BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27840.1
Length=880
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320603 jgi|Araly1|320603|fgenesh1_pm.C_scaffold_4000660 534 3e-151
Ahg359762 jgi|Araly1|359762|fgenesh1_pg.C_scaffold_905000001 196 2e-49
> Ahg320603 jgi|Araly1|320603|fgenesh1_pm.C_scaffold_4000660
Length=633
Score = 534 bits (289), Expect = 3e-151
Identities = 535/646 (83%), Gaps = 47/646 (7%)
Strand=Plus/Plus
Query 92 ATGGAGTTTTGGGGTATCGAGATTAAGCCAGGGAAGCCATTTAAGGTGA-TACAAAAAGA 150
||||||||||||||||| ||||||||||||| |||||| |||||| ||| | | ||||||
Sbjct 1 ATGGAGTTTTGGGGTATTGAGATTAAGCCAGAGAAGCCTTTTAAGATGATTTC-AAAAGA 59
Query 151 TGGATTCATGGTCCATGCCTCTCAGGTTACCCTTGGTGACGTTGAGAAGGTTAAAAAAGA 210
||||| ||||||||||||| ||||||||| |||||||| ||||| ||||||||| ||||
Sbjct 60 TGGATACATGGTCCATGCCAATCAGGTTACTCTTGGTGAGGTTGACAAGGTTAAAGAAGA 119
Query 211 TGAGACTTTTGCCGTTTATGTGAAGATTGGTGATGATGAGAATGGGTTTATGATTGGAAA 270
||||| | || |||||||||||||||||||||||||| ||| ||||||||| ||||||||
Sbjct 120 TGAGAATGTTCCCGTTTATGTGAAGATTGGTGATGATAAGAGTGGGTTTATCATTGGAAA 179
Query 271 TCTCTCACAGAAGTTTCCTCAATTTTCTATTGATCTCTACTTAGGGCACGAGTTTGAGAT 330
|||||||||||||||||||||| ||||| ||||| ||| ||||||||| |||||||||||
Sbjct 180 TCTCTCACAGAAGTTTCCTCAAGTTTCTCTTGATATCTTCTTAGGGCATGAGTTTGAGAT 239
Query 331 TTCTCACAACAGTACAAGCA-GTGTCTATCTTATTGGTTACAGGACCT-T-TG-ATG--C 384
||||||||| || || || |||||||||||||||| ||||||||| | || | | |
Sbjct 240 TTCTCACAAGTCTAAAA-CAAGTGTCTATCTTATTGGCTACAGGACCCCTATGGACGAAC 298
Query 385 --T-T--TT-GACGAACTGGATGAGG---AGATTGA-TTC-TGATTCTGAGTTAGATGAA 433
| | || | | || | || || | ||| ||||||||||||||| |||
Sbjct 299 AATATCCTTTGTTTCATTGCCTTTTTTTTAG-TTCAATTCATGATTCTGAGTTAGAGGAA 357
Query 434 TATATGGAACAACAAATTGCTGCTTTGCCTCAAAATGAGATCAAT------------CCT 481
| ||||||||||||||||| ||||||||||||||||||||| ||| |||
Sbjct 358 TTTATGGAACAACAAATTGATGCTTTGCCTCAAAATGAGATGAATAATGAGATGAATCCT 417
Query 482 GAAGAAGATGA-TGAATCCGAC---TCAGATGAGATGGGTTTGGACGAGGATGATGACTC 537
|||||||||| | | |||||| |||||||||||||||||||||||||||||||| ||
Sbjct 418 GAAGAAGATGGGTCA-TCCGACGACTCAGATGAGATGGGTTTGGACGAGGATGATGAGTC 476
Query 538 TTCAGATGAAGAAGATGTAGAGGCTGAAGCACCTTTAAAGGTGGCTCCTCCGAGCAAAAA 597
||| ||||||||||| |||||||||||||||| | ||| |||||||||||| ||
Sbjct 477 TTCGGATGAAGAAGACGTAGAGGCTGAAGCAC----A--GGT---TCCTCCGAGCAAGAA 527
Query 598 GATGCCAAATGGTGCATTTGAGATAGCTAAAGGTGGAAAGAAGAACAAGTCATCAGGAGG 657
|||| |||||||| | || |||| ||||||||||||| ||||||||||||||||||||
Sbjct 528 GATGTCAAATGGTATACATGGGATACCTAAAGGTGGAAACAAGAACAAGTCATCAGGAGG 587
Query 658 GAAGAAGAGATGCCCATTCCCTTGTGGTCCCTCTTGCAAAAAGTAG 703
|||||||||||| ||||||||||||||| | || ||||||||||||
Sbjct 588 GAAGAAGAGATGTCCATTCCCTTGTGGTTCTTCCTGCAAAAAGTAG 633
> Ahg359762 jgi|Araly1|359762|fgenesh1_pg.C_scaffold_905000001
Length=584
Score = 196 bits (106), Expect = 2e-49
Identities = 209/254 (82%), Gaps = 26/254 (10%)
Strand=Plus/Plus
Query 417 ATTCTGAGTTAGATGAATATATGGAACAACAAATTGCTGCTTTGCCTC-----------A 465
||||||||||||| |||| ||||||||||||||||| ||||||||||| |
Sbjct 1 ATTCTGAGTTAGAGGAATTTATGGAACAACAAATTGATGCTTTGCCTCAAAATGAGATGA 60
Query 466 A-AATGAGATCAATCCTGAAGAAGAT-GATGAAT-C--CGACTCAGATGAGATGGGTTTG 520
| |||||||| ||||||||||||||| | | || | ||||||||||||||||||||||
Sbjct 61 ATAATGAGATGAATCCTGAAGAAGATGGGT-CATCCGACGACTCAGATGAGATGGGTTTG 119
Query 521 GACGAGGATGATGACTCTTCAGATGAAGAAGATGTAGAGGCTGAAGCACCTTTAAAGGTG 580
|||||||||||||| ||||| ||||||||||| |||||||||||||||| | |||
Sbjct 120 GACGAGGATGATGAGTCTTCGGATGAAGAAGACGTAGAGGCTGAAGCAC----A--GGT- 172
Query 581 GCTCCTCCGAGCAAAAAGATGCCAAATGGTGCATTTGAGATAGCTAAAGGTGGAAAGAAG 640
|||||||||||| |||||| |||||||| | || |||| ||||||||||| | |||
Sbjct 173 --TCCTCCGAGCAAGAAGATGTCAAATGGTATACATGGGATACCTAAAGGTGGAGACAAG 230
Query 641 AACAAGTCATCAGG 654
||||||||||||||
Sbjct 231 AACAAGTCATCAGG 244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32595094035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5