BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27780.1
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481735 jgi|Araly1|481735|fgenesh2_kg.4__795__AT5G27310.1 767 0.0
Ahg481731 jgi|Araly1|481731|fgenesh2_kg.4__791__AT2G13640.1 767 0.0
Ahg474220 jgi|Araly1|474220|fgenesh2_kg.1__4174__AT2G13640.1 418 4e-116
> Ahg481735 jgi|Araly1|481735|fgenesh2_kg.4__795__AT5G27310.1
Length=975
Score = 767 bits (415), Expect = 0.0
Identities = 529/581 (91%), Gaps = 19/581 (3%)
Strand=Plus/Plus
Query 499 TCGGAGTTG-A-AT-AAGAAAGAAGATCAGAGATCATTAACTCGTGAAACAGAGAAGATT 555
||||||||| | || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 364 TCGGAGTTGAAGATGAAGAAAGAAGATGAGAGATCATTAACTCGTGAAACAGAGAAGATT 423
Query 556 AAAGCAAGGAACAGCTTTTTGGCTTTGAAACAGAAAGAGGATCATAAATCTGAGACTTGT 615
|||||||||||||||||||||| ||||| |||||||||||||||||| || || |||||
Sbjct 424 CAAGCAAGGAACAGCTTTTTGGCGTTGAAGCAGAAAGAGGATCATAAAGCTAAGGCTTGT 483
Query 616 GACGAGAAATATTTTAAGAAAGAGACAAAGACCAATCTAAAACCGCTCAACATGAAGACA 675
|||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 484 GACGAGAAATATGTTAAGAAAGAGACAAAGACCAATCTAAAGCCGCTCAACGTGAAGACA 543
Query 676 AGGCGTGTCTCTTTGGTGGATGTTACAACGAAGAAGCCACATGAAGATG------GTTC- 728
|| |||||| |||||| ||||||||| || |||||||||| |||||||| ||||
Sbjct 544 AGACGTGTCGCTTTGGAGGATGTTACGACCAAGAAGCCACGTGAAGATGTACTAAGTTCT 603
Query 729 --AT--TG-ATAAAGAAGACTAAAACAGAAAAGGAGCTGAAGAAGAAGAAAGTGGATGAG 783
| || ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 604 GGTTCATGTATAAAGAAGACTAAAACAGAAAAGGAGCTGAAGAAAAAGAAAGTGGATGAG 663
Query 784 ATGGTGAAGTTGTTTGAAGCAGCAAAGAAAGCTGCTGATGTGGCCAACGCTAAGGGAGTA 843
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 664 ATGGTGAAGTTGTTCGAAGCAGCAAAGAAAGCTGCTGATGTGGCCAATGCTAAGGGCGTT 723
Query 844 CTTTCTGGTAAAGCAGAGGCGTCTCGCTGCATTGACGCTCTCTCGGTATTGAT-GAAGAT 902
|| || |||||||||||||||||||||||| |||||||||||||| || |||| ||| ||
Sbjct 724 CTCTCAGGTAAAGCAGAGGCGTCTCGCTGCGTTGACGCTCTCTCGTTACTGATGGAA-AT 782
Query 903 CAACATTACTCCAAAACCAAAAGAACCAAGGAGGATGATGGATAAGCTTGAGGGACTTAC 962
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 CAATATTACTCCAAAACCAAAAGAACCAAGGAGGATGATGGATAAGCTTGAGGGACTTAC 842
Query 963 AAAACATAAAGACCGCATGATTTGCCATGTTGCATCAGCCCTTCTTCACCTTTGGAGACA 1022
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 843 AAAACATAAAGACCGCAAGATTTGCCATGCTGCATCAGCCCTTCTTCACCTTTGGAGACA 902
Query 1023 GAGGATCAGAGAACAAGAACGTAAAAAGTC-TGTTACCAAG 1062
||| ||||||||||||||||||||| |||| | | ||||||
