BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28060.1
Length=802
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481705 jgi|Araly1|481705|fgenesh2_kg.4__765__AT2G28060.1 963 0.0
> Ahg481705 jgi|Araly1|481705|fgenesh2_kg.4__765__AT2G28060.1
Length=758
Score = 963 bits (521), Expect = 0.0
Identities = 709/790 (90%), Gaps = 51/790 (6%)
Strand=Plus/Plus
Query 32 AGCCAATAAGCAAAACAAAAGCTGATGCTTGTCGCGACTGTGTTCGTCAAGAATCTCCAG 91
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1 AGCCAATAAGCAAAACAAAAGCTGATGCTTGTCGCAACTGTGTTCGTCAAGAATCT-CAG 59
Query 92 GACGAACCCAATCTTCTCTCTCGAAGCTGTCTAAAATTAATCAATCAATCATTGAGCTAA 151
|||||||||| | || ||| ||||||||||||||| | |
Sbjct 60 CACGAACCCAA---------T-----CT-TCT---ATTAATCAATCAATC----A--T-- 93
Query 152 TCATATTCTAGGTT--TTTGTTTTAAGGATTTGTGTAGACTTTCATTGCTGCTACGTTTT 209
|| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 94 TC--ATTCTAGGTTAAGTTGTTTTGAGGATTTGTGTAGACTTTCATTGCTGCTACGTTTT 151
Query 210 TGAAAGGGTAATTTGAAGGGCTTAGCTTC-C------CAA-A-GGCACT-AGGTGGCAAT 259
||||||||| ||||||||||||||||||| | || | || ||| |||| |||||
Sbjct 152 TGAAAGGGTGATTTGAAGGGCTTAGCTTCACAAAATGGAATATGGTACTAAGGTTGCAAT 211
Query 260 CTTATCCAAGATGAACAGTCAAAATCCTGATGATCATGAGGACACAACGGTTGTGGGATT 319
||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 212 CTTATCCAAGATGAATAGTCAAAATCCGGATGGTCATGAGGACACAACGGTTGTGGGATT 271
Query 320 TGAAGTACCTGTATCACCGGTTTCAAGTTACAACAATGTGTATTCCTCAACCGAAGATGA 379
||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 272 TGAAGTACCTGTATCGCCGGTTTCAAGTTACAACAATGTGTATTCCGCAACTGAAGATGA 331
Query 380 GACAAGAGATCCTCCAGCAGTACCGCCACACCTTCAACACTCTCTATTAGGCAATCAGGG 439
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 332 GACAAGAGATCCTCCAGCAGTACCGCCACACCTTCAACACTCTCTATTAGGCAATCCGGG 391
Query 440 TAGCATGGAACTGGCTTATGCGCCACAGAATGTTGTCCTGAACCACCTCTATATCGAGAA 499
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 392 TAGCATGGAACTGGCTTATGCGCCACAGAATGTCGTCCTGAACCACCTCTATATCGAAAA 451
Query 500 CCGAGACGCCCCAAGATCTGTTGTAGCACTCGGTTTCTCGCATCGGTTCAGGA-CTAAGT 558
|||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||
Sbjct 452 CCGAGACGCCCCAAGATCTGTTGTAGCACTCGGTTTTTCGCATCGGTTCAG-ATCTAAGT 510
Query 559 TTGTCACTGTGGTGATATACAAGCCTGTCCAAAGAAGAGGGAGCGCCAATGTTTGAATAA 618
||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 511 TTGTCACAGTGGTGATATACAAGCCTGTCCAAAGAAGAGGGAACGCCAATGTTTAAATGA 570
Query 619 TGATACCTCTTTTTAAGTAGTGTTGGGAATTTGCTTCTTTATGGATTGAATTTGGTATAC 678
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 571 TGATGCCTCTTTTTAAGTAGTGTTGGGAACTTGCTTCTTTATGGATTGAATTTGGTATAC 630
Query 679 AAAACCATCTGGTCC-GTACTGAATTTTATTCTTCTCTTACAGATTCGATTTAGACGGTT 737
|||||||||| ||| | |||||||||| |||||||||||| ||||||||||||||||||
Sbjct 631 AAAACCATCTACTCCAG-ACTGAATTTTCTTCTTCTCTTACCGATTCGATTTAGACGGTT 689
Query 738 TCTAGGTACATTCGATTGAAATCA--TC-T--TCTTGTTCGGAGTTTATATAAAATCTCC 792
|||||||| ||||||||||||||| || | ||||||||| |||||||||||||||| |
Sbjct 690 TCTAGGTA-ATTCGATTGAAATCAAATCATCATCTTGTTCGAAGTTTATATAAAATCTAC 748
Query 793 ATGCATTTTT 802
||||||||||
Sbjct 749 ATGCATTTTT 758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29621506509
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5