BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G27970.1

Length=573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933236 jgi|Araly1|933236|scaffold_401224.1                        453    6e-127


> Ahg933236 jgi|Araly1|933236|scaffold_401224.1
Length=296

 Score =  453 bits (245),  Expect = 6e-127
 Identities = 277/292 (95%), Gaps = 3/292 (1%)
 Strand=Plus/Plus

Query  58   TGGGTGATTTAAGAAGATGGGTCAGATCCAGTACTCCGACAAATATTTCGATGATACTTT  117
            |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  8    TGGGTGATATAAGAAGATGGGTCAGATCCAGTACTCAGACAAATATTTCGATGATACTTT  67

Query  118  CGAATACAGGCACGTTGTACTTCCTCCGGAAGTTGCTAAGCTTTTACCTAAGAATCGTAT  177
             |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct  68   TGAATACAGGCACGTCGTACTTCCTCCGGAAGTTGCTAAGCTTTTACCGAAGAATCGAAT  127

Query  178  TCTTTCGGAAAGTGAATGGAGAGCCATCGGAGTGCAGCAAAGTCGTGGATGGGTTCATTA  237
            ||| || ||||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct  128  TCTCTCCGAAAGTGAATGGAGAGCTATAGGAGTGCAACAAAGTCGTGGATGGGTTCATTA  187

Query  238  CGCGATTCATCGTCCTGAGCCACATATCATGCTCTTTAGGAGGCCTCTTAACTACCAGCA  297
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  188  CGCGATTCATCGTCCTGAGCCACATATCATGCTCTTTAGGAGGCCTCTTAACTACCAGCA  247

Query  298  GGAGCACCAAGCTCAGATTGCTAAGTAGAAGAATTATGCAAAATTCTCCCTA  349
            ||||||||||||||||||||| ||||||||   |||||||||||||||||||
Sbjct  248  GGAGCACCAAGCTCAGATTGCGAAGTAGAA---TTATGCAAAATTCTCCCTA  296



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20947418361


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5