Sbjct 903 GAGAATCAGAGAACAAGAACGTAAAGAGTCATCT-ACCAAG 942
Score = 518 bits (280), Expect = 4e-146
Identities = 349/381 (92%), Gaps = 9/381 (2%)
Strand=Plus/Plus
Query 4 AAGAACGAAGAAAAGATGAGAGTGAGAATTGCGAAGGAGAGATCTGACTTGTGCGACTTG 63
||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||| |
Sbjct 10 AAGAACGAAGAGAAGATGAGAGTAAGGATTGCGAAGGAGAGATCTGACTTATGCGACTGG 69
Query 64 ACTGCTGCTGCAATTAAGGCTACTTACAATACACGGAACCCATGCGAAGTCGAGCGATGC 123
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 70 ACTGCTGCTGCAATTAAGGCTACTTACAACACACGGAACCCATGCGAAGTCGAGAGATGC 129
Query 124 ATCGACGTGTTGAATCACTTGAAGTCTCTGTCTCTTTCCGTGAAGGATATACG-ATTGTC 182
||||| |||||||| ||||||||||||||||||||||||| |||||||||| | ||||||
Sbjct 130 ATCGATGTGTTGAAGCACTTGAAGTCTCTGTCTCTTTCCGCGAAGGATATA-GAATTGTC 188
Query 183 TGAATCAATAGTTAAGTTGGAGACTTTGAGAAGTCATAGGAACCCTAGAATCCGTAAGGC 242
|||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||
Sbjct 189 TGAATCAATAGTTAAGCTGGAGACTTTGAGAAGCCATAGGAACCCTAGGATCCGTAAGGA 248
Query 243 AGCCCAAGCCTTGTTTCATTCATGGTTGAAGACATTCTACGCACATGGAAGCGACAACTC 302
||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 249 AGCTCAAGCCTTGTTTCATTCATGGTTGAAGACATTCTACACACACGGAAGCGACAACTC 308
Query 303 TTTCAAAGCTGCTCTTACCAAGGATCGTCTGAAGATGGAGAAGCATGTTCTAACAAGGTG 362
|||| | || | | ||||||| |||| |||||| | ||||||||||||||||||||||
Sbjct 309 TTTCGA---TG-T-T-ACCAAGGCTCGTTTGAAGACGAAGAAGCATGTTCTAACAAGGTG 362
Query 363 TTCGGAGTTGAAGAAGGAAGA 383
|||||||||||||| | ||||
Sbjct 363 TTCGGAGTTGAAGATG-AAGA 382
> Ahg481731 jgi|Araly1|481731|fgenesh2_kg.4__791__AT2G13640.1
Length=975
Score = 767 bits (415), Expect = 0.0
Identities = 529/581 (91%), Gaps = 19/581 (3%)
Strand=Plus/Plus
Query 499 TCGGAGTTG-A-AT-AAGAAAGAAGATCAGAGATCATTAACTCGTGAAACAGAGAAGATT 555
||||||||| | || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 364 TCGGAGTTGAAGATGAAGAAAGAAGATGAGAGATCATTAACTCGTGAAACAGAGAAGATT 423
Query 556 AAAGCAAGGAACAGCTTTTTGGCTTTGAAACAGAAAGAGGATCATAAATCTGAGACTTGT 615
|||||||||||||||||||||| ||||| |||||||||||||||||| || || |||||
Sbjct 424 CAAGCAAGGAACAGCTTTTTGGCGTTGAAGCAGAAAGAGGATCATAAAGCTAAGGCTTGT 483
Query 616 GACGAGAAATATTTTAAGAAAGAGACAAAGACCAATCTAAAACCGCTCAACATGAAGACA 675
|||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 484 GACGAGAAATATGTTAAGAAAGAGACAAAGACCAATCTAAAGCCGCTCAACGTGAAGACA 543
Query 676 AGGCGTGTCTCTTTGGTGGATGTTACAACGAAGAAGCCACATGAAGATG------GTTC- 728
|| |||||| |||||| ||||||||| || |||||||||| |||||||| ||||
