BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27810.1
Length=2691
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481725 jgi|Araly1|481725|fgenesh2_kg.4__785__AT2G27810.1 3666 0.0
> Ahg481725 jgi|Araly1|481725|fgenesh2_kg.4__785__AT2G27810.1
Length=2591
Score = 3666 bits (1985), Expect = 0.0
Identities = 2313/2463 (94%), Gaps = 55/2463 (2%)
Strand=Plus/Plus
Query 253 aaaaaaaTGTCAAGCTCCGACCCGAAACCCGGACCTAAACCGGGTCCATGGCCACCAACT 312
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 160 AAAAAAATGTCAAGCTCCGACCCGAAACCCGGACCTAAACCGGGTCCATGGCCTCCAGCT 219
Query 313 CCAGAATCCGCCGCAATGCCACCGTCTTCCTGGGCTaaaaaaaCCGGATTTCGTCCCAAA 372
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 220 CCAGAATCCGCCGCAATGCCACCGTCTTCTTGGGCTAAAAAAACCGGATTTCGTCCCAAA 279
Query 373 TTCTCCGGTGAAACTACCGCCACTGATTCTTCTTCCGGTCAGCTCTCATTACCGGTTAGA 432
||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 280 TTCTCCGGTGAGACTACCGCCACTGATTC--C-TCCGGTCAGCTCTCATTACCGGTTAGA 336
Query 433 GCTAAACAACAAGAAACCCAACCGGATCTTGAAGCTGGTCAAACCAGACTCCGTCCTCCT 492
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 337 GCTAGACAACAAGAAACCCAACCGGATCTTGAAGCTGGTCAAGCCAGACTCCGTCCTCCT 396
Query 493 CCTCCTGT-CTCCGCCGCAGTAACTAACGGTGAGACTGACAAGGATAAGAAAGAG----- 546
||| | | |||| |||| ||| |||||||||||||||| || ||||||||||||
Sbjct 397 CCT-GTCTCCTCCTCCGCCGTAGCTAACGGTGAGACTGATAAAGATAAGAAAGAGAAACC 455
Query 547 --------AAGC--C-AC--CACCA---CCACCTCCTGGTTCTGTTGCTGTTCCGGTTAA 590
|| | | || ||||| ||||||||||||||||||||||||||||||||
Sbjct 456 ACCACCACAAACAACAACAACACCACCTCCACCTCCTGGTTCTGTTGCTGTTCCGGTTAA 515
Query 591 GGATCAACCGGTTAAGAGAAGGAGAGATTCTGATGGGGTTGTTGGAAGATCAAATGGACC 650
|||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 516 GGATCAGCCGGTTAAGAGAAGGAGAGATTCTGATGGAGTTACTGGAAGATCAAATGGACC 575
Query 651 CGATGGAGCTAATGGGTCAGGTGACCCGGTTAGAAGACCGGGTCGTATTGAAGAAACAGT 710
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 576 TGATGGAGCTAATGGGTCAGGTGACCCGGTTAGAAGACCGGGTCGTATTGAAGAGACAGT 635
Query 711 TGAGGTTTTGCCTCAGAGTATGGATGATGATTTAGTGGCTAGGAATTTGCATATGAAGTA 770
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 636 TGAGGTTTTGCCTCAGAGTATGGATGATGATTTAGTGGCTAGAAATTTGCATATGAAGTA 695
Query 771 TGGTCTTAGAGATACTCCTGGACTTGTTCCAATTGGGTTCTATGGTTTGCAGCATTACCT 830
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 696 TGGTCTCAGAGATACTCCTGGACTTGTTCCAATTGGGTTCTATGGTTTGCAACATTACCT 755
Query 831 TTCAATGTTGGGATCATTGATTCTGGTTCCACTTGTTATTGTTCCTGCAATGGGAGGTTC 890
||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 756 TTCAATGTTAGGATCATTGATTCTGGTTCCACTGGTTATTGTACCTGCAATGGGAGGTTC 815
Query 891 ACATGAGGAGGTTGCAAATGTTGTATCGACTGTACTTTTTGTCTCTGGAATCACTACACT 950
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 CCACGAGGACATTGCAAATGTTGTATCGACTGTACTTTTTGTCTCTGGAATCACTACACT 875
Query 951 GTTGCATACTTCGTTTGGGTCGAGGCTTCCTTTGATTCAAGGTCCTTCCTTTGTCTTTCT 1010
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 876 GTTGCATACTTCGTTTGGGTCGAGGCTTCCTTTGATTCAAGGACCTTCCTTTGTTTTTCT 935
Query 1011 GGCTCCGGCTTTGGCTATAATAAACTCTCCAGAGTTTCAAGGTTTGAATGGAAATAATAA 1070
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 936 TGCTCCGGCTTTGGCTATAATAAACTCTCCGGAGTTTCAAGGTTTGAATGGAAATAATAA 995
