BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G27930.1

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg900543 jgi|Araly1|900543|Al_scaffold_0004_1193                    518    2e-146


> Ahg900543 jgi|Araly1|900543|Al_scaffold_0004_1193
Length=387

 Score =  518 bits (280),  Expect = 2e-146
 Identities = 306/319 (96%), Gaps = 0/319 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGGAGCCGAAATGGCTCGAAGGTCTCTTAAGAACAAACTTCTTCAGCATTTGCCCT  60
            ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct  1    ATGGAGGAGCCAAAATGGCTGGAAGGTCTCTTGAGAACAAACTTCTTCAGCATTTGCCCT  60

Query  61   CGACATCGCGAGACACCGCGAAATGAGTGCAACATGTTCTGTCTCTCCTGTCAAAACGCT  120
            | ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CAACACCGTGAGACACCGCGAAATGAGTGCAACATGTTCTGTCTCTCCTGTCAAAACGCT  120

Query  121  GCGTTTTGCTTCTACTGCCGCTCCTCCTTTCACATTGATCATCCCGTCCTTCAGATAAGA  180
            |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct  121  GCGTTTTGCTTCTACTGCCGCTCCTCCTTTCACATTGACCATCCCGTTCTTCAGATAAGA  180

Query  181  AGATCGTCGTATCATGATGTGGTGAGAGTATCGGAGATAGAGAATGCATTGGACATAAGA  240
            ||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct  181  AGATCTTCATATCATGATGTGGTGAGAGTGTCGGAGATAGAGAAGGCATTGGACATAAGA  240

Query  241  GGAGTGCAAACTTATGTCATCAATAGCGCGAGGGTTCTCTTCTTAAACGAGAGACCTCAG  300
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  241  GGAGTGCAAACTTATGTCATCAACAGCGCGAGGGTTCTCTTCTTAAACGAGAGACCTCAG  300

Query  301  CCTAAGAACTCCTCCCATG  319
            |||||||||||||||||||
Sbjct  301  CCTAAGAACTCCTCCCATG  319


 Score = 87.9 bits (47),  Expect = 7e-17
 Identities = 47/47 (100%), Gaps = 0/47 (0%)
 Strand=Plus/Plus

Query  374  GAACCCTTCTTGATCCCTTTCGCTTCTGTTCCTTGGGTTGCaaggtt  420
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  319  GAACCCTTCTTGATCCCTTTCGCTTCTGTTCCTTGGGTTGCAAGGTT  365



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20832951594


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5