BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G27990.1 Length=1990 Score E Sequences producing significant alignments: (Bits) Value Ahg481709 jgi|Araly1|481709|fgenesh2_kg.4__769__AT2G27990.1 2499 0.0 > Ahg481709 jgi|Araly1|481709|fgenesh2_kg.4__769__AT2G27990.1 Length=1992 Score = 2499 bits (1353), Expect = 0.0 Identities = 1812/2017 (90%), Gaps = 98/2017 (5%) Strand=Plus/Plus Query 21 tctctctctatctcCCACGGTCGGTTTACATACATATCTAAACTCACCACCGGAGCTCCG 80 ||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 1 TCTCTCTCTCTCTCCCACGGTCGGTTTACATACATATCTAAA--C-CCACCGGAGCTCCG 57 Query 81 ACGATTTTTCCGGCCACCTTCCGATCGAATATCAAAAGGTACATAA-AGATGGATATGAT 139 |||| ||| |||||||| || |||||||||||| |||||||| || ||||||||||||| Sbjct 58 ACGAGTTTCCCGGCCACTTTTCGATCGAATATC-GAAGGTACA-AAGAGATGGATATGAT 115 Query 140 AAAACC--A---G-AT-T--TTCAACAAATCCGAAGAGATAAGTTTAGAGTTGAGCAAAT 190 |||||| | | || | |||||||||||| ||||||||||||||||||||||||| | Sbjct 116 AAAACCAGAGTTGCATGTAGTTCAACAAATCCAAAGAGATAAGTTTAGAGTTGAGCAACT 175 Query 191 GAATGATTTTCCCAACACTTGG-------A-C-T------CAGCAGCAGCATCAGAACAT 235 |||||||||||||||||||||| | | | |||||||||||||||||||| Sbjct 176 GAATGATTTTCCCAACACTTGGAATCATCATCATCAGCAGCAGCAGCAGCATCAGAACAT 235 Query 236 CAGAATTCCCAACAACCTTGATTTGATTGGTATCTTACAGAACCAGATTTCCGTACCGGT 295 ||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| Sbjct 236 CAGAATTCCCAACAACCTTGATTTGATTGGTATTTTGCAGAACCAGATTTCTGTACCGGT 295 Query 296 TCAAACCGATTTGTATCAAGATTCTGCCGCAACCTTTATGAACATGCCTCAGTCGATACA 355 ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 296 TCAGACCGATTTGTATCAAGATTCTACCGCAACCTTTATGAACATGCCTCAGTCGATACA 355 Query 356 TAGAGACCCACAAGGCCCTAGTAATTGGAGAATC-AGTGATTTGTCACAACCTAGTACCG 414 |||||||||||||||| ||||||||||||||| | |||||||||||||||| ||||||| Sbjct 356 TAGAGACCCACAAGGCTCTAGTAATTGGAGAA-CTAGTGATTTGTCACAACAGAGTACCG 414 Query 415 TGAA----TC-----------ACGGATATGATCAGGCTGGTATTAGGCCAAACAACGTTG 459 |||| || |||| |||||| |||||||||||||||||| |||||||| Sbjct 415 TGAATTGTTCGGTGGTGAATTACGGGTATGATGAGGCTGGTATTAGGCCAAGCAACGTTG 474 Query 460 CAGATTTGTTGTCCGATCATTTCAGTTCTCGAAACCAAATATTGGACCGTCCTCTTTATG 519 ||||||||| || ||||||||| |||||| |||||||||||||||||||||||||||| Sbjct 475 GAGATTTGTTCTCAAATCATTTCAATTCTCGGAACCAAATATTGGACCGTCCTCTTTATG 534 Query 520 TCGGCCGGG-ACTCTATTCCTCAGTCTAGCATGATTAGGAGAAGTGAAGTTTCTTGTCTA 578 | ||||||| | | |||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 535 TTGGCCGGGAAAT-TATTGCTCAGTCTAGCATGACAAGGAGAAGTGAAGTTTCTTGTCTA 593 Query 579 GACGATAATCAAAAGGGTTGTGTAACGGTGGCTTGTTCGGGTACTGGTAATGAGATTTTA 