BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G27960.1

Length=586
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg481712 jgi|Araly1|481712|fgenesh2_kg.4__772__AT2G27960.1          457    5e-128


> Ahg481712 jgi|Araly1|481712|fgenesh2_kg.4__772__AT2G27960.1
Length=472

 Score =  457 bits (247),  Expect = 5e-128
 Identities = 368/421 (87%), Gaps = 30/421 (7%)
 Strand=Plus/Plus

Query  135  AGAGAGAAATGGGTCAGATCCAATACTCCGAGAAATACTTCGATGACACTTTCGAATACA  194
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  82   AGAGAGAAATGGGTCAGATCCAATACTCTGAGAAATACTTCGATGACACTTTCGAATACA  141

Query  195  GGCACGTCGTTCTTCCTCCTGAAGTCGCTAAACTTCTTCCAAAGAATCGTCTTCTCTCCG  254
            ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct  142  GGCACGTTGTTCTTCCCCCTGAAGTCGCTAAGCTTCTTCCAAAGAATCGTCTTCTCTCCG  201

Query  255  AAAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGCGGATGGGTACATTACGCGGTTC  314
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct  202  AAAACGAATGGCGAGCGATAGGAGTGCAGCAAAGCCGTGGATGGGTACATTACGCGATTC  261

Query  315  ATCGACCTGAGCCGCACATAATGCTATTCAGGAGGCCTCTTAACTATCAGCAGCAGCAGG  374
            || | ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct  262  ATAGGCCTGAGCCGCATATAATGCTATTCAGGAGGCCTCTTAACTACCAGCAGCAGCAGG  321

Query  375  AGAATCAAGCTCAGAACATGCTTGTTAAGTGAATCATTATCATCACCTGAGTAAGAATGT  434
            ||||||| ||||| |||||||| |||||||||||| | ||   || | || |     | |
Sbjct  322  AGAATCAGGCTCAAAACATGCTCGTTAAGTGAATC-T-ATG--CAGC-GA-T-----TCT  370

Query  435  TATATGCAACAATTCTATGAGTATTGGTTTATGTTTCTTGTAAACATGGTTTGAATCTTT  494
             ||  | || | | |   || | ||     ||||||||||||||||||||||||| ||||
Sbjct  371  -AT--G-AATA-T-C---GA-T-TT-----ATGTTTCTTGTAAACATGGTTTGAACCTTT  414

Query  495  GTGGTTATGGATGAATATGTGAGAGTTGGTTTGTTGAACAACTTCTATGTAATGTTAGTC  554
            ||||| ||||||||||||||||   |||||  || ||||||||||||||| |||||||||
Sbjct  415  GTGGTCATGGATGAATATGTGAC--TTGGTG-GTGGAACAACTTCTATGTTATGTTAGTC  471

Query  555  T  555
            |
Sbjct  472  T  472



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21443441018


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5