BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27830.1
Length=1258
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481720 jgi|Araly1|481720|fgenesh2_kg.4__780__AT2G27830.1 1033 0.0
> Ahg481720 jgi|Araly1|481720|fgenesh2_kg.4__780__AT2G27830.1
Length=947
Score = 1033 bits (559), Expect = 0.0
Identities = 823/939 (88%), Gaps = 64/939 (7%)
Strand=Plus/Plus
Query 351 CTCTTAACATTCCATTACTC-TTATCCTTT-TACCCTCATCATCCTCCACTATTTACAGT 408
||||| |||||||||||||| |||| |||| |||||||| ||||||||| |||||||| |
Sbjct 42 CTCTT-ACATTCCATTACTCTTTAT-CTTTATACCCTCACCATCCTCCATTATTTACATT 99
Query 409 TTTGCCACTCTGACTTTATG---CTAGCTTCTTCCGGTGACTGGCGATAACACGAGAGAG 465
|||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct 100 TTTGCCACTCTGACTTTATGTTATTAGCTTCTTCCGGTGACCGGCGACAACAC--GAGAG 157
Query 466 CCTTCGCCTTCTCCAAGCTTCATACTCTTCCGACGATAAAGATTAGA-AGACATGAAGAA 524
|| || | | | || || | | | ||| || | | ||||||||||
Sbjct 158 ----CG------CC-A-C--CGTA-TC-T-C--C----AAGCTT-CATACACATGAAGAA 193
Query 525 CGGTAACCGGAAAACAACGCCGGAAACAGAGAAGTCTCACCGGAGAAAGTTATCAGAGAA 584
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 194 CGGTAACCGGAAAACAACGCCGGAAACAGAGAAGTCTCACCGGAGAAAATTATCGGAGAA 253
Query 585 AGCGATGTCGTTTCACGGCAGAGGAACAACGCCGTTATCAAATCCAGGCGAGCTTCGAAG 644
|||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||
Sbjct 254 AGCGATGTCGTTTCACGGCAGAGGAACAACGCCGGTATCGAATCCAGGTGAGCTTCGAAG 313
Query 645 ACCGAAAACGTTACCGGAGTTATTCTCCACCGGTCAAAGCATCACCGTACCGGAGACGGT 704
||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 314 ACCGAAAACATTACCGGAGTTATTCTCCACCGGTCAAAGCATCACCGGACCGGTGACGGA 373
Query 705 TTCACTT-CCGCCACGTTTGACGAAACTTTTACTTAACGTGACGGTACAAGGAAGTTTAG 763
|| || ||||| ||| | |||||||||||||| ||||| ||||| |||||||||||||
Sbjct 374 ATC-GTTCCCGCCGCGTCTAACGAAACTTTTACTCAACGTAACGGTGCAAGGAAGTTTAG 432
Query 764 GAGCCGTACAAATTATAATCTCGCCGGAATCCACCGTGAGTGATTTAATCGACGCCGCCG 823
|||| ||||||||||||||||||||||||||||||||||||| | |||||||||||| ||
Sbjct 433 GAGCTGTACAAATTATAATCTCGCCGGAATCCACCGTGAGTGGTCTAATCGACGCCG-CG 491
Query 824 -TTCGTCAGTACGTTAAAGAAGCTCGCCGGCCATTTTTACCGGAATCTGAACCGTCACGA 882
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 492 ATTCGTCAGTATGTTAAAGAAGCTCGCCGGCCATTTTTACCGAAATCTGAACCGTCAAGA 551
Query 883 TTTGATCTTCATTACTCGCAGTTTAGTCTTGAGAGTATTGTAAGAGACGAGAAGTTGATA 942
|||||||||||||| || ||||||||||| || ||||||| ||||||||||||| |||||
Sbjct 552 TTTGATCTTCATTATTCTCAGTTTAGTCTCGAAAGTATTGGAAGAGACGAGAAGCTGATA 611
Query 943 TCGCTAGGGTCGAGAAACTTTTTCTTATGTGGTCGGAAAGAGACCGGAGGGTTTATCGGC 1002
||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 612 TCGCTTGGATCGAGAAACTTTTTCTTATGTGGCCGGAAAGAGACCGGAGGCTTTATCGGC 671
Query 1003 TGTGGTTTATCGTCGGAATCTTGTTCTAAGGAAGCAGAGAAAGTGGCTAAAACTGGTTTT 1062
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 672 GGTGGTTCATCGTCGGAATCTTGTTCGAAGGAAGCAGAGAAAGTGGCTAAAACTGGTTTT 731
Query 1063 CATTGGCTCAAATTTATGGGCTTCTAGAAGTTTTTA-TCATTTTGAATTATTGCTTTTT- 1120
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 732 CATTGGCTCAAATTTATGGGCTTCTAGAAGTTTTTAATCATTTTGGATTATTGCTTTTTT 791
Query 1121 CAAATTAGTTCCATTCTTTAGAAAAAGGATATAAAAAACA---------TCTG-T----- 1165
| ||||||||||||| ||||| ||||||||||| |||||| | || |
Sbjct 792 CGAATTAGTTCCATT-TTTAGGAAAAGGATATATAAAACAAAAAAAAAATTTGGTAATCT 850
Query 1166 GTATATTATTT-CTATGTAGAAATGAAAATCATTAATTAGTGGTGTATAATGTATTTTAA 1224
|||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 851 GTATAT-ATTTTCTATGTAGAAATGAAAATCATTAATTTGTGGTGTATAATGTATTTTAA 909
Query 1225 TCAA-TTATATAC--C-AAGATGATTATATGAA-GTTCT 1258
|||| |||||||| | |||||||||||| ||| |||||
Sbjct 910 TCAAATTATATACTACCAAGATGATTATA-GAAAGTTCT 947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47005556661
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5