BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27940.1
Length=860
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900541 jgi|Araly1|900541|Al_scaffold_0004_1191 946 0.0
> Ahg900541 jgi|Araly1|900541|Al_scaffold_0004_1191
Length=705
Score = 946 bits (512), Expect = 0.0
Identities = 645/706 (91%), Gaps = 21/706 (3%)
Strand=Plus/Plus
Query 33 GCACCTACGCAAGCTTCTCCAGCTCTACCAAGCTTGTGGTGGCGAACAAGAGCTCACAA- 91
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 18 GCACCTCCGCAAGCTTCTCCAGCTCTACCAAGCTTGTAGTGGCGAACAAGAGCTCATAAC 77
Query 92 AAACCGTCCAAAACGTCACATCATCACCATTGACTCCAACGCCACCACCACAGCCACCTT 151
||| ||||||||||| | || ||| |||| | ||||||||||||||| | |||||||
Sbjct 78 AAA-CGTCCAAAACG-C-CA-CAT---CATT-A--CCAACGCCACCACCAGAACCACCTT 127
Query 152 CGGCATTAGACTCCACTATGGCTCTCACCATCTTTATCCTCTTGGTTGCTCTCTTCTTCA 211
| || ||||||||| | |||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 128 CTGCGTTAGACTCCTCCATGGCTCTAACCATCTTTGTCCTCTTGGTTGCTCTCTTCTTCA 187
Query 212 TGGGTTTCTTTTCAGTTTAC-TTCCGCCACTTCGCAGACAGTTCAAGTTCAACGGTTGAT 270
|||||||||| || |||||| || | |||||||| || | | | ||||||||||||
Sbjct 188 TGGGTTTCTTCTCCGTTTACATT-CACCACTTCGTAG--A--T-GA-TTCAACGGTTGAG 240
Query 271 ATTTCTTCCATGCCAAGAACAAGATCCTCTAGGATGTCTCCACGTCGCCTTTCCACATCC 330
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 ATTTCTTCCATACCAAGAACAAGATCCTCTAGGATGTCTCCACGTCGCCTTTCCACCTCC 300
Query 331 GTCGTCGTATCACGGCCGTATAGTTTCCGGAGGGGTCTTGATTCTCAGGCCGTTCGATCT 390
||||| || |||||||||||||||| ||||||||| |||||||||||| |||||||||||
Sbjct 301 GTCGTTGTCTCACGGCCGTATAGTTACCGGAGGGGACTTGATTCTCAGACCGTTCGATCT 360
Query 391 CTGCCAGTGTACCGTTACACGAAAG-CAGCGAAGCAGCGGAACGAAGATTGCGTTATCTG 449
||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 361 CTGCCAGTGTACCATTACACGAAAGCCA-CGAAGCAGCGGAACGAAGATTGCGTTATCTG 419
Query 450 CTTGAGCGATTTCGAAGAAGGTGAAACAGTTAAAGTGATACCACATTGTGGTCACGTGTT 509
|||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 CTTGAGTGAATTCGAAGAAGGTGAAACAGTTAAAGTGATACCACACTGTGGTCACGTGTT 479
Query 510 CCACGTAGATTGCGTTGACACGTGGCTGAGCTCATACGTAACATGTCCCTTGTGCCGGAG 569
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CCACGTGGATTGCGTTGACACGTGGCTGAGCTCATACGTAACATGTCCCTTGTGCCGGAG 539
Query 570 TAACCAGCTGTTCTCGGATAAGGACTTGGGCATGCAAGAACCGCCTGATCAGGACTCGGC 629
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 540 CAACCAGCTGTTCTCGGATAAGGACTTGGGCATGCAAGAACCGCCTGATCAGGGCTCGTC 599
Query 630 AGAAGAACATGACACGTGTGATGGTGTGGACACTTGTGTAAGGAGGTGTAGTAGCTGTTC 689
||||||||||||||||||||||| ||||||| ||||||| || |||||||||||||||||
Sbjct 600 AGAAGAACATGACACGTGTGATGTTGTGGACCCTTGTGTCAGAAGGTGTAGTAGCTGTTC 659
Query 690 AAGTTTGGGGCAGAGGACTGGATTGGAACGATCGCTGAGCCTCTGA 735
||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 660 GAGTTTGGGGCAGAGGACTGGATTGGAACGGTCGTTGAGTCTCTGA 705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31832635695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5