BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28050.1
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933228 jgi|Araly1|933228|scaffold_401216.1 1921 0.0
> Ahg933228 jgi|Araly1|933228|scaffold_401216.1
Length=1498
Score = 1921 bits (1040), Expect = 0.0
Identities = 1279/1395 (92%), Gaps = 13/1395 (1%)
Strand=Plus/Plus
Query 1 ATGACTCCGCAATGCTTCTTGAAAACCCTGAAGACAGCTAAACAAACTTATACATTCTCA 60
||||||| |||| |||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 27 ATGACTCTGCAAAGCTTCTTGAAAACCCTAAAGACAGCTAAACAAACTTATCCATTCTCA 86
Query 61 ATCTACAAGCTTCTCCTCAATTCTTCCTCTATAAACCAAACTCTTGCTTCACCGGAAACA 120
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 87 ATCTACAAGCTCCTCCTCAATTCTTCCTCTATAAACCAAACTCTTGATTCACCGGAAA-A 145
Query 121 -CCACTCTCCGATCTCAATCTCTCCACTCTT-CGCCGTATTTTATCAGACCCAGATATCA 178
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 146 GCCACTCTCCGATCTCAATCTCTCCAC-CTTCCGCCGTATTTTATCAGACCCAGATATCA 204
Query 179 AATCCTGGAAATGCATCTCCCTTTTCAATTTCATCCTGGAGAACCCATCTCTTTTCTCAT 238
|||| ||||||||||||||||| |||||||||||| | || |||||||||||||||||||
Sbjct 205 AATCATGGAAATGCATCTCCCTCTTCAATTTCATCTTCGAAAACCCATCTCTTTTCTCAT 264
Query 239 TCCAACCTGATCTCAGAACTCACTTGTCTCTCACTTTCCGTGTCTTGTCGGAGAGGAGAT 298
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 265 TCCAACCTGATCTCAGAACTCACTTGTCTCTCACTTCCCGTGTTTTGTCGGAGAGGAGAT 324
Query 299 TCTCATATGCGAAAGAACTCTTGAAGCCTGTGGCTATTGATGACATTCTCAGGTACCCTT 358
||||| ||||||||||||||||||| | |||||||||||| |||||||||||||||||||
Sbjct 325 TCTCAGATGCGAAAGAACTCTTGAAACTTGTGGCTATTGACGACATTCTCAGGTACCCTT 384
Query 359 TTAATGTAATCGTCTCTAGCGTTATTGATGAATGTGGTTGTGAGAAGAAAGTTGTTGGGA 418
|||| ||||||||||||||| || ||||||| ||||||||||||| || |||||||| |
Sbjct 385 TTAAAGTAATCGTCTCTAGCTTTGTTGATGAGTGTGGTTGTGAGACGAGAGTTGTTGCTA 444
Query 419 GGTTCTTTAATTCGATGATTATGGTTTATTCAGACAATGGAAAATTT-AGTGAAGTTGTT 477
||||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||
Sbjct 445 GGTTCTTTAATTCGATGCTTATGGTTTATTCAGACAATGGAAAGTTTGA-TGAAGTTGTT 503
Query 478 GAGGTTTTTGAGTATATGAAGAACAATGAAGTTAAGATTGATGAAAAGACTTGTACTTTG 537
||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||
Sbjct 504 GAGGTTTTTGAGTATATGAAGAACAATGAGGTTAAGATTGATGAAAAGGCATGTACTTTG 563
Query 538 CATTTGTTGAATCTCAAGAGATGTGATCAGATGGAACTAGCTAGAGATTTCTTTAGTCTA 597
||| ||||||||||||||| |||||||||||||||| ||||||||||||||||| || ||
Sbjct 564 CATCTGTTGAATCTCAAGAAATGTGATCAGATGGAATTAGCTAGAGATTTCTTTCGTTTA 623
Query 598 ATGGTTGAGTCAGGGATTGATGTTGT-TACTGTGTACTCTTTAACTGTTGTTGTTACGGT 656
||||||||||||||| | |||||||| | ||||||||||||| || ||||||||||| |
Sbjct 624 ATGGTTGAGTCAGGGCTAGATGTTGTAT-CTGTGTACTCTTTGACGGTTGTTGTTACCGC 682
Query 657 GTTGTGTTGCAATGGGGAGATTACAAGAGCAAGAGAATTGGTGGAGGAGATGGGGTTGGT 716
