BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27775.2
Length=462
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481736 jgi|Araly1|481736|fgenesh2_kg.4__796__AT2G27775.1 392 1e-108
> Ahg481736 jgi|Araly1|481736|fgenesh2_kg.4__796__AT2G27775.1
Length=565
Score = 392 bits (212), Expect = 1e-108
Identities = 265/290 (91%), Gaps = 6/290 (2%)
Strand=Plus/Plus
Query 27 AGAATCGGAGAAAATGGCTGCAATTGGCATCGCCTCTAGGTCTGCTACATTCATGAGATC 86
||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||
Sbjct 1 AGAATCGGAGAAAATGGCTGCAATTGGGATCGCTTCTAGGTCTACTACATTCATGAGATC 60
Query 87 CATCAATAGAACAGCTACTGCACGAAATTTGATCTCATCCAGAGCTAGACCTTCTGTACC 146
|||| ||||||| ||| || ||||||||||||||||||||||| ||| ||| || || ||
Sbjct 61 CATCCATAGAACCGCTGCTACACGAAATTTGATCTCATCCAGATCTAAACCCTCCGTCCC 120
Query 147 AAACCCTAATTTCACTTCCCCGCGCTTCAACACTTCTTCTCGAATCGAAGGTTCTGTTCC 206
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 121 AAACCCTAATTTCACTTCCCCGCGCTTCAACACTTCTTCTCGCATCGAAGGCTCTGTTCC 180
Query 207 CAGGT-TGC-TGCGGCGAGAATTAAGCACACAACAACCATTTCACAGCAC-CATTGCTGC 263
|| || ||| || || |||||||||||||||||||||||||||||||| | | |||||||
Sbjct 181 CA-GTCTGCTTG-GGAGAGAATTAAGCACACAACAACCATTTCACAGC-CTCGTTGCTGC 237
Query 264 AGCTTGCCTCGTTTCGAAACTTCCTTCTGATGTCACTTCTCCTGAAGGTA 313
||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 238 AGCTTGCCTTGTTTCGAAACTTCCTTCTGATGTCACTTCTTATGAAGGTA 287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16712147982
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5