BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28010.1
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900531 jgi|Araly1|900531|Al_scaffold_0004_1181 1487 0.0
Ahg900505 jgi|Araly1|900505|Al_scaffold_0004_1155 900 0.0
> Ahg900531 jgi|Araly1|900531|Al_scaffold_0004_1181
Length=2136
Score = 1487 bits (805), Expect = 0.0
Identities = 968/1047 (92%), Gaps = 10/1047 (1%)
Strand=Plus/Plus
Query 150 CGGATCATCACCTTACGCTAATACCGTCTTTGATAACTCCGTGTATCTAATGAAACTACA 209
||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||
Sbjct 1095 CGGATCATCACCTTATGCGGATACCGTCTTTGATAACTCAATGTATCTAATGAAACTACA 1154
Query 210 AGTCGGTACTCCTCCTTTCGAGATCCAAGCTATCATAGACACTGGAAGCGAGATCACATG 269
||||||||||||||||||||||||| ||||| |||||||||| ||||| |||||||||||
Sbjct 1155 AGTCGGTACTCCTCCTTTCGAGATCGAAGCTGTCATAGACACCGGAAGTGAGATCACATG 1214
Query 270 GACACAATGTTTGCCTTGTGTTCACTGCTACGAACAAAACGCTCCTATATTCGACCCTTC 329
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1215 GACACAATGTTTGCCTTGTGTTCACTGCTACAAACAAAACGCTCCCATATTCGACCCTTC 1274
Query 330 GAAATCCTCAACCTTCAAGGAGAAAAGATGCGATGGCCACTCTTGTCCTTACGAGGTAGA 389
||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||| ||
Sbjct 1275 GAAATCCTCGACCTTCAAGGAGAAAAGATGCCATGACCACTCTTGTCCTTACGAGGTTGA 1334
Query 390 TTACTTCGACCATACCTACACCATGGGAACCTTAGCAACCGAGACAATCACACTCCACTC 449
|||||||||| | |||||||||| |||||||||||| ||||| ||| ||||| |||| ||
Sbjct 1335 TTACTTCGACAAAACCTACACCAAGGGAACCTTAGCGACCGACACAGTCACAATCCATTC 1394
Query 450 CACTTCAGGGGAACCCTTTGTGATGCCTGAAACCATTATTGGTTGTGGCCACAACAACTC 509
||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||
Sbjct 1395 CACTTCAGGGGAACCCTTTGTGATGGCTGAAACTATTATTGGTTGTGGCCGCAACAACTC 1454
Query 510 ATGGTTTAAACCTAGTTTTTCGGGCATGGTTGGTCTAAACTGGGGACCTTCATCGCTCAT 569
|||||||| |||||||||| |||| | ||||||||||| |||||||||| |||||||||
Sbjct 1455 ATGGTTTAGACCTAGTTTTGAGGGCTTTGTTGGTCTAAATTGGGGACCTTTATCGCTCAT 1514
Query 570 CACTCAGATGGGCGGTGAGTACCCAGGTTTGATGTCTTACTGCTTTT-CTGGTCAA-GGA 627
|||||||||||||||||||||||||||||||||||||||||| |||| ||||| || |||
Sbjct 1515 CACTCAGATGGGCGGTGAGTACCCAGGTTTGATGTCTTACTG-TTTTGCTGGT-AACGGA 1572
Query 628 ACTAGTAAGATCAATTTTGGAGCGAATGCTATTGT-GGCAGGAGATGGGGTTGTATCAAC 686
||||||||||||||||||||| | || |||||||| || ||||| |||||||||||||||
Sbjct 1573 ACTAGTAAGATCAATTTTGGAACAAACGCTATTGTCGG-AGGAGGTGGGGTTGTATCAAC 1631
Query 687 CACTATGTTTATGACGACGGCGAAACCAGGTTTCTATTACCTAAACCTAGACGCGGTCAG 746
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1632 CACTATGTTTGTCACGACGGCGAAACCAGGTTTCTATTACCTAAACCTAGACGCGGTCAG 1691
Query 747 CGTTGGGAACACCCGCATTGAGACAATGGGGACAACGTTTCATGCCTTAGAAGGGAACAT 806