638 || ||||| || ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 594 GATGATAACCAGAAGGGTTGTGTAACGGTGGCTTGTTCGGGTACTGGTAATGAGATTCTA 653 Query 639 AGGAGCAGTTATGATCAAGGTTCTTCTTCTGGAAGTTACCGAGGAGAATTTTCGTTTCTC 698 | |||||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 654 AAGAGCAGTTATGATCAAGGTTCTTCTTCTGGAAGTTACCGAGGAGAACTTGAGTTTCTC 713 Query 699 CCAAGTTTGGAGAATCAATCAGTTGCGCACAATGCAAGCAACTGGAACCACGGACCAG-T 757 ||| ||||||||||||||| ||||||||||||||||||| | ||||||||| || ||| | Sbjct 714 CCACGTTTGGAGAATCAATTAGTTGCGCACAATGCAAGCCAGTGGAACCAC-GAACAGCT 772 Query 758 GAATGTTACTGCCACTTCTCATACTAATAGTAAGAAAGGCTTTCCACTCTCACTTTTGTC 817 |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct 773 GAATTTTACTGCCACTTCTCATACTAATAG---GAAAGGCTTTCCACTCTCACTTTTTTC 829 Query 818 T-GATATCCCTCCATCTAGAGACGTTGGAAATGCAGCTGTTTTGTCAACAATGAATAT-- 874 | || || ||| |||||||||||||||||||||| ||||||| ||| || |||||||| Sbjct 830 TGGA-ATACCTTCATCTAGAGACGTTGGAAATGCCGCTGTTTCGTCTACGATGAATATCC 888 Query 875 TC--AC-----GGCCCACTCGGGCCTTTCACGGGATATGCATCGATACTGAAGAGTTCGA 927 | || ||||| ||||||||||| |||||||||||||||||||||||||| |||| Sbjct 889 ACGGACATTTGGGCCCGCTCGGGCCTTTTACGGGATATGCATCGATACTGAAGAGCTCGA 948 Query 928 GGTTCTTGGAGCCGGCTCAGA-AAATGTTAGAAGAGTTTTGTATCTCTTATGCTTCAAAG 986 ||||||| ||||||||||| | |||||||||||||||| |||||||||||||| |||||| Sbjct 949 GGTTCTTAGAGCCGGCTCA-ACAAATGTTAGAAGAGTTCTGTATCTCTTATGCATCAAAG 1007 Query 987 ATTATTAGTAGAAGTGAATCTACTTCCATGGA-G--gatgatgatgatgatgatgatAAC 1043 |||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| Sbjct 1008 ATTATTAGTAGAAGCGAATCTACTTCCATGGATGATGATGATGATGATGATGATGATAAC 1067 Query 1044 TTGTCAGGGTTTAGTAGTTCTTCTGAGCCATTAGAACCCAAGAATAGACTAAAGAAAGCA 1103 | ||||| |||||||||||||| ||||||| |||| ||||||||||||||||||| ||| Sbjct 1068 TCGTCAGTGTTTAGTAGTTCTTATGAGCCAGTAGAGCCCAAGAATAGACTAAAGAGGGCA 1127 Query 1104 AAACTTCTCTTTCTGCAAGAAGAGGTTTGCAAGTGGTACAAACTATATAATCATCAGTTG 1163 |||||||| ||||| ||||||||||||||||||||||||||| |||| ||||| || ||| Sbjct 1128 AAACTTCTTTTTCTACAAGAAGAGGTTTGCAAGTGGTACAAATTATACAATCACCATTTG 1187 Query 1164 CAAACAGTTATGTCTTCCTTCAATACAGTGGCTGGTCTAA-ACACCGCAACACCGTATAT 1222 |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 1188 CAAACAGTTATGTCTTCCTTCAATACAGTGGCTGGTCTAAGA-ACCGCAACACCGTATAT 1246 Query 1223 CTCGTTGGCTCTCAAACGGACTTC-ACGAAGTTTCAAGGCCCTTAGAACCGCAATAGCTG 1281 |||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| ||| Sbjct 1247 CTCGTTGGCTCTCAAACGGACTTCGA-GAAGTTTTAAGGCCCTTAGAACCGCAATATCTG 1305 Query 1282 AACATGTGAAGCAAATCTCAAGTCA-CTCATCAAACGGTAACAACAACAACCG-ATTCCA 