Query 1071 CTTCAAGCATATCATGAGGGAGCTGCAAGGTGCAATCATAATTGGTTCAGCTTTTCAAGC 1130
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 996 CTTCAAGCATATCATGAGGGAGCTACAAGGTGCAATCATAATTGGTTCAGCTTTTCAAGC 1055
Query 1131 AGTGCTTGGATACAGTGGCCTAATGTCACTGATTTTGAGGTTGGTCAATCCAGTAGTTGT 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 AGTGCTTGGATACAGTGGCCTAATGTCACTGATTTTGAGGTTGGTCAATCCAGTAGTTGT 1115
Query 1191 TGCTCCGACGGTAGCTGCAGTTGGACTTTCCTTTTACAGCTATGGTTTCCCGCTTGTTGG 1250
||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1116 TGCTCCGACAATAGCTGCAGTTGGACTTTCTTTTTACAGTTATGGTTTCCCGCTTGTTGG 1175
Query 1251 TAAATGTCTTGAGATCGGTGTTGTGCAGATACTACTTGTGATCATCTTTGCTCTTTACCT 1310
||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1176 TAAATGTCTTGAGATTGGTGTTGTGCAAATATTACTTGTGATCATCTTTGCTCTTTACCT 1235
Query 1311 CCGGAAAATCTCAGTTTTAAGCCATCGTATTTTCCTTATTTATGCGGTTCCATTGAGTCT 1370
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1236 CCGGAAAATCTCAGTTTTAAGCCATCGTATTTTCCTGATTTATGCGGTTCCATTGAGTCT 1295
Query 1371 TGCAATCACTTGGGCTGCTGCATTCCTTTTAACTGAAACAGGAGCTTACACCTACAAAGG 1430
|||||||||||||||||||||||||||| |||| ||| ||||||||| ||||||||||||
Sbjct 1296 TGCAATCACTTGGGCTGCTGCATTCCTTCTAACCGAAGCAGGAGCTTTCACCTACAAAGG 1355
Query 1431 TTGTGACCCAAACGTTCCTGTCTCAAATGTTGTATCGACCCACTGCAGAAAATACATGAC 1490
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1356 TTGTGACCCAAACGTTCCTGTCTCAAATGTTGTATCGAGCCACTGCAGAAAATACATGAC 1415
Query 1491 CAGAATGAAGTACTGTCGGGTTGATACTTCTCATGCGCTGAGTTCCGCCCCATGGTTTAG 1550
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1416 CAGAATGAAGTACTGTCGGGTTGATACTTCTCATGCACTGAGTTCCGCCCCTTGGTTTAG 1475
Query 1551 GTTTCCTTACCCCTTGCAATGGGGTGTACCGTTATTCAACT-GGAAAATGGCTTTTGTTA 1609
||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||
Sbjct 1476 GTTTCCTTACCCCTTGCAATGGGGTGTACCGATATTCAACTTGGAAA-TGGCTTTTGTTA 1534
Query 1610 TGTGTGTGGTCTCCGTAATTGCTTCAGTAGATTCGGTTGGTTCGTACCATGCTTCTTCTC 1669
|||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1535 TGTGCGTAGTCTCCATAATTGCTTCAGTAGATTCGGTTGGTTCGTACCATGCTTCTTCTC 1594
Query 1670 TATTAGTAGCATCGAGGCCTCCAACTCGTGGTGTTGTGAGTCGGGCAATCGGTCTTGAAG 1729
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1595 TATTAGTAGCATCAAGGCCTCCAACTCGTGGTGTTGTGAGTCGGGCTATCGGTCTTGAAG 1654
Query 1730 GTTTCACAAGTGTCTTAGCCGGTCTTTGGGGTACAGGTACTGGTTCAACCACTCTAACCG 1789
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1655 GTTTCACAAGTGTCTTAGCCGGTCTTTGGGGTATGGGTACTGGTTCAACCACTCTAACCG 1714
Query 1790 AAAACGTTCACACAATCGCTGTGACCAAAATGGGAAGCCGCAGAGTTGTTGAGTTAGGCG 1849
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1715 AAAACGTTCACACAATCGCTGTGACCAAAATGGGAAGCCGCAGAGTCGTTGAGTTAGGGG 1774
Query 1850 CGTGTGTTTTGGTTATATTTTCTCTTGTTGGTAAGGTTGGAGGGTTTCTCGCATCAATTC 1909
| |||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||
Sbjct 1775 CATGTGTTTTGGTTATATTTTCCCTTCTTGGCAAGGTTGGAGGGTTTCTCGCATCAATTC 1834
Query 1910 CGCAAGTCATGGTTGCTTCTCTTCTGTGCTTCATGTGGGCAATGTTTACGGCTTTAGGTC 1969
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1835 CGCAAGTCATGGTTGCCTCTCTTCTTTGCTTTATGTGGGCAATGTTTACGGCTTTAGGTC 1894
Query 1970 TTTCCAACTTACGTTATAGTGAAGCTGGAAGCTCGCGGAATATCATAATTGTTGGGTTGT 2029