||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 1692 CGTTGGGGACACCCGCATTGAGACACTGGGGACACCGTTTCATGCCTTAAAAGGGAACAT 1751
Query 807 AGTTATAGACTCTGGAACCACTCTCACGTACTTTCCAGTGAGCTACTGCAATCTAGTAAG 866
||| |||||||||||||||||||||||||||||||| | |||||||||||| ||||| ||
Sbjct 1752 AGTGATAGACTCTGGAACCACTCTCACGTACTTTCCTGAGAGCTACTGCAACCTAGTGAG 1811
Query 867 ACAGGCAGTGGAACACGTTGTGACAGCGGTTCGAGCAGCTGACCCGACCGGCAATGACAT 926
| ||||||||||||| |||||||||||||||| |||||| |||||||||||||||||| |
Sbjct 1812 AGAGGCAGTGGAACATGTTGTGACAGCGGTTCCAGCAGCAGACCCGACCGGCAATGACCT 1871
Query 927 GCTTTGCTACAACTCGGACACCATAGATATCTTTCCGGTGATCACAATGCATTTTTCTGG 986
|||||||||| | || |||||| || ||||||||||||||||||||||||||||||||
Sbjct 1872 GCTTTGCTACTATTCAAACACCACCGAGATCTTTCCGGTGATCACAATGCATTTTTCTGG 1931
Query 987 CGGTGTTGATCTTGTCTTGGATAAGTACAATATGTATATGGAATCGA-ATAACGGAGGAG 1045
||||| |||||||||||||||||||||||||||| ||||||||| | ||| |||||||
Sbjct 1932 CGGTGCGGATCTTGTCTTGGATAAGTACAATATGTTTATGGAATC-ATATAGCGGAGGAC 1990
Query 1046 TTTTTTGTCTGGCTATTATATGTAATAGTCCAACACAAGAAGCTATCTTTGGGAACAGAG 1105
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1991 TTTTTTGTCTGGCTATTATATGTAATAACCCAACACAAGAAGCTATCTTTGGGAACAGAG 2050
Query 1106 CACAGAACAATTTCTTGGTGGGTTATGATTCTTCTTCACTTCTGGTTTCTTTCA-GTCCC 1164
||||||||||||||||||||||||||||| |||||||||| ||||||||||||| | |||
Sbjct 2051 CACAGAACAATTTCTTGGTGGGTTATGATCCTTCTTCACTGCTGGTTTCTTTCAAG-CCC 2109
Query 1165 ACCAATTGTTCTGCATTGTGGAATTGA 1191
|||||||||||||||||||||||||||
Sbjct 2110 ACCAATTGTTCTGCATTGTGGAATTGA 2136
Score = 652 bits (353), Expect = 0.0
Identities = 444/488 (91%), Gaps = 6/488 (1%)
Strand=Plus/Plus
Query 665 CAGGAGATGGGGTTGTATCAACCACTATGTTTATGACGACGGCGAAACCAGGTTTCTATT 724
|||||||||||||||||||||| ||||||||| | ||| ||||||| |||| |||||
Sbjct 605 CAGGAGATGGGGTTGTATCAACTACTATGTTTGCCAAGACCGCGAAACGAGGTCACTATT 664
Query 725 ACCTAAACCTAGACGCGGTCAGCGTTGGGAACACCCGCATTGAGACAATGGGGACAACGT 784
||||||||||||| ||||||||||||||| ||||||||||||||||| |||| ||| | |
Sbjct 665 ACCTAAACCTAGATGCGGTCAGCGTTGGGGACACCCGCATTGAGACAGTGGGAACACCCT 724
Query 785 TTCATGCCTTAGAA-GGGAACATAGTTATAGACTCTGGAACCACTCTCACGTACTTTCCA 843
||||||||||| || ||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 725 TTCATGCCTTA-AATGGGAACATAGTGATAGACTCTGGAACCCCTCTCACGTACTTTCCT 783
Query 844 GTGAGCTACTGCAATCTAGTAAGACAGGCAGTGGAACACGTTGTGACAGCGGTTCGAGCA 903
|||||||||||||| ||||||||| |||||||||||| ||||||||||||| ||||| |
Sbjct 784 GTGAGCTACTGCAACCTAGTAAGAAAGGCAGTGGAACGTGTTGTGACAGCGGATCGAGTA 843
Query 904 GCTGACCCGA-CCGGCAATGACATGCTTTGCTACAACTCGGACACCATAGATATCTTTCC 962
