTTCACAGGGAACA 882
Query 884 ATACTTTTTACTCGACTAAAG-TAAGATTCGTTGAGACAGGAGATTCACATGAAATCGTC 942
| ||||||||||| ||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 883 ACACTTTTTACTCAACTAAAGCT-AGATTCGTTGAAACAGGAGATTCACATGAAATCGTC 941
Query 943 ATCAGATGTAATAAAGAAACAGAGGGTCTAAAACAGAGCAATCATTACCCTGTTCTCTCT 1002
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 942 ATCAGATGTAATAAAGAAACAGAGGGTTTAAAACAGAGCACTCATTACCCTGTTCTCTCT 1001
Query 1003 GTTTGTATTGATAAGAAGACGGTGATAAAAGTGAAGAGGCTTCAATGGAATTTCAGAGGG 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1002 GTTTGTATTGATAAGAAGACGGTGATAAAAGTGAAGAGGCTTCAATGGAATTTTAGAGGG 1061
Query 1063 AATCAAACGATTTTCTTGGATGGATTGCTTGTGGATCTGATGTGGGATGTTCATGATTGG 1122
||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1062 AATCAGACGATTTTCTTGGATGGATTGCTTGTAGATCTAATGTGGGATGTTCATGATTGG 1121
Query 1123 TTCTTTAGTAATCAAGGAGCTTGTGGAAGAGCTGTGTTCATGTTTAGGACAAGGAATGGT 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 TTCTTTAGTAATCAAGGAGCTTGTGGAAGAGCTGTGTTCATGTTTAGGACAAGGAATGGT 1181
Query 1183 TTAGACAGCAGCAGGCTTTGGTTAGAAGAGAAGATTGTTAAGAAAGAT---CAACAAGAC 1239
|||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1182 TTAGACAGTAGCAGGCTTTGGTTAGAAGAGAAGATGGTTAAGAAAGATGAACAACAAGAC 1241
Query 1240 AAGCTTGACTTCTCTCTCTTCATTTACGCCTGTAAGACTTGAAAAACATTATaaaa-aaa 1298
|||||||||||||||||| ||||||||||||||||||||||||||||| | |||| |||
Sbjct 1242 AAGCTTGACTTCTCTCTCCTCATTTACGCCTGTAAGACTTGAAAAACA--A-AAAAGAAA 1298
Query 1299 aaaCTCAAtttttttttG-----AGATTTACAAGAAAAAGGTTATTGATTGATTGATTCT 1353
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1299 AAACTCAATTTTTTTTTGTTTTGAGATTTACAAGAAAA-GGTTATTGATTGATTGATTCT 1357
Query 1354 GTTTTTAATATTTGAGATATTTTTATGGGGttttttttttttttGAACTTACAATTTCTT 1413
|||||||||||||| ||| |||| || ||||||| ||||||||||||||||
Sbjct 1358 GTTTTTAATATTTGGGAT-TTTT-AT----TTTTTTT-------GAACTTACAATTTCTT 1404
Query 1414 CTTGGGAGGAGTATAGATTTTATTTTCTTTCTTACATTCttttttttttttGGTTGGAGT 1473
|||||||||||||||||||| |||| ||| |||||||||||| ||||||| ||| |||
Sbjct 1405 CTTGGGAGGAGTATAGATTTGATTT-CTTA-TTACATTCTTTTCTTTTTTT--TTG-AGT 1459
Query 1474 TGTGATTTAATATTGAGAGATTCCAAAAGATGTGAATTTCTTCATAGGAGTTGTTGttt 1532
||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1460 TGTGATTTAGTACTGAGAGATTCCAAAA-ATGTGAATTTCTTCATAGGAGTTGTTGTTT 1517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58468526075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5