BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G27940.1 Length=860 Score E Sequences producing significant alignments: (Bits) Value Ahg900541 jgi|Araly1|900541|Al_scaffold_0004_1191 946 0.0 > Ahg900541 jgi|Araly1|900541|Al_scaffold_0004_1191 Length=705 Score = 946 bits (512), Expect = 0.0 Identities = 645/706 (91%), Gaps = 21/706 (3%) Strand=Plus/Plus Query 33 GCACCTACGCAAGCTTCTCCAGCTCTACCAAGCTTGTGGTGGCGAACAAGAGCTCACAA- 91 |||||| |||||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct 18 GCACCTCCGCAAGCTTCTCCAGCTCTACCAAGCTTGTAGTGGCGAACAAGAGCTCATAAC 77 Query 92 AAACCGTCCAAAACGTCACATCATCACCATTGACTCCAACGCCACCACCACAGCCACCTT 151 ||| ||||||||||| | || ||| |||| | ||||||||||||||| | ||||||| Sbjct 78 AAA-CGTCCAAAACG-C-CA-CAT---CATT-A--CCAACGCCACCACCAGAACCACCTT 127 Query 152 CGGCATTAGACTCCACTATGGCTCTCACCATCTTTATCCTCTTGGTTGCTCTCTTCTTCA 211 | || ||||||||| | |||||||| ||||||||| |||||||||||||||||||||||| Sbjct 128 CTGCGTTAGACTCCTCCATGGCTCTAACCATCTTTGTCCTCTTGGTTGCTCTCTTCTTCA 187 Query 212 TGGGTTTCTTTTCAGTTTAC-TTCCGCCACTTCGCAGACAGTTCAAGTTCAACGGTTGAT 270 |||||||||| || |||||| || | |||||||| || | | | |||||||||||| Sbjct 188 TGGGTTTCTTCTCCGTTTACATT-CACCACTTCGTAG--A--T-GA-TTCAACGGTTGAG 240 Query 271 ATTTCTTCCATGCCAAGAACAAGATCCTCTAGGATGTCTCCACGTCGCCTTTCCACATCC 330 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 241 ATTTCTTCCATACCAAGAACAAGATCCTCTAGGATGTCTCCACGTCGCCTTTCCACCTCC 300 Query 331 GTCGTCGTATCACGGCCGTATAGTTTCCGGAGGGGTCTTGATTCTCAGGCCGTTCGATCT 390 ||||| || |||||||||||||||| ||||||||| |||||||||||| ||||||||||| Sbjct 301 GTCGTTGTCTCACGGCCGTATAGTTACCGGAGGGGACTTGATTCTCAGACCGTTCGATCT 360 Query 391 CTGCCAGTGTACCGTTACACGAAAG-CAGCGAAGCAGCGGAACGAAGATTGCGTTATCTG 449 ||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 361 CTGCCAGTGTACCATTACACGAAAGCCA-CGAAGCAGCGGAACGAAGATTGCGTTATCTG 419 Query 450 CTTGAGCGATTTCGAAGAAGGTGAAACAGTTAAAGTGATACCACATTGTGGTCACGTGTT 509 |||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 420 CTTGAGTGAATTCGAAGAAGGTGAAACAGTTAAAGTGATACCACACTGTGGTCACGTGTT 479 Query 510 CCACGTAGATTGCGTTGACACGTGGCTGAGCTCATACGTAACATGTCCCTTGTGCCGGAG 569 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 CCACGTGGATTGCGTTGACACGTGGCTGAGCTCATACGTAACATGTCCCTTGTGCCGGAG 539 Query 570 TAACCAGCTGTTCTCGGATAAGGACTTGGGCATGCAAGAACCGCCTGATCAGGACTCGGC 629 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 540 CAACCAGCTGTTCTCGGATAAGGACTTGGGCATGCAAGAACCGCCTGATCAGGGCTCGTC 599 Query 630 AGAAGAACATGACACGTGTGATGGTGTGGACACTTGTGTAAGGAGGTGTAGTAGCTGTTC 689 ||||||||||||||||||||||| ||||||| ||||||| || ||||||||||||||||| Sbjct 600 AGAAGAACATGACACGTGTGATGTTGTGGACCCTTGTGTCAGAAGGTGTAGTAGCTGTTC 659 Query 690 AAGTTTGGGGCAGAGGACTGGATTGGAACGATCGCTGAGCCTCTGA 735 ||||||||||||||||||||||||||||| ||| |||| |||||| Sbjct 660 GAGTTTGGGGCAGAGGACTGGATTGGAACGGTCGTTGAGTCTCTGA 705 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31832635695 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5