||||||||||||||| ||||| || |||| |||||||||||||||||||||| |||||
Sbjct 683 GTTGTGTTGCAATGGAGAGATCACGAGAGGAAGAGAATTGGTGGAGGAGATGCTTTTGGT 742
Query 717 TAAAGGGGTTAAGGCTAATATTGTTACGTTTAAGTCGATGATTGGTTGTTGTGTGAAAAG 776
||||||| | ||| |||||||||||||||||||||||||||| | ||||||||| |||||
Sbjct 743 TAAAGGGATCAAGCCTAATATTGTTACGTTTAAGTCGATGATAGATTGTTGTGTCAAAAG 802
Query 777 ATGGGATTTTGAAGAGTTGGATTTGGTTCTTAA-GTTAATGGAGAAGGAAAGTGTGATGC 835
||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||
Sbjct 803 ATGGGATTTTGAAGAGTTGGATTTGATT-TTAAAGTTAATGGAGAAGGAAAGTGTGATGC 861
Query 836 TTGATCTCGATAGTTACAAGGTTTTGATTGATGGGTTTACTAGTTATGGTAAGGTTGAAG 895
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 862 TTGATCTTGATAGTTACAAGGTTTTGATTGATGGGTTTACTAGTTATGGTAAGCTTGAAG 921
Query 896 AAGCAGAGAGGTTGGTTTTGA-TGATGCATGATAAGAAGTTAAGAGTGGAGAGTTATCTG 954
|||||||||||||||||| || | |||||||||||||||||||||||||||| |||||||
Sbjct 922 AAGCAGAGAGGTTGGTTTCGACT-ATGCATGATAAGAAGTTAAGAGTGGAGACTTATCTG 980
Query 955 TATAATTTGATTATGAATGGGTACTCTCGGTTTGGACTAGTGGAGAAAGTGATTGAACTA 1014
||||||||||| ||||||||||| | |||||| |||||||||||||||| | ||||||||
Sbjct 981 TATAATTTGATCATGAATGGGTATTGTCGGTTCGGACTAGTGGAGAAAGCGTTTGAACTA 1040
Query 1015 TATAGCGAAATGAGTTCTCGAGGTGTTACTCCGAACAAAGATACGTATTGGGTGTTGATG 1074
| ||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 1041 CACAGCGAAATGAGTTCTCGAGGTGTTACTCCCAATAAGGATACGTATTGGGTGTTGATG 1100
Query 1075 AATGGACTTTGCAAAGCTGGGAAAGTTTGTGAAGCGATGAGTTTTTTGAATGAGTTGCGA 1134
||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||
Sbjct 1101 AATGGACTTTGTAAAGCTGGGAAAGTGTGTGAAGCGATTAGTTTGTTGAACGAGTTGCGA 1160
Query 1135 GTGAATGAGTTTGAGATTGATGAAGAAATGTATAGTACATTGAGTGAAGAGTGTTACAGA 1194
|| ||||||||||||||||||||||||||||||| | |||||| ||||| ||||||||||
Sbjct 1161 GTAAATGAGTTTGAGATTGATGAAGAAATGTATATTGCATTGACTGAAGGGTGTTACAGA 1220
Query 1195 GTAGGAATGATAGATAAATCTTTGGAAGTGGTGGCTGAGATGATTAGGGATGGATTCATT 1254
||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||
Sbjct 1221 GTAGGAATGATAGATAAATCTTTAGAAGTGGTGGCTGAGATGATTCGGGAAGGATTCATT 1280
Query 1255 CCTGGTGCTACGATATGTGAAAGATTAGCTGATTCGTTGTTTGAAGTAAACAGGAAAGAG 1314
|| | ||||||||||||||||||||||||||| | ||||||||||||||| ||||||||
Sbjct 1281 CCCGACGCTACGATATGTGAAAGATTAGCTGATGCATTGTTTGAAGTAAACCGGAAAGAG 1340
Query 1315 GCACAAATGCTGATTACCATTGTGGTTAAGTGTGGTATTAAACCAAAATCGTGTTCTCAA 1374
||||||||| || |||| |||| |||||| |||| | ||||| ||||| | |||| ||
Sbjct 1341 GCACAAATGATGGTTACT-TTGTAGTTAAGAGTGGCGTCAAACCGAAATCTTTTTCTGAA 1399
Query 1375 TATGGTCTGAAATGA 1389
| ||||| |||||||
Sbjct 1400 TTTGGTCCGAAATGA 1414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51917003935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5