BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G27790.1

Length=955
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933257 jgi|Araly1|933257|scaffold_401245.1                       1077    0.0  


> Ahg933257 jgi|Araly1|933257|scaffold_401245.1
Length=712

 Score = 1077 bits (583),  Expect = 0.0
 Identities = 630/653 (96%), Gaps = 2/653 (0%)
 Strand=Plus/Plus

Query  60   TCGTCTCAGAATTGGAGAAGATGGGTCGATACAAAGATGAAACCCCAGCGGTTAGGGTTT  119
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1    TCGTCTCAGAATTGGAGAAGATGGGTCGATACAAAGATGAATCCCCAGCGGTTAGGGTTT  60

Query  120  ATACAGTTTGCGATGAATCAAGATACATGATAGTACGTAATGTCCCAGCTTTGGGTTGTG  179
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  61   ATACAGTTTGCGATGAATCAAGATACTTGATAGTACGTAATGTCCCAGCTTTGGGTTGTG  120

Query  180  GTGATGATCTCATGAGATTATTCATGACTTATGGAGAAGTTGAAGAATGTAAACCTATGG  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GTGATGATCTCATGAGATTATTCATGACTTATGGAGAAGTTGAAGAATGTAAACCTATGG  180

Query  240  ATGCAGAAGACTGTGCGGAGTTCACGGATGTCTACTGGATCAAGTTTCGTCTCATCACTA  299
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  181  ATGCAGAAGACTGTGCGGAGTTCACAGATGTCTACTGGATCAAGTTTCGTCTCATCACTA  240

Query  300  ATGCTAGATTTGCAAAGAGGAAGTTGGATGAATCAAGTTTTTTGGGAAATCGGCTCCAAA  359
            | || ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct  241  ACGCCAGATTTGCAAAGAGGAAATTGGATGAATCAACTTTTTTGGGAAATCGGCTCCAAA  300

Query  360  TTTCATATGCTCCTGAATACGAAAATGTAAATGACACAAAGGATAAGTTAGAATCTAGAA  419
            |||||||||||||||||||||| |  || | |||||||||||||||||||||| |||| |
Sbjct  301  TTTCATATGCTCCTGAATACGAGAGCGTCAGTGACACAAAGGATAAGTTAGAAACTAGGA  360

Query  420  GGAAAGAAGTGCTTGCAAGACTGAACCCCCAGAAAGAAAAGAGCACCTCCCAAGTTACAA  479
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  361  GGAAAGAAGTGCTTGCAAGACTGAACCCCCAGAAAGCAAAGAGCACCTCCCAAGTTACAA  420

Query  480  AATTGGCTGGACCAGCTTTGACCCAAACAGACAATGTTTCCTC-ACAGCGGAGAGAGATG  538
            |||||||||||||||||||||||||||| |||||| |||| || ||||||||||||||||
Sbjct  421  AATTGGCTGGACCAGCTTTGACCCAAACGGACAATTTTTC-TCCACAGCGGAGAGAGATG  479

Query  539  GAGTACCAATTCCATAGAGGAAATGCTCCTGTTACTCGAGTTTCATCAGATCAGGAGTAT  598
            ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct  480  GAGTACCAATTCCATAGAGGAAATGCTCCTGTTACTCGAGTTTCATCTGACCAGGAGTAT  539

Query  599  TTTGCGTCATCTTCAATGAATCAGACGGTTAAAACTGTGAGGGAGAAACTCAATAAGATT  658
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  540  TTTGCGTCGTCTTCAATGAATCAGACGGTTAAAACTGTGAGGGAGAAACTCAATAAGATT  599

Query  659  GAAGAAAGTGGTAACCAAAAGAGGTTACAACCAAGCAGCCAAACACAACCTGA  711
            ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  600  GAAGAAAGTGGTAACCAAAAGAGGTCACAACCAAGCAGCCAAACACAACCTGA  652



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35454312810


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5