BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27800.1
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481728 jgi|Araly1|481728|fgenesh2_kg.4__788__AT2G27800.1 1753 0.0
> Ahg481728 jgi|Araly1|481728|fgenesh2_kg.4__788__AT2G27800.1
Length=1311
Score = 1753 bits (949), Expect = 0.0
Identities = 1203/1322 (91%), Gaps = 31/1322 (2%)
Strand=Plus/Plus
Query 28 TCTACATTTCTAGGCTCCATCTTCAGAACCGCTAAAGCACGAATTTTGATCTCACCCATC 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 13 TCTACATTTCTAGGCTCCATCTTCAGAACCGCTAAAGCACGAATTTTGATCTCACCCAAA 72
Query 88 GCTAGACGCTCTCTCCCAAGCCCTAATTTCACTTCCTCGCGCTTCCACACTTCTTCTTCT 147
||||||| |||||||| || ||||||||||||||||||||||||| ||||||||||||||
Sbjct 73 GCTAGACTCTCTCTCCTAAACCCTAATTTCACTTCCTCGCGCTTCAACACTTCTTCTTCT 132
Query 148 CTTCGTCAGTCTCGAATCGAAGGTTCTATTCCAAGAAGTTTTCTTCCG--AGCATCCATG 205
|| | |||||||| |||||||||||| ||| | ||||||||||||||| || | || |
Sbjct 133 CTGCCTCAGTCTCCAATCGAAGGTTCCATTTCGAGAAGTTTTCTTCCGCAAG-A-CC-T- 188
Query 206 TACG-ATTTCATAGTGTTAGTGCTTCCACTTGGTTCAGTTC-TCGACGAACCTCTTCTCA 263
|| | | | ||| | | | | | || | | || || ||| | || || |||
Sbjct 189 TA-GCA-TCCATCG-ACGA-T-C-T-CA--TAG-TC---TCATCG-C-TTCCACTAGTCA 233
Query 264 AGGTCGATTAGCATCTGTTTCCATGTATATACAATACTCAACTTCAGTCCCAACACGTTC 323
|||| |||| ||||||||||| ||| ||| |||||||||||| ||| |||||||||||||
Sbjct 234 AGGTGGATTCGCATCTGTTTCTATGGATAGACAATACTCAACATCACTCCCAACACGTTC 293
Query 324 ACTTAGAAGGAGAATCAGCAATAGAAAGAAATCGAGTGCAAAACCAATCCTTAATG--TT 381
||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| ||
Sbjct 294 ACTTAGAAGGAGAATCAGCAATAGAAAGAAATCGAGTACGAAACCAGTCCTTAATGAATT 353
Query 382 TCAAAGTTTCATGAAACGA-TATCAAAGCTTCCACCAAGATTCACCCCTGAAGAACTAGC 440
| |||||||| ||| ||| || ||||||||||||||||||| |||||||||||||||||
Sbjct 354 T--AAGTTTCAAGAAGCGATTA-CAAAGCTTCCACCAAGATTTACCCCTGAAGAACTAGC 410
Query 441 TGATGCTATAACTCTTGAAGAAGACCCGTTTCTGTGTTTCCATCTCTTTAACTGGGCATC 500
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 411 TGATGCTATAACACTTGAAGAAGACCCGTTTCTGTGTTTCCATCTCTTTAACTGGGCGTC 470
Query 501 GCAACAGCCGAGGTTTACGCATGAGAATTGCTCTTACCATATCGCGATAAGGAAGCTCGG 560
||| ||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 471 GCAGCAGCCAAGGTTTAAGCATGTGAATTGCTCTTACCATATCGCGATAAGGAAGCTCGG 530
Query 561 TGCTGCGAAAATGTATCAAGAAATGGATGATATTGTGAACCAAGTGCTCTCGGTTCGTCA 620
||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 531 AGCTGCGAAAATGTATAAAGAAATGGATGATATCGTGAACCAAGTACTCTCGGTTCGTCA 590
Query 621 TATTGGTAACGAGAATCTTTACAATTCGATCATCTTCTATTTCACGAAAGCCGGGAAGTT 680