Sbjct 544 AGACGTGTCGCTTTGGAGGATGTTACGACCAAGAAGCCACGTGAAGATGTACTAAGTTCT 603
Query 729 --AT--TG-ATAAAGAAGACTAAAACAGAAAAGGAGCTGAAGAAGAAGAAAGTGGATGAG 783
| || ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 604 GGTTCATGTATAAAGAAGACTAAAACAGAAAAGGAGCTGAAGAAAAAGAAAGTGGATGAG 663
Query 784 ATGGTGAAGTTGTTTGAAGCAGCAAAGAAAGCTGCTGATGTGGCCAACGCTAAGGGAGTA 843
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 664 ATGGTGAAGTTGTTCGAAGCAGCAAAGAAAGCTGCTGATGTGGCCAATGCTAAGGGCGTT 723
Query 844 CTTTCTGGTAAAGCAGAGGCGTCTCGCTGCATTGACGCTCTCTCGGTATTGAT-GAAGAT 902
|| || |||||||||||||||||||||||| |||||||||||||| || |||| ||| ||
Sbjct 724 CTCTCAGGTAAAGCAGAGGCGTCTCGCTGCGTTGACGCTCTCTCGTTACTGATGGAA-AT 782
Query 903 CAACATTACTCCAAAACCAAAAGAACCAAGGAGGATGATGGATAAGCTTGAGGGACTTAC 962
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 CAATATTACTCCAAAACCAAAAGAACCAAGGAGGATGATGGATAAGCTTGAGGGACTTAC 842
Query 963 AAAACATAAAGACCGCATGATTTGCCATGTTGCATCAGCCCTTCTTCACCTTTGGAGACA 1022
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 843 AAAACATAAAGACCGCAAGATTTGCCATGCTGCATCAGCCCTTCTTCACCTTTGGAGACA 902
Query 1023 GAGGATCAGAGAACAAGAACGTAAAAAGTC-TGTTACCAAG 1062
||| ||||||||||||||||||||| |||| | | ||||||
Sbjct 903 GAGAATCAGAGAACAAGAACGTAAAGAGTCATCT-ACCAAG 942
Score = 518 bits (280), Expect = 4e-146
Identities = 349/381 (92%), Gaps = 9/381 (2%)
Strand=Plus/Plus
Query 4 AAGAACGAAGAAAAGATGAGAGTGAGAATTGCGAAGGAGAGATCTGACTTGTGCGACTTG 63
||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||| |
Sbjct 10 AAGAACGAAGAGAAGATGAGAGTAAGGATTGCGAAGGAGAGATCTGACTTATGCGACTGG 69
Query 64 ACTGCTGCTGCAATTAAGGCTACTTACAATACACGGAACCCATGCGAAGTCGAGCGATGC 123
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 70 ACTGCTGCTGCAATTAAGGCTACTTACAACACACGGAACCCATGCGAAGTCGAGAGATGC 129
Query 124 ATCGACGTGTTGAATCACTTGAAGTCTCTGTCTCTTTCCGTGAAGGATATACG-ATTGTC 182
||||| |||||||| ||||||||||||||||||||||||| |||||||||| | ||||||
Sbjct 130 ATCGATGTGTTGAAGCACTTGAAGTCTCTGTCTCTTTCCGCGAAGGATATA-GAATTGTC 188
Query 183 TGAATCAATAGTTAAGTTGGAGACTTTGAGAAGTCATAGGAACCCTAGAATCCGTAAGGC 242
|||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||
Sbjct 189 TGAATCAATAGTTAAGCTGGAGACTTTGAGAAGCCATAGGAACCCTAGGATCCGTAAGGA 248
Query 243 AGCCCAAGCCTTGTTTCATTCATGGTTGAAGACATTCTACGCACATGGAAGCGACAACTC 302
||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 249 AGCTCAAGCCTTGTTTCATTCATGGTTGAAGACATTCTACACACACGGAAGCGACAACTC 308
Query 303 TTTCAAAGCTGCTCTTACCAAGGATCGTCTGAAGATGGAGAAGCATGTTCTAACAAGGTG 362
|||| | || | | ||||||| |||| |||||| | ||||||||||||||||||||||
