BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G28080.1
Length=1718
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481703 jgi|Araly1|481703|fgenesh2_kg.4__763__AT2G28080.1 2501 0.0
Ahg321400 jgi|Araly1|321400|fgenesh1_pm.C_scaffold_4001457 135 8e-31
> Ahg481703 jgi|Araly1|481703|fgenesh2_kg.4__763__AT2G28080.1
Length=1512
Score = 2501 bits (1354), Expect = 0.0
Identities = 1464/1517 (97%), Gaps = 7/1517 (0%)
Strand=Plus/Plus
Query 4 aaaaaaTATAACCTTTAAATTTTCTCTCATTTCTTCATCTTCCTCTCCACAAAACCC-AT 62
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1 AAAAAATATAACCTTTAAA-TTTCTCTCATTTCTTCATCTTCCTCTCCACAAAACCCAAG 59
Query 63 TTTAATGGCGGACGTTAGAAACCCTACAAAAAATCATCATGGTCATCATCATCTTCATGC 122
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 60 TTTAATGGCGGACGTTAAAAACCCTAAAAAAAATCATCATGGTCATCATCATCTTCATGC 119
Query 123 TCTCTTGATCCCATATCCATTTCAAGGGCATGTAAACCCATTTGTACACTTAGCCATCAA 182
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 120 TCTCTTGATCCCATATCCATTTCAAGGACATGTAAACCCATTTGTACACTTAGCCATCAA 179
Query 183 GCTCGCGTCACAGGGGATCACCGTCACTTTCGTCAACACTCATTACATCCACCACCAGAT 242
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 180 GCTCGCGTCACAGGGGATCACCGTGACTTTCGTCAACACTCATTACATCCACCATCAGAT 239
Query 243 CACAAACGGCTCCGATGGAGATATTTTCGCTGGAGTTAGGTCAGAGTCTGGCCTTGACAT 302
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 CACAAACGGCTCCGATGGAGATATTTTCGCCGGAGTTAGGTCAGAGTCTGGCCTTGACAT 299
Query 303 AAGGTACGCGACGGTTTCCGATGGTTTACCGGTCGGATTTGACCGGTCGTTGAACCATGA 362
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 AAGGTACGCGACGGTTTCCGATGGTTTACCGGTCGGATTTGACCGGTCTTTGAACCATGA 359
Query 363 CACGTACCAATCGTCGCTG-TTGCACGTGTTCTATGCGCATGTGGAAGAGCTTGTGGCGA 421
|||||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 360 CACGTACCAATCGTCGTTGCTT-CACGTGTTCTATGCGCATGTGGAAGAGCTTGTGGCGA 418
Query 422 GTCTTGTTGGAGGAGACGGCGGTGTGAATGTGATGATCGCCGACACATTCTTTGTTTGGC 481
||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 419 GTCTTGTCGGAGGAGACGGCGGTGTGAATGTTATGATCGCCGATACATTCTTTGTTTGGC 478
Query 482 CGTCTGTGGTGGCTAGGAAGTTTGGTTTGGTTTGTGTCTCGTTTTGGACCGAAGCTGCTT 541
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CGTCGGTGGTGGCTAGGAAGTTTGGTTTGGTTTGTGTCTCGTTTTGGACCGAAGCTGCTT 538
Query 542 TAGTATTTTCACTTTATTACCATATGGATCTGCTTCGGATTCATGGCCATTTTGGTGCTC 601
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TAGTTTTTTCACTTTATTACCATATGGATCTGCTTCGGATTCATGGCCATTTTGGTGCTC 598
Query 602 AAGAAACCCGCAGCGATCTAATCGACTACATTCCCGGAGTCGCCGCAATTAACCCAAAAG 661
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 599 AAGAAACCCGCCGCGATCTAATCGACTACATTCCCGGAGTCGCCGCAATAAACCCAAAAG 658
Query 662 ACACGGCGTCGTATCTTCAAGAAACCGACACGTCATCAGTAGTTCATCAAATCATCTTCA 721
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 659 ACACGGCGTCGTATCTTCAAGAAACAGACACTTCATCAGTAGTTCATCAAATCATCTTCA 718
Query 722 AAGCATTCGAAGACGTGAAAAAAGTCGATTTTGTACTCTGCAACACAATTCAGCAATTCG 781
||||||||||||||||||||||||||||||| || |||||||||||||| || |||||||
Sbjct 719 AAGCATTCGAAGACGTGAAAAAAGTCGATTTCGTTCTCTGCAACACAATACAACAATTCG 778
Query 782 AAGACAAAACAATCAAAGCCCTAAACACAAAAATCCCATTTTACGCAATCGGACCAATCA 841
|||||||||||||||||||||| || ||||||||||| |||||||| |||||||||||||
Sbjct 779 AAGACAAAACAATCAAAGCCCTTAATACAAAAATCCCTTTTTACGCCATCGGACCAATCA 838
Query 842 TACCATTCAATAACCAAACCGGTTCAGTCACAACCTCACTCTGGTCTGAATCAGATTGTA 901
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 839 TACCATTCAATAACCAAACCGGTTCAGTCACAACATCACTCTGGTCTGAATCAGATTGTA 898
Query 902 CACAATGGCTCAACACTAAACCAAAAAGCTCCGTACTTTATATCTCCTTTGGTAGTTACG 961
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 899 CACAATGGCTCAACACTAAACCAAAAAGCTCAGTACTTTATGTCTCCTTTGGTAGTTACG 958