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TATTGGTAACGAGAATCTATACAATTCGATCATCTTCTATTTCACGAAAGCCGGGAAGTT 650
Query 681 GATACGCGCTGTGAATATATTTAGACATATGGTGACTAGTAAGAACTTGGAATGTAGACC 740
|||||| |||||||||||||||||||| ||||||||||||| |||||||||||| |||||
Sbjct 651 GATACGTGCTGTGAATATATTTAGACACATGGTGACTAGTATGAACTTGGAATGCAGACC 710
Query 741 AACGATTAGAACGTATCATATTCTTTTCAAAGCCTTGTTGGGTAGAGGTAACAACTCTTA 800
|||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 711 AACGATTAGAACATATCATATTCTCTTCAAAGCCTTGTTGGGTCGAGGTAACAACTCTTA 770
Query 801 CATAAACCATGTGTATATGGAGACAGTAAGATCTTTGTTTAGGCAAATGGTGGATAGCGG 860
|| || |||| ||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 771 CACAAGCCATATGTATATGGAGACAGTAAGATCTTTGTTTCGACAAATGGTGGATAGCGG 830
Query 861 TATTGAACCAGACGTATTCGCTTTGAACTGTTTGGTTAAAGGTTACGTGCTCTCGCTTCA 920
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 GATTGAACCAGACGTATTCGCTTTGAACTGTTTGGTTAAAGGTTACGTGCTCTCGCTTCA 890
Query 921 CGTCAATGATGCACTTAGGATATTTCATCAGATGAGTGTGGTTTACGATTGTGAACCGAA 980
|||||||||||| ||||||||||||||||| ||||||||||||||| |||| | |||||
Sbjct 891 CGTCAATGATGCTCTTAGGATATTTCATCAAATGAGTGTGGTTTACAATTGCCAGCCGAA 950
Query 981 TTCGTTTACTTATGATTATCTAATACATGGATTATGTGCTCAAGGTAGGACCATTAATGC 1040
||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 951 TTCTTTTACTTATGATTATCTAATACATGGGTTATGTGCACAAGGTAGGACCATTAATGC 1010
Query 1041 TAGAGAATTGCTTAGTGAGATGAAAGGAAAAGGCTTTGTTCCTAATGGGAAATCTTATAA 1100
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1011 TAGAGAGTTGCTTAATGAGATGAAAGGAAAAGGCTTTGTTCCTAATGGGAAATCATATAA 1070
Query 1101 CTCTCTGGTTAATGCTTTTGCGCTTAGCGGTGAGATTGACGATGCAGTGAAATGTTTGTG 1160
|||| |||| |||||||||||||||| |||||| || || || || ||||||||||||||
Sbjct 1071 CTCTTTGGTGAATGCTTTTGCGCTTACCGGTGAAATCGATGACGCGGTGAAATGTTTGTG 1130
Query 1161 GGAGATGATTGAGAATGGTCGTGTGGTTGATTTTATTA-GCTATAGAACACTAGTTGATG 1219
||||||||||||||| ||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 1131 GGAGATGATTGAGAACAGTCGTGTGGTTGATTTTATTACG-TATAGAACACTTGTTGATG 1189
Query 1220 AGAGTTGTAGGAAAGGGAAGTATGATGAAGCGACGAGATTGTTGGAGATGTTGCGAGAGA 1279
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1190 AGAGTTGTAGGAAAGGGAAGTATGATGAAGCGACGAGAGTATTGGAGATGTTGCGAGAGA 1249
Query 1280 AACAGCTTGTGGATAGAGATTCTTATGATAAGCTTGTGAATGTTCTTCACAAGGATTTAT 1339
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
Sbjct 1250 AACAGCTTGTGGATAGAGATTCTTATGAGAAGCTTGTGAATGTTCTTCACATGGATTTGT 1309
Query 1340 AG 1341
||
Sbjct 1310 AG 1311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50169758772
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5