Sbjct 309 TTTCGA---TG-T-T-ACCAAGGCTCGTTTGAAGACGAAGAAGCATGTTCTAACAAGGTG 362
Query 363 TTCGGAGTTGAAGAAGGAAGA 383
|||||||||||||| | ||||
Sbjct 363 TTCGGAGTTGAAGATG-AAGA 382
> Ahg474220 jgi|Araly1|474220|fgenesh2_kg.1__4174__AT2G13640.1
Length=852
Score = 418 bits (226), Expect = 4e-116
Identities = 305/343 (89%), Gaps = 6/343 (2%)
Strand=Plus/Plus
Query 724 GGTTCATTGATAAAGAAGAC---TAAAACAGAAAAGGAGCTGAAGAAGAAGAAAGTGGAT 780
||||||||||||| |||||| ||||||||||||||||||| | || |||||||| |||
Sbjct 433 GGTTCATTGATAATGAAGACAATTAAAACAGAAAAGGAGCTGTATAACAAGAAAGTTGAT 492
Query 781 GAGATGGTGAAGTTGTTTGAAGCAGCAAAGAAAGCTGCTGATGTGGCCAACGCTAAGGGA 840
|||||||| || ||||| ||| ||||| ||||||| ||||||||||||| |||||||
Sbjct 493 GAGATGGTAAAACAGTTTGTAGCTGCAAATAAAGCTGTTGATGTGGCCAACACTAAGGGC 552
Query 841 GTACTTTCTGGTAAAGC-AGAGGCGTCTCGCTGCATTGACGCTCTCTCGGTATTGATGAA 899
|| || ||||||||| | ||||| |||||| |||||||||||||||| | || |||||||
Sbjct 553 GTTCTCTCTGGTAAA-CGAGAGGTGTCTCGTTGCATTGACGCTCTCTTGTTACTGATGAA 611
Query 900 GATCAACATTACTCCAAAACCAAAAGAACCAAGGAGGATGATGGATAAGCTTGAGGGACT 959
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 612 AATCAATATTACCCCAAAACCAAAAGAACCAAGGAGGATGATGGATAAGCTTGAGGGATT 671
Query 960 TACAAAACATAAAGACCGCATGATTTGCCATGTTGCATCAGCCCTTCTTCACCTTTGGAG 1019
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 672 TACAAAACATAAAGACCGCAAGATTTGCCATGTTGCATCAGCCCTTCTTCACTTTTGGAG 731
Query 1020 ACAGAGGATCAGAGAACAAGAACGTAAAAAGTCTGTTACCAAG 1062
|||||| ||||||||||||||||||||| | |||| ||||||
Sbjct 732 ACAGAGAATCAGAGAACAAGAACGTAAAGATTCTGG-ACCAAG 773
Score = 171 bits (92), Expect = 1e-41
Identities = 155/183 (85%), Gaps = 14/183 (8%)
Strand=Plus/Plus
Query 220 AGGAACCCTAGAATCCGTAAGGCAGCCCAAGCCTTGTTTCATTCATGGTTGAAGACATTC 279
|||||| || |||| |||||| ||| |||||||||||||||||||||||||||||| ||
Sbjct 120 AGGAACTCT--AATCTGTAAGGAAGCTCAAGCCTTGTTTCATTCATGGTTGAAGACAATC 177
Query 280 TACGCACATGGAAGCGACAACTCTTTCAAAGCTGCTCTTACCAAGGATCGTCTGAAGATG 339
|||||||| ||||||||||||||||||||||||| || | || | |||||||
Sbjct 178 TACGCACAAGGAAGCGACAACTCTTTCAAAGCTGATC--A-------TC-T--GAAGATG 225
Query 340 GAGAAGCATGTTCTAACAAGGTGTTCGGAGTTGAAGAAGGAAGACGAACCGGGAACTATG 399
|||||||||||||||||||||||||||||||||||||| |||| | || | || |||||
Sbjct 226 AAGAAGCATGTTCTAACAAGGTGTTCGGAGTTGAAGAAGAAAGAAGTACAGAGATCTATG 285
Query 400 GCT 402
|||
Sbjct 286 GCT 288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41248996194
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5