|||||||||| || |||||||||||||||||||| | || |||||||||| ||||||||
Sbjct 844 GCTGACCCGAGCC-GCAATGACATGCTTTGCTACTATTCAAACACCATAGAGATCTTTCC 902
Query 963 GGTGATCACAATGCATTTTTCTGGCGGTGTTGATCTTGTCTTGGATAAGTACAATATGTA 1022
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 903 GGTGATCACAGTGCATTTTTCTGGCGGTGCGGATCTTGTCTTGGATAAGTACAATATGTA 962
Query 1023 TATGGAATCGAATA-ACGGAGGAGTTTTTTGTCTGGCTATTATATGTAATAGTCCAACAC 1081
| |||||| ||||| | ||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 963 TTTGGAATTGAATAGA-GGAGGAGTTTTCTGTCTGGCTATTATATGTAATAATCCAACAC 1021
Query 1082 AAGAAGCTATCTTTGGGAACAGAGCACAGAACAATTTCTTGGTGGGTTATGATTCTTCTT 1141
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 AAGTAGCTATCTTTGGGAACAGAGCACAGAACAATTTCTTGGTGGGTTATGATTCTTCTT 1081
Query 1142 CACTTCTG 1149
|||| |||
Sbjct 1082 CACTGCTG 1089
Score = 603 bits (326), Expect = 1e-171
Identities = 523/615 (85%), Gaps = 26/615 (4%)
Strand=Plus/Plus
Query 1 ATGTCTCTTGCAACCACAATAATCGTTCTTTTTCTTCAAATCAGTT-TATGTTTTCTCTT 59
|||||||||||||||||||| |||| | | ||||||||||||| || || |||||||||
Sbjct 1 ATGTCTCTTGCAACCACAATGATCGCTATCTTTCTTCAAATCA-TTACATATTTTCTCTT 59
Query 60 CACGACCACAGCCTCACCACCTCACGGCTTCACCATGGACTTGATCCACCGTCGCTCCAA 119
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 60 TACCACCACAGCCTCACCACCTCACGGCTTCACCATCGACTTGATCCACCGTCGCTCTAA 119
Query 120 TGC-T-T-CTTCTCGAGTCTCTAATACTCAGTCCGGATCATCACCTTACGCTAATACCGT 176
||| | | ||||||||||||||| ||||||| |||||||| | | ||| ||| |||||||
Sbjct 120 TGCATCTTCTTCTCGAGTCTCTATTACTCAGGCCGGATCA-C-C-TTATGCTGATACCGT 176
Query 177 CTTTGATAACTCCGTGTATCTAATGAAACTACAAGTCGGTACTCCTCCTTTCGAGATCCA 236
|||||||| || || ||| || |||||||||||| ||||||||||||||||||||||| |
Sbjct 177 CTTTGATACCTACGAGTACCTGATGAAACTACAAATCGGTACTCCTCCTTTCGAGATCGA 236
Query 237 AGCTATCATAGACACTGGAAGCGAGATCACATGGACACAATGTTTGCCTTGTGTTCACTG 296
||| || ||||||| |||||| || ||| |||||||||||||||||||||| |||||||
Sbjct 237 AGCGGTCTTAGACACAGGAAGCCAGCTCATATGGACACAATGTTTGCCTTGTCTTCACTG 296
Query 297 CTACGAACAAAACGCTCCTATATTCGACCCTTCGAAATCCTCAACCTTCAAGGAGAAAAG 356
|||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||| |||
Sbjct 297 CTACGACCAAAAGGCTCCCATATTCGACCCTTCGAAATCCTCAACCTTCAAAGAGACAAG 356
Query 357 ATGCGA------TGGCCACTCTTGTCCTTACGAGGTAGAT-TACTTCGACCATACCTACA 409
|||| | || |||||||||||||||| || | | | ||| |||| | | |||||
Sbjct 357 ATGCAACACACCTGACCACTCTTGTCCTTACAAGCTTG-TCTACGACGACAAAAGCTACA 415
Query 410 CC-ATGGGAACCTTAGCAACCGAGACAATCACACTCCACTCCACTTCAGGGGAACCCTTT 468
|| | |||||||||||| ||||||||| ||||| |||| ||||||||||| | ||||||