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1895 TTTCCAACTTACGTTATAGTGAAGCTGGAAGCTCACGGAATATCATAATTGTCGGGTTGT 1954
Query 2030 CGCTGTTCTTTTCTCTCTCTGTCCCAGCTTACTTCCAGCAGTATGGCATATCTCCAAACT 2089
|||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 1955 CGCTGTTCTTTTCTCTCTCTGTCCCAGCTTACTTCCAGCAATACGGCATTTCTCCAAACT 2014
Query 2090 CGAATCTCTCTGTTCCAAGTTATTACCAACCTTACATTGTTTCTTCACATGGACCCTTCA 2149
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2015 CGAATCTCTCTGTTCCAAGTTATTACCAACCTTACATTGTTTCTTCTCATGGACCCTTCA 2074
Query 2150 AAAGCCAATACAAAGGGATGAACTACGTGATGAACACGCTCTTGTCAATGAGCATGGTGA 2209
|||||||||| |||||| ||||||| ||||||||||||||||| || |||| ||||||||
Sbjct 2075 AAAGCCAATATAAAGGGGTGAACTATGTGATGAACACGCTCTTATCGATGAACATGGTGA 2134
Query 2210 TTGCGTTCATCATGGCTGTGATTTTGGACAACACGGTCCCGGGGAGCAAGCAAGAACGCG 2269
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2135 TTGCGTTCATAATGGCTGTGATTTTGGACAACACAGTCCCGGGGAGCAAGCAAGAACGCG 2194
Query 2270 GAGTTTATGTTTGGTCTGACAGTGAGACTGCAACAAGAGAACCAGCACTTGCTAAAGACT 2329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2195 GAGTTTATGTTTGGTCTGACAGTGAGACTGCAACAAGAGAACCAGCACTTGCTAAAGACT 2254
Query 2330 ATGAACTGCCGTTTCGGGTGGGGAGGTTTTTCAGATGGGTCAAATGGGTGGGCATTTGAT 2389
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2255 ATGAGCTGCCGTTTCGGGTGGGTCGGTTTTTCAGATGGGTCAAATGGGTGGGCATTTGAG 2314
Query 2390 AAAACAACAACACAATGGCAAAAAGTGGTAAATATGTCAGATGAGAGATCCCTCtttttc 2449
||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2315 AAAACAACA-CA-A-TGGCAAAAAGTGGTAAATATGTCAGATGAGAGATCCCTCTTTTTC 2371
Query 2450 ttttctttttCCCGTCGTCTCTGTTATTTTGATTAGTAGTCTCTCAATTTTATAACACGG 2509
|||| |||| | || |||||||||||||||||||||||| | | ||
Sbjct 2372 TTTTATTTT-CA--TCTTCTCTGTTATTTTGATTAGTAGTC----A---------C--GG 2413
Query 2510 TGGAAGCTTTTTCTTGGGTCACAAGTTTGTCAATTGGAGAGTTTTTGGTTATTGAAACAG 2569
|| ||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||
Sbjct 2414 TG-AAGCTTTTTCTTGGGTCGCAAGTTTGTCTATTGGAGAGTTTTTGGTTA---AAACAG 2469
Query 2570 AGAATATGGAAGTCATGTTGTTGTAAGTTATATAGATTATGATCAAATGCTTTTGTAACT 2629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2470 AGAATATGGAAGTCATGTTGTTGTAAGTTATATAGATTATGATCAAATGCTTTTGTAACT 2529
Query 2630 AGAGTTATTC-TTTTTTCTCACTATCTATCTTATTCCTTGTTTGTTAAATCTATTGCGAA 2688
|||||||||| |||||| ||||||||||| || || |||||||| ||||| |||||||||
Sbjct 2530 AGAGTTATTCATTTTTT-TCACTATCTATATTTTTTCTTGTTTGGTAAATATATTGCGAA 2588
Query 2689 TTT 2691
|||
Sbjct 2589 TTT 2591
Score = 267 bits (144), Expect = 4e-70
Identities = 166/176 (94%), Gaps = 4/176 (2%)
Strand=Plus/Plus
Query 39 ctctctctctcattttcacattcactgttacttcttcatagaacttctcactctctctca 98
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTCTCTCTCGTTTTCACATTCACTGTTACTTCTTCATAGAACTTCTCACTCTCTCTT- 59
Query 99 cacacaACTGTACTCTCTCTGGAGATTTGAAGAAAACCCTAATTCCCAATTTTCTTTTGT 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CACACAACTGTACTCTCTCTGGAGATTTGAAGAAAACCCTAATTCCCAATTTTCTTTTGT 119
Query 159 CGTTTTCCTTCTCCGACGATTGAGAGTTTTCCTAGATCTAAAGAAAAAAGTTTCAA 214
||||||||||||||| ||| |||| ||||| ||||||||||||||||| | ||||
Sbjct 120 CGTTTTCCTTCTCCGGCGAG-GAGA-TTTTC-TAGATCTAAAGAAAAAAATGTCAA 172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101510502925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5