BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G27990.1
Length=1990
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481709 jgi|Araly1|481709|fgenesh2_kg.4__769__AT2G27990.1 2499 0.0
> Ahg481709 jgi|Araly1|481709|fgenesh2_kg.4__769__AT2G27990.1
Length=1992
Score = 2499 bits (1353), Expect = 0.0
Identities = 1812/2017 (90%), Gaps = 98/2017 (5%)
Strand=Plus/Plus
Query 21 tctctctctatctcCCACGGTCGGTTTACATACATATCTAAACTCACCACCGGAGCTCCG 80
||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1 TCTCTCTCTCTCTCCCACGGTCGGTTTACATACATATCTAAA--C-CCACCGGAGCTCCG 57
Query 81 ACGATTTTTCCGGCCACCTTCCGATCGAATATCAAAAGGTACATAA-AGATGGATATGAT 139
|||| ||| |||||||| || |||||||||||| |||||||| || |||||||||||||
Sbjct 58 ACGAGTTTCCCGGCCACTTTTCGATCGAATATC-GAAGGTACA-AAGAGATGGATATGAT 115
Query 140 AAAACC--A---G-AT-T--TTCAACAAATCCGAAGAGATAAGTTTAGAGTTGAGCAAAT 190
|||||| | | || | |||||||||||| ||||||||||||||||||||||||| |
Sbjct 116 AAAACCAGAGTTGCATGTAGTTCAACAAATCCAAAGAGATAAGTTTAGAGTTGAGCAACT 175
Query 191 GAATGATTTTCCCAACACTTGG-------A-C-T------CAGCAGCAGCATCAGAACAT 235
|||||||||||||||||||||| | | | ||||||||||||||||||||
Sbjct 176 GAATGATTTTCCCAACACTTGGAATCATCATCATCAGCAGCAGCAGCAGCATCAGAACAT 235
Query 236 CAGAATTCCCAACAACCTTGATTTGATTGGTATCTTACAGAACCAGATTTCCGTACCGGT 295
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 236 CAGAATTCCCAACAACCTTGATTTGATTGGTATTTTGCAGAACCAGATTTCTGTACCGGT 295
Query 296 TCAAACCGATTTGTATCAAGATTCTGCCGCAACCTTTATGAACATGCCTCAGTCGATACA 355
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 296 TCAGACCGATTTGTATCAAGATTCTACCGCAACCTTTATGAACATGCCTCAGTCGATACA 355
Query 356 TAGAGACCCACAAGGCCCTAGTAATTGGAGAATC-AGTGATTTGTCACAACCTAGTACCG 414
|||||||||||||||| ||||||||||||||| | |||||||||||||||| |||||||
Sbjct 356 TAGAGACCCACAAGGCTCTAGTAATTGGAGAA-CTAGTGATTTGTCACAACAGAGTACCG 414
Query 415 TGAA----TC-----------ACGGATATGATCAGGCTGGTATTAGGCCAAACAACGTTG 459
|||| || |||| |||||| |||||||||||||||||| ||||||||
Sbjct 415 TGAATTGTTCGGTGGTGAATTACGGGTATGATGAGGCTGGTATTAGGCCAAGCAACGTTG 474
Query 460 CAGATTTGTTGTCCGATCATTTCAGTTCTCGAAACCAAATATTGGACCGTCCTCTTTATG 519
||||||||| || ||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 475 GAGATTTGTTCTCAAATCATTTCAATTCTCGGAACCAAATATTGGACCGTCCTCTTTATG 534
Query 520 TCGGCCGGG-ACTCTATTCCTCAGTCTAGCATGATTAGGAGAAGTGAAGTTTCTTGTCTA 578
| ||||||| | | |||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 535 TTGGCCGGGAAAT-TATTGCTCAGTCTAGCATGACAAGGAGAAGTGAAGTTTCTTGTCTA 593
Query 579 GACGATAATCAAAAGGGTTGTGTAACGGTGGCTTGTTCGGGTACTGGTAATGAGATTTTA 638
|| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 594 GATGATAACCAGAAGGGTTGTGTAACGGTGGCTTGTTCGGGTACTGGTAATGAGATTCTA 653
Query 639 AGGAGCAGTTATGATCAAGGTTCTTCTTCTGGAAGTTACCGAGGAGAATTTTCGTTTCTC 698
| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 654 AAGAGCAGTTATGATCAAGGTTCTTCTTCTGGAAGTTACCGAGGAGAACTTGAGTTTCTC 713
Query 699 CCAAGTTTGGAGAATCAATCAGTTGCGCACAATGCAAGCAACTGGAACCACGGACCAG-T 757
||| ||||||||||||||| ||||||||||||||||||| | ||||||||| || ||| |
Sbjct 714 CCACGTTTGGAGAATCAATTAGTTGCGCACAATGCAAGCCAGTGGAACCAC-GAACAGCT 772
Query 758 GAATGTTACTGCCACTTCTCATACTAATAGTAAGAAAGGCTTTCCACTCTCACTTTTGTC 817
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 773 GAATTTTACTGCCACTTCTCATACTAATAG---GAAAGGCTTTCCACTCTCACTTTTTTC 829
Query 818 T-GATATCCCTCCATCTAGAGACGTTGGAAATGCAGCTGTTTTGTCAACAATGAATAT-- 874
| || || ||| |||||||||||||||||||||| ||||||| ||| || ||||||||
Sbjct 830 TGGA-ATACCTTCATCTAGAGACGTTGGAAATGCCGCTGTTTCGTCTACGATGAATATCC 888
Query 875 TC--AC-----GGCCCACTCGGGCCTTTCACGGGATATGCATCGATACTGAAGAGTTCGA 927
| || ||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 889 ACGGACATTTGGGCCCGCTCGGGCCTTTTACGGGATATGCATCGATACTGAAGAGCTCGA 948
Query 928 GGTTCTTGGAGCCGGCTCAGA-AAATGTTAGAAGAGTTTTGTATCTCTTATGCTTCAAAG 986
||||||| ||||||||||| | |||||||||||||||| |||||||||||||| ||||||
Sbjct 949 GGTTCTTAGAGCCGGCTCA-ACAAATGTTAGAAGAGTTCTGTATCTCTTATGCATCAAAG 1007
Query 987 ATTATTAGTAGAAGTGAATCTACTTCCATGGA-G--gatgatgatgatgatgatgatAAC 1043
|||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1008 ATTATTAGTAGAAGCGAATCTACTTCCATGGATGATGATGATGATGATGATGATGATAAC 1067
Query 1044 TTGTCAGGGTTTAGTAGTTCTTCTGAGCCATTAGAACCCAAGAATAGACTAAAGAAAGCA 1103
| ||||| |||||||||||||| ||||||| |||| ||||||||||||||||||| |||
Sbjct 1068 TCGTCAGTGTTTAGTAGTTCTTATGAGCCAGTAGAGCCCAAGAATAGACTAAAGAGGGCA 1127
Query 1104 AAACTTCTCTTTCTGCAAGAAGAGGTTTGCAAGTGGTACAAACTATATAATCATCAGTTG 1163
|||||||| ||||| ||||||||||||||||||||||||||| |||| ||||| || |||
Sbjct 1128 AAACTTCTTTTTCTACAAGAAGAGGTTTGCAAGTGGTACAAATTATACAATCACCATTTG 1187
Query 1164 CAAACAGTTATGTCTTCCTTCAATACAGTGGCTGGTCTAA-ACACCGCAACACCGTATAT 1222
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1188 CAAACAGTTATGTCTTCCTTCAATACAGTGGCTGGTCTAAGA-ACCGCAACACCGTATAT 1246
Query 1223 CTCGTTGGCTCTCAAACGGACTTC-ACGAAGTTTCAAGGCCCTTAGAACCGCAATAGCTG 1281
|||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| |||
Sbjct 1247 CTCGTTGGCTCTCAAACGGACTTCGA-GAAGTTTTAAGGCCCTTAGAACCGCAATATCTG 1305
Query 1282 AACATGTGAAGCAAATCTCAAGTCA-CTCATCAAACGGTAACAACAACAACCG-ATTCCA 1339