Sbjct 416 CCCA-GGGAACCTTAGCGACCGAGACAGTCACAATCCATTCCACTTCAGGAGTTCCCTTT 474
Query 469 GTGATGCCTGAAACCATTATTGGTTGTGGCCACAACAACTCA---T--GG-TTTAAACCT 522
|||||||||||||| |||||||||||| ||| |||||||||| | || |||| |||
Sbjct 475 GTGATGCCTGAAACAATTATTGGTTGTAGCCGCAACAACTCAGGGTCAGGGTTTAGACCG 534
Query 523 AGTTTTTCGGGCATGGTTGGTCTAAACTGGGGACCTTCATCGCTCATCACTCAGATGGGC 582
|||| ||||||||| |||||||||| | |||| ||| ||| ||||||| ||||||||||
Sbjct 535 AGTTCTTCGGGCATTGTTGGTCTAAGCAGGGGTTCTTTATCCCTCATCAGTCAGATGGGC 594
Query 583 GGTG-AGTACCCAGG 596
|| | | ||||||||
Sbjct 595 GGGGCA-TACCCAGG 608
> Ahg900505 jgi|Araly1|900505|Al_scaffold_0004_1155
Length=1194
Score = 900 bits (487), Expect = 0.0
Identities = 981/1212 (81%), Gaps = 63/1212 (5%)
Strand=Plus/Plus
Query 22 ATCGTTCTTTTTCTTCAAATCAGTT-TATGTTTTCTCTTCA-CGACCACAGCCTCACCAC 79
|||||||||||||||||||||| || |||||||||||||| || |||| |||||| |||
Sbjct 4 ATCGTTCTTTTTCTTCAAATCA-TTACATGTTTTCTCTTCACCG-CCACTGCCTCATCAC 61
Query 80 CTCACGGCTTCACCATGGACTTGATCCACCGTCGCTCCAA-T--GCTTCTTCTCGAGTCT 136
|||||||||||||||| ||||||||||| ||||| || || | ||||||||||| | |
Sbjct 62 CTCACGGCTTCACCATTGACTTGATCCAGCGTCGTTCGAATTCATCTTCTTCTCGACTGT 121
Query 137 CTAATACTCAG-T-C-CGGATCATCACCTTACGCTAATACCGTCTTTGATAACTCCGTGT 193
| || | |||| | | |||| ||||||||||||| | || ||||||||| || | | |
Sbjct 122 CCAAAAATCAGTTGCTCGGAGCATCACCTTACGCCGACACTGTCTTTGATTACAGCATCT 181
Query 194 ATCTAATGAAACTACAAGTCGGTACTCCTCCTTTCGAGATCCAAGCTA-TCATAGACACT 252
||||||||| ||||||| ||||||||||||||||||||||| ||| | ||||||||
Sbjct 182 ATCTAATGAGACTACAACTCGGTACTCCTCCTTTCGAGATCGTAGC-AGAGATAGACACA 240
Query 253 GGAAGCGAGATCACATGGACACAATGTTTGCCTTGTGTTCACTGCTACGA-ACAAAACGC 311
||||| || | | ||||||||||||| |||||||| | |||||||| | |||| |||
Sbjct 241 GGAAGTGACCTTATATGGACACAATGTATGCCTTGTCCTAACTGCTAC-ACACAATTCGC 299
Query 312 TCCTATATTCGACCCTTCGAAATCCTCAACCTTCAAGGAGAAAAGATGCGATGGCCACTC 371
|||||||||||||||||| ||||| ||||||||||| || ||||||||| |||| ||||
Sbjct 300 TCCTATATTCGACCCTTCTAAATCTTCAACCTTCAAAGAAAAAAGATGCCATGGGAACTC 359
Query 372 TTGTCCTTACGAGGTAGAT-TACTTC-GACCATACCTACACCATGGGAACCTTAGCAACC 429
||||||||||||| | || ||| | ||| | | ||| ||| ||||| ||| ||||||
Sbjct 360 TTGTCCTTACGAGAT-TATCTAC-GCGGACGAAAGCTATTCCACGGGAATCTTGGCAACC 417
Query 430 GAGACAATCACACTCCACTCCACTTCAGGGGAACCCTTTGTGATGCCTGAAACCAT-TAT 488
||||| ||||| |||| ||||||||||| || |||||||||||| |||||| ||| ||
Sbjct 418 GAGACGGTCACAATCCAGTCCACTTCAGGAGAGCCCTTTGTGATGGCTGAAA-CATCCAT 476
Query 489 TGGTTGTGG-C-C-ACAA--C-AA-CTCAT--------GGTTTAAACCTAGTTTTTCGGG 533
||| ||||| | | |||| | || ||||| ||| | | | |||| ||||||