1339 ||||||||||||||||||||||||| || ||||| |||| ||||| |||| |||||| Sbjct 1306 AACATGTGAAGCAAATCTCAAGTCACCT-ATCAAGCGGT---GACAAC-ACCGTATTCCA 1360 Query 1340 AAAGAGGCAAAGATCTTTGATTGGTAACAATGTCGGGTTTGAATCTCAACAACAACATAT 1399 ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1361 AAAGAAACAAAGATCTTTGATTGGTCACAATGTCGGGTTTGAATCTCAACAACAACATAT 1420 Query 1400 CTGGAGGCCTCAAAGGGGATTGCCCGAACGTGCAGTGGCTGTTCTTAGAGCATGGCTCTT 1459 |||||||||||||||||||||||||||| || ||||||||||| ||||||||||||| Sbjct 1421 GTGGAGGCCTCAAAGGGGATTGCCCGAACCCGCGGTGGCTGTTCTCCGAGCATGGCTCTT 1480 Query 1460 TGACCATTTTCTTCATCCGTACCCCACTGATTCTGATAAGCAGATGCTAGCCACTCAAAC 1519 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1481 TGACCATTTTCTTCATCCGTACCCCACTGATTCTGATAAGCAGATGCTAGCCACTCAAAC 1540 Query 1520 TGGTCTCTCTCGTAACCAGGTATCAAATTGGTTCATAAACGCCCGTGTGCGATTATGGAA 1579 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1541 CGGTCTCTCTCGTAACCAGGTATCAAATTGGTTCATAAACGCCCGTGTTCGATTATGGAA 1600 Query 1580 ACCTATGGTGGAAGAAATACACACACTTGAGACCAAAGCAATTAAAAATGCAGATACTAG 1639 ||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 1601 ACCAATGGTGGAAGAAATACACACACTTGAGACCAAAGCCATTAAAAATCCAGATACTAG 1660 Query 1640 TCACAACATTGAGCCATCAAATAGACCGAATACTGTTAGCAGT-C-C-GAGCCATGAACA 1696 ||||||||| ||||||||||||||||||||||||||||| ||| | | |||||||||||| Sbjct 1661 TCACAACATGGAGCCATCAAATAGACCGAATACTGTTAGTAGTACTCCGAGCCATGAACA 1720 Query 1697 AACGCTAACGGGCCTCTCCGGGACAAAACGGTCGAGGTTAGAGTACATGGACATGGTGGG 1756 |||| |||||| |||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 1721 AACGTTAACGGACCTCTCTGGGACAAAACGGTCGAGGTTAGAGTACATGGACATGATGGG 1780 Query 1757 GTTCAATAGAGGGAACGTGTCACTCACGTTAGAGCTTAGGCGTGGTGTGGACAATGTTAT 1816 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 1781 GTTCAATAGAGGGAACGTGTCACTCACTTTAGAGCTTAGGCGTGGTGTGGACAATGTAAT 1840 Query 1817 CCAAACGCAGACTCAG-----G-ATCATCAGTTTGGAACTGGA-AGCCAAATGTTTCATG 1869 |||||||||||| ||| | |||||||||||||||||||| | ||| |||||||||| Sbjct 1841 CCAAACGCAGACGCAGACACAGGATCATCAGTTTGGAACTGGAGA-CCATATGTTTCATG 1899 Query 1870 ACTTTGTGGGTTGAAAATCC-TCTGCTTTTGTTTCACCTTTA-TGTATTTTGGGTAGAGT 1927 |||||||||||||||| || | |||||||||||||| || | ||||||||||||| ||| Sbjct 1900 ACTTTGTGGGTTGAAAC-CCGTTTGCTTTTGTTTCAC-TTAAATGTATTTTGGGTACAGT 1957 Query 1928 GAAAATAACAAAGTTGTCTTGAAATGGTTACTCCTAA 1964 |||| | ||||||||||||||| ||||||||| ||| Sbjct 1958 GAAAG-A-CAAAGTTGTCTTGAATTGGTTACTCTTAA 1992 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74809241180 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5