Query 962 CTCATGTCACAAAGAAGGATCTTGTTGAGATAGCTCACGGGATTTTGTTGAGTAAAGTTA 1021
|||| ||||||||||| |||||||| || || |||||||||||||||||||||||||| |
Sbjct 959 CTCACGTCACAAAGAAAGATCTTGTCGAAATCGCTCACGGGATTTTGTTGAGTAAAGTAA 1018
Query 1022 ATTTCGTTTGGGTGGTGAGACCAGACATTGTTAGTTCAGACGAAACCAATCCATTACCAG 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1019 ATTTCGTTTGGGTGGTGAGACCAGACATTGTTAGTTCAGACGAAACCAATCCATTACGAG 1078
Query 1082 AAGGGTTTGAAACAGAAGCTGGAGATCGTGGGATTGTAATACCATGGTGTTGTCAAATGA 1141
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 AAGGTTTTGAGACAGAAGCTGGAGATCGTGGGATTGTAATACCATGGTGTTGTCAAATGA 1138
Query 1142 CGGTTTTGTCACATGAGAGTGTTGGTGGGTTTTTGACACATTGTGGTTGGAACTCGATAT 1201
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1139 CGGTTTTGTCACATGAGAGTGTTGGTGGGTTTTTGACACATTGTGGTTGGAATTCGATAT 1198
Query 1202 TGGAGACGATTTGGTGTGAGGTTCCTGTGTTGTGTTTTCCATTGTTGACTGATCAGGTTA 1261
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 1199 TGGAGACGATTTGGTGTGAGGTACCAGTTTTGTGTTTTCCATTGTTGACTGATCAGGTTA 1258
Query 1262 CGAATAGGAAGCTTGTGGTTGATGATTGGGAGATTGGGATTAATCTTTGTGAAGATAAGA 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CGAATAGGAAGCTTGTGGTTGATGATTGGGAGATTGGGATTAATCTTTGTGAAGATAAGA 1318
Query 1322 GTGATTTTGGTAGAGATGAAGTTGGGAGGAATATTAACCGTTTGATGTGTGGTGTTTCGA 1381
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GTGATTTTGGGAGAGATGAAGTTGGGAGGAATATTAACCGTTTGATGTGTGGTGTTTCGA 1378
Query 1382 AAGAGAAGATCGGACGGGTTAAAATGAGTTTGGAAGGTGCGGTGAGAAACAGTGGATCTT 1441
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 AGGAGAAGATCGGACGGGTTAAAATGAGTTTGGAAGGTGCGGTGAGAAACAGTGGATCTT 1438
Query 1442 CTTCGGAGATGAATTTAGGTTTGTTTATTGATGGACTTTTGTCTAAGGTTGGTTTATCTA 1501
|| | |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1439 CT--G-AGATGAATTTGGGTTTGTTTATTGATGGACTTTTGTCTAAGGTTGGTTTATCAA 1495
Query 1502 ATGGGAAAGCTTAAATT 1518
|||||||||||||||||
Sbjct 1496 ATGGGAAAGCTTAAATT 1512
> Ahg321400 jgi|Araly1|321400|fgenesh1_pm.C_scaffold_4001457
Length=1464
Score = 135 bits (73), Expect = 8e-31
Identities = 287/386 (74%), Gaps = 32/386 (8%)
Strand=Plus/Plus
Query 944 TCTCCTTTGGTAGTTACGCTCATGTCACAAAGAAGGATCTTGTTGAGATAGCTCACGGGA 1003
|||| |||||||| || || ||||| ||||| || |||||||||||||||| |||
Sbjct 869 TCTCGTTTGGTAGCTATGCACATGTTGGTAAGAAAGAGATTGTTGAGATAGCTCATGGGC 928
Query 1004 TTTTG-TTGAGTAAAG-TTAATTTCGTTTGGGTGGTGA-GACCAGACATTGTTAGTTCAG 1060
||||| || ||| | ||| |||| ||||||| | | | || || || ||| | || |
Sbjct 929 TTTTGCTT-AGT-GGGATTAGTTTCATTTGGGT-TTTACGTCCGGATATAGTTGGATCCG 985
Query 1061 ACGAAACC--A-ATCCATTACCAGAAGGGTTTG-AAACAGAAGCTGGAGATCGTGGGATT 1116
||| | || | | | || |||| ||||||| || |||| |||||| || ||
Sbjct 986 ACG-AGCCGGATTTTC-TT-CCAGTTGGGTTTGTGGAC-CAAGCCCAAGATCGAGGTCTT 1041
Query 1117 GTAATACCA-TGGTGTTGTCAAATGACGGT-TTTGTCACATGAGAG-TGTTGGTGGGTTT 1173
|| | ||| |||||||| || ||| | || || ||| || || ||| || || |||
Sbjct 1042 GTGGT-CCAGTGGTGTTGCCAGATGGCAGTAATT-TCAAAT-CCAGCTGTGGGAGGTTTT 1098
Query 1174 TTGACACATTGTGGTTGGAACTCGATAT-TGGAGACG-ATTTGGTGTGAGGTT-CCTGTG 1230
|| ||||||||||| ||||| || || | | |||| | ||||||||| | || ||| ||
Sbjct 1099 TTTACACATTGTGGATGGAATTCAAT-TCTAGAGA-GTGTTTGGTGTG-GTTTGCCTTTG 1155
Query 1231 TTGTGTTTTCC-ATTGTTGACTGATCAGGTT-ACGAATAGGAAGCTTGTGGTTGATGATT 1288
||||||| ||| || ||||| ||||| ||| ||||||||||||||||||||||||||||
Sbjct 1156 TTGTGTTATCCGCTT-TTGACAGATCA-GTTCACGAATAGGAAGCTTGTGGTTGATGATT 1213
Query 1289 GG-GAGATTGGGATTAATCTTTGTGA 1313
|| | ||||||||| | ||||||||
Sbjct 1214 GGTGC-ATTGGGATTGACCTTTGTGA 1238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64448694540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5