Sbjct 477 TGGGTGTGGCCTCAACAACTCAAACCTCATGACACCAGGGTATGCAGCGAGTTCTTCGGG 536
Query 534 CATGGTTGGTCTAAAC-TGGGGACCTTCATCGCTCATCACTCAGATGGGCGGTGAGTA-C 591
||| |||||||||||| | ||||||||| ||||| ||| ||||||||| | || | |
Sbjct 537 CATTGTTGGTCTAAACAT-GGGACCTTCGTCGCTTATCTCTCAGATGGAC-TTGCCCATC 594
Query 592 CCAGGT-TTGATGTCTTACTGCTTTTCTGGTCAAGGAACTAGTAAGATCAATTTTGGAGC 650
|||||| || || ||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 595 CCAGGTCTT-ATATCTTACTGCTTTTCTAGTCAAGGAACTAGTAAGATCAATTTTGGAAC 653
Query 651 GAATGCTATTGTGGCAGGAGATGGGGTTGTATCAACC-ACTATGTTTATGACGACGGCGA 709
|||||| ||||||||||||||||| ||| || || | ||||||||| | || |
Sbjct 654 AAATGCTGTTGTGGCAGGAGATGGGACGGTAGCAGCCGA-TATGTTTATCAAGAAAGATC 712
Query 710 AACCAGGTTTCTATTACCTAAACCTAGACGCGGTCAGCGTTGGGAACACCCGCATTGAGA 769
|||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 713 AACC---TTTCTATTACCTAAACCTAGACGCGGTCAGCGTTGGGGACAAACGCATTGAGA 769
Query 770 CAATGGGGACAACGTTTCATGCCTTAGAAGGGAACATAGTTATAGACTCTGGAACCACTC 829
|| |||||||| ||||||||||| ||| |||||||| ||||||||||||||||||||
Sbjct 770 CATTGGGGACACCGTTTCATGCCCAAGACGGGAACATTTTTATAGACTCTGGAACCACT- 828
Query 830 T-CACGTACTTTCC-AGTGAGCTACTGCAATCTAGTAAGACAGGCAGTGGAA-CACGT-T 885
| ||||||||| || | |||||||||||| ||||| || ||||||||| || || |
Sbjct 829 TACACGTACTTACCTAC-GAGCTACTGCAACCTAGTGAGGGAGGCAGTGGCGGCAAGTGT 887
Query 886 -GTGACAGCGGTTCGAGCAGCTGACCCGACCGGCAATGA-CATGCTTTGCTACAACTCGG 943
||| ||||| || || | ||||||||| | | | || | ||||||||||||| | ||
Sbjct 888 TGTGGCAGCGAATCAAGTACCTGACCCGAGCAGTGA-GAACTTGCTTTGCTACAATTGGG 946
Query 944 ACACCATAGATATCTTTCCGGTGATCACAATGCATTTTTCTGGCGGTGTTGATCTTGTCT 1003
||||||| || |||||||||||||||||| |||||||| ||||||||| ||||||||||
Sbjct 947 ACACCATGGAGATCTTTCCGGTGATCACATTGCATTTTGCTGGCGGTGCGGATCTTGTCT 1006
Query 1004 TGGATAAGTACAATATGTATATGGAATCGAATAACGG-AGGAGTTTTTTGTCTGGCTATT 1062
|||||||||||||||||||| | ||| ||| |||||| |||| |||||||| ||||||
Sbjct 1007 TGGATAAGTACAATATGTATGTCGAAACGA-TAACGGGAGGAACCTTTTGTCTAGCTATT 1065
Query 1063 ATATGTAAT-AGTCCAACACAAGAA-GCTATCTTTGGGAACAGAGCACAGAACAATTTCT 1120
||| | | ||| || | | |||||||||||||| ||||| || |||||||| |
Sbjct 1066 GGGTGTGTTGA-TCCGTCA-ATGCCTGCTATCTTTGGGAATAGAGCGCATAACAATTTAT 1123
Query 1121 TGGTGGGTTATGATTCTTCTTCACTTC-TGGTTTCTTTCAGTCCCACCAATTGTTCTGCA 1179
||||||||||||||||||| || || || ||||||| |||||||| ||||||||||||
Sbjct 1124 TGGTGGGTTATGATTCTTCAACA-TTAGTGATTTCTTTTAGTCCCACTAATTGTTCTGCA 1182
Query 1180 TTGTGGAATTGA 1191
| |||| ||||
Sbjct 1183 CTATGGAGTTGA 1194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44451321222
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5