||||||||||||||||||||||||| || ||||| |||| ||||| |||| ||||||
Sbjct 1306 AACATGTGAAGCAAATCTCAAGTCACCT-ATCAAGCGGT---GACAAC-ACCGTATTCCA 1360
Query 1340 AAAGAGGCAAAGATCTTTGATTGGTAACAATGTCGGGTTTGAATCTCAACAACAACATAT 1399
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1361 AAAGAAACAAAGATCTTTGATTGGTCACAATGTCGGGTTTGAATCTCAACAACAACATAT 1420
Query 1400 CTGGAGGCCTCAAAGGGGATTGCCCGAACGTGCAGTGGCTGTTCTTAGAGCATGGCTCTT 1459
|||||||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 1421 GTGGAGGCCTCAAAGGGGATTGCCCGAACCCGCGGTGGCTGTTCTCCGAGCATGGCTCTT 1480
Query 1460 TGACCATTTTCTTCATCCGTACCCCACTGATTCTGATAAGCAGATGCTAGCCACTCAAAC 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TGACCATTTTCTTCATCCGTACCCCACTGATTCTGATAAGCAGATGCTAGCCACTCAAAC 1540
Query 1520 TGGTCTCTCTCGTAACCAGGTATCAAATTGGTTCATAAACGCCCGTGTGCGATTATGGAA 1579
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1541 CGGTCTCTCTCGTAACCAGGTATCAAATTGGTTCATAAACGCCCGTGTTCGATTATGGAA 1600
Query 1580 ACCTATGGTGGAAGAAATACACACACTTGAGACCAAAGCAATTAAAAATGCAGATACTAG 1639
||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1601 ACCAATGGTGGAAGAAATACACACACTTGAGACCAAAGCCATTAAAAATCCAGATACTAG 1660
Query 1640 TCACAACATTGAGCCATCAAATAGACCGAATACTGTTAGCAGT-C-C-GAGCCATGAACA 1696
||||||||| ||||||||||||||||||||||||||||| ||| | | ||||||||||||
Sbjct 1661 TCACAACATGGAGCCATCAAATAGACCGAATACTGTTAGTAGTACTCCGAGCCATGAACA 1720
Query 1697 AACGCTAACGGGCCTCTCCGGGACAAAACGGTCGAGGTTAGAGTACATGGACATGGTGGG 1756
|||| |||||| |||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1721 AACGTTAACGGACCTCTCTGGGACAAAACGGTCGAGGTTAGAGTACATGGACATGATGGG 1780
Query 1757 GTTCAATAGAGGGAACGTGTCACTCACGTTAGAGCTTAGGCGTGGTGTGGACAATGTTAT 1816
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1781 GTTCAATAGAGGGAACGTGTCACTCACTTTAGAGCTTAGGCGTGGTGTGGACAATGTAAT 1840
Query 1817 CCAAACGCAGACTCAG-----G-ATCATCAGTTTGGAACTGGA-AGCCAAATGTTTCATG 1869
|||||||||||| ||| | |||||||||||||||||||| | ||| ||||||||||
Sbjct 1841 CCAAACGCAGACGCAGACACAGGATCATCAGTTTGGAACTGGAGA-CCATATGTTTCATG 1899
Query 1870 ACTTTGTGGGTTGAAAATCC-TCTGCTTTTGTTTCACCTTTA-TGTATTTTGGGTAGAGT 1927
|||||||||||||||| || | |||||||||||||| || | ||||||||||||| |||
Sbjct 1900 ACTTTGTGGGTTGAAAC-CCGTTTGCTTTTGTTTCAC-TTAAATGTATTTTGGGTACAGT 1957
Query 1928 GAAAATAACAAAGTTGTCTTGAAATGGTTACTCCTAA 1964
|||| | ||||||||||||||| ||||||||| |||
Sbjct 1958 GAAAG-A-CAAAGTTGTCTTGAATTGGTTACTCTTAA 1992
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74809241180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5