BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27920.1
Length=1725
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320599 jgi|Araly1|320599|fgenesh1_pm.C_scaffold_4000656 2130 0.0
Ahg481716 jgi|Araly1|481716|fgenesh2_kg.4__776__AT2G27900.2 200 3e-50
> Ahg320599 jgi|Araly1|320599|fgenesh1_pm.C_scaffold_4000656
Length=1389
Score = 2130 bits (1153), Expect = 0.0
Identities = 1315/1393 (94%), Gaps = 11/1393 (1%)
Strand=Plus/Plus
Query 134 ATGAAGACAA-CAGTTGTTTATCTGGTGATTCTATGTCTCATTGTTTCATGTACCAATGG 192
||||||| || | |||||| |||| ||||||||||| |||||||| ||||||||||||||
Sbjct 1 ATGAAGA-AATCCGTTGTTCATCTTGTGATTCTATGCCTCATTGTGTCATGTACCAATGG 59
Query 193 AGAAACCAAACATGTAAGAAAAATTAACTCCGATGGATCCGAAGCTTGGGGATACGTCGA 252
| ||||||||| |||||||| || ||||||| ||||||||||||||||||||||||||||
Sbjct 60 ACAAACCAAACCTGTAAGAAGAAGTAACTCCAATGGATCCGAAGCTTGGGGATACGTCGA 119
Query 253 AGTTAGACCAAAAGCACACATGTTTTGGTGGCATTATAAAAGTCCATATAGAGTTGAAAA 312
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 120 AGTTAGACCAAAAGCACACATGTTTTGGTGGCATTATAAAAGTCCATATAGAGTTGAAGA 179
Query 313 TCCTTCCAAGCCATGGCCTATCATCCTCTGGCTCCAAGGTGGACCTGGAGCTTCAGGGGT 372
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 TCCTTCTAAGCCATGGCCTATCATCCTCTGGCTTCAAGGTGGACCTGGAGCTTCAGGGGT 239
Query 373 TGGTATAGGGAATTTTCAGGAGGTTGGACCATTAGACACATTTCTCAAGCCCAGAAACTC 432
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGGAATAGGGAATTTTCAGGAGGTTGGACCATTAGACACATTTCTCAAGCCCAGAAACTC 299
Query 433 AACTTGGTTGAAGAAAGCCGATCTTTTGTTTGTGGATAGTCCAGTTGGGGCAGGGTACAG 492
||||||||||||||| |||||||| |||||||||||||||||||||||| |||| || ||
Sbjct 300 AACTTGGTTGAAGAAGGCCGATCTCTTGTTTGTGGATAGTCCAGTTGGGTCAGGTTATAG 359
Query 493 TTTCGTGGAGGGCAATCAAAAGGATTTGTATGTGAAAAGTGATGAAGAAGCAGCACAAGA 552
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 360 TTTCGTGGAGGGGAATCAAAAGGATTTGTATGTGAAAAGTGATGAAGAAGCAGCAAAAGA 419
Query 553 TTTGACCAAACTGTTGCAACAACTCTTCAACAAAAACCAGACTTTAAACCAAAGCCCTCT 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTTGACCAAACTGTTGCAACAACTCTTCAACAAAAACCAGACTTTAAACCAAAGCCCTCT 479
Query 613 CTTCATTGTTGCTGAATCTTATGGTGGCAAAATCGCGGTTAAGCTCGGTTTATCGGTTAT 672
||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||| |
Sbjct 480 CTTCATTGTTGCTGAATCTTATGGTGGCAAAATTGCGGTTAAACTCGGTTTATTGGTT-T 538
Query 673 T-GACGCAGTTCAATCTGGCAAATTGAAGCTTCATCTTGGAGGAGTGATTTTGGGAGATA 731
| ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 539 TCGACGCGGTTCAATCTGGCAAATTAAAGCTTCAACTTGGAGGAGTGATTTTGGGAGATA 598
Query 732 GTTGGATATCCCCTGAAGATTTTGTGTTTTCATGGGGACCTCTTCTCAAGCATGTCTCTA 791
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 599 GTTGGATATCCCCTGAAGATTTTGTGTTTTCATGGGGACCTCTTCTCAAGTATGTCTCTA 658
Query 792 GGCTTGATGACAATGGCTTGGATAGCTCTAATAGC---TTAGCAGAGAAGATTAAAACAC 848
|||||||||||||| |||||||| ||||| |||| ||||| ||||||||||||||||
Sbjct 659 GGCTTGATGACAATAGCTTGGATCTCTCTACTAGCAGCTTAGCCGAGAAGATTAAAACAC 718
Query 849 AAATTAAAAATGGTGAATACGTTGGAGCGACGCAAACATGGATGGACCTCGAAAACTTGA 908
||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| |||||
