BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G28085.1

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg481702 jgi|Araly1|481702|fgenesh2_kg.4__762__AT2G28085.1          713    0.0  


> Ahg481702 jgi|Araly1|481702|fgenesh2_kg.4__762__AT2G28085.1
Length=500

 Score =  713 bits (386),  Expect = 0.0
 Identities = 465/503 (92%), Gaps = 5/503 (1%)
 Strand=Plus/Plus

Query  1    ATATACTTTTCaaacaaacaaaaaaaaacctcaaaaaaaggaaaaTATCACTTTATCTTT  60
            |||||||||||||| ||||  |||    || |||||||||||||| ||||||| || |||
Sbjct  1    ATATACTTTTCAAAGAAACCCAAAGCCCCCACAAAAAAAGGAAAAGATCACTTAATATTT  60

Query  61   TAGCATGACGAGGCAAAGAATGATTACAATTGAGTCGCCGAAGAAGAAAATGGGTGGAAT  120
            ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  61   TAGCATGACCAGGCAAAGAATGATTACAGTTGAGTCGCCGAAGAAGAAAATGGGTGGAAT  120

Query  121  TGTGAAGCTCAAGAATGTTGTAGAGAGGCTGGTGCAAATCAAAGGCTTTTCCTCGGCCAA  180
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  121  TGTGAAGCTCAAGAATGTTGTAGAGAGGTTGGTGCAAATCAAAGGCTTTTCCTCGGCCAA  180

Query  181  GAAACCGTGT-CCTGAAGAATACGGCCGAGATTGTGTCCCAAAAGACGTAAAGGAAGGTC  239
            |||||||||| || ||||||||  |||| |||||||||||||||||||| ||||||||||
Sbjct  181  GAAACCGTGTTCC-GAAGAATATAGCCGTGATTGTGTCCCAAAAGACGTGAAGGAAGGTC  239

Query  240  ACTTCGCGGTGATAGCTGTTGATGGGTATCATGAGCCTACACAAAGATTTGTTGTCCCAT  299
            | |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct  240  ATTTCGCGGTGATAGCCGTTGATGGGTATCATGAGCCTACACAAAGATTCGTTGTCCCAT  299

Query  300  TGATGTTTCTAGAACACCCTATGTTCCGTAAGCTTCTAGAACAAGCAGAGGAGGAATACG  359
            |||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct  300  TGATGTTTCTAGAACACCCTATGTTCCGGAAGCTTTTGGAACAAGCAGAGGAGGAATACG  359

Query  360  GGTTCTATCACGATGGAGCGCTA-ATGGTACCTTGCCGGCCAAGCCACCTACGGATGATA  418
            |||||||||| || ||||| ||  ||||||||||||||||||||||||||||| ||||||
Sbjct  360  GGTTCTATCATGACGGAGC-CTTGATGGTACCTTGCCGGCCAAGCCACCTACGAATGATA  418

Query  419  TTGACCGAGCAATGGTGTTAGAATTTATGCTGTAGTTAATTACTGATCAACGTCATATTA  478
            |||||||||||||||||||||||||||||||||||||| | |||| || || ||||||||
Sbjct  419  TTGACCGAGCAATGGTGTTAGAATTTATGCTGTAGTTA-TAACTGTTCTACTTCATATTA  477

Query  479  CATAATAATACCGAATTATTCAC  501
            |||||||| ||||||||||||||
Sbjct  478  CATAATAAAACCGAATTATTCAC  500



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18200215953


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5