Sbjct 719 AAATTAAGAATGGTGAATACGTTGAAGCCACGCAAACATGGATGGACCTCGAAACCTTGA 778
Query 909 TTAGTTCCAAATCCAATTTC-GTCGATTTTTACAATTTTCTATTGGATACTGGTATGGAC 967
|||||||||||||||||| | ||||||||||||||||||||| ||||||||| ||||||
Sbjct 779 TTAGTTCCAAATCCAATT-CAGTCGATTTTTACAATTTTCTACTGGATACTGAAATGGAC 837
Query 968 CCTGTCTCGCTCACAACGAGTCTaaaaatcaaaaaggaagagaaaataaaaaaGTATTCA 1027
||||||||||| || |||||| ||||||||||||| |||||||||||| |||||||||||
Sbjct 838 CCTGTCTCGCTTACGACGAGTTTAAAAATCAAAAAAGAAGAGAAAATATAAAAGTATTCA 897
Query 1028 AGATATTTAAATGATATGAGAAGTTTAAGTGACGTAGAAGATGTTGAAGGAGACCTTGAT 1087
||||||||||||||| ||||||||| |||||||||||||| || |||||||||||||| |
Sbjct 898 AGATATTTAAATGATTTGAGAAGTTCAAGTGACGTAGAAGCTGCTGAAGGAGACCTTGGT 957
Query 1088 AAATTAATGAATGGCGTTATTAAGAAGAAGCTCAAGATTATTCCCAACGACCTCATATGG 1147
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AAGTTAATGAATGGTGTTATTAAGAAGAAGCTCAAGATTATTCCCAACGACCTCATATGG 1017
Query 1148 GGAAACAATTCGGATGATGTGTTTACAGCAATGGAGGCTGCTTTTATGAAACCCGTAATT 1207
|||||||||||| |||| |||||| || |||||||||||||||||||||||||| ||
Sbjct 1018 GGAAACAATTCGAATGACGTGTTTGGAGTGATGGAGGCTGCTTTTATGAAACCCGTCGTT 1077
Query 1208 GAAGACGTCGATGAGCTTCTTGCCACGGGGGTAGATGTGACCATCTATAATGGACAACTT 1267
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1078 GAAGACGTCGATGAGCTTCTTGCCAAGGGGATAGATGTGACCATCTATAATGGACAACTT 1137
Query 1268 GATGTTATCTGTTCAACAAGTGGAACTGAAGCATGGGTTCACAAACTCAGGTGGGAGGGG 1327
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1138 GATGTTATCTGTTCAACAAGTGGAACTGAAGCATGGGTTCACAAACTCAAGTGGGAGGGG 1197
Query 1328 CTAGAAGAATTCAAGAAAATGGAAAGAGA-GCCATTATTCTGCGAAAGTGACAGAGCAAC 1386
|||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct 1198 CTAGAAGAATTCAAGAAAATGGAAAG-GAAGCCATTATTCTGCGAAAGTGACAGAACAAC 1256
Query 1387 AAGAGGCTTTACCAAATCATACAAAAATCTCCATTTTTATTGGATTCTTGGTGCTGGTCA 1446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 AAGAGGCTTTACCAAATCATACAAAAATCTCCATTTTTATTGGATTCTTGGTGCTGGTCA 1316
Query 1447 TTTTGTACCAGTAGATGAGCCATGTGTAGCATTAAAAATGGTTGGAGAGATAACCAAGTC 1506
||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 1317 TTTTGTACCAGTAGATGAGCCATGTGTTGCATTAAAAATGGTTGGAGAAATAACGAAGTC 1376
Query 1507 ACCACAACTTTGA 1519
|||||||||||||
Sbjct 1377 ACCACAACTTTGA 1389
> Ahg481716 jgi|Araly1|481716|fgenesh2_kg.4__776__AT2G27900.2
Length=3705
Score = 200 bits (108), Expect = 3e-50
Identities = 118/123 (96%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 1451 GTACCAGTAGATGAGCCATGTGTAGCATTAAAAATGGTTGGAGAGATAACCAAGTCACCA 1510
||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 3696 GTACCAGTAGATGAGCCATGTGTTGCATTAAAAATGGTTGGAGAAATAACGAAGTCACCA 3637
Query 1511 CAACTTTGACCCATTCTTTCTTCCAAACTCTCACATCACAATATGACTCCTTTCACATCT 1570
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3636 CAACTTTGGCCCATTCTTTCTTCCAAACTTTCACATCACAATATGACTCCTTTCACATCT 3577
Query 1571 GAT 1573
|||
Sbjct 3576 GAT 